| 1 | #-Q- platine #!/usr/bin/ksh |
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| 2 | #-Q- platine ################## |
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| 3 | #-Q- platine ## PLATINE CEA ## |
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| 4 | #-Q- platine ################## |
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| 5 | #-Q- platine #BSUB -J ::Jobname:: # nom de la requete |
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| 6 | #-Q- platine #BSUB -N # message a la fin du job |
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| 7 | #-Q- platine #BSUB -o Script_Output_::Jobname::.1 # nom du fichier de sortie |
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| 8 | #-Q- platine #BSUB -n ::JobNumProcTot:: # reservation des processeurs pour le job |
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| 9 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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| 10 | #-Q- platine BATCH_NUM_PROC_TOT=$SLURM_NPROCS |
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| 11 | #-Q- sx8brodie ####################### |
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| 12 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 13 | #-Q- sx8brodie ####################### |
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| 14 | #-Q- sx8brodie #PBS -N ::Jobname:: # nom de la requete |
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| 15 | #-Q- sx8brodie #PBS -m a # message a la fin du job |
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| 16 | #-Q- sx8brodie #PBS -j o # regroupement des sorties du job : standard error et output |
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| 17 | #-Q- sx8brodie #PBS -o Script_Output_::Jobname::.1 # nom du fichier de sortie |
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| 18 | #-Q- sx8brodie #PBS -S /usr/bin/ksh # shell de soumission |
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| 19 | #-Q- sx8brodie #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 20 | #-Q- sx8brodie #PBS -q ::JobClass:: # classe multi pour BATCH_NUM_PROC_TOT superieur a 2, mono sinon |
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| 21 | #-Q- sx8brodie #PBS -l cpunum_job=${BATCH_NUM_PROC_TOT} # reservation des processeurs pour le job |
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| 22 | #-Q- sx8brodie #PBS -l memsz_job=6.0gb # Limite memoire |
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| 23 | #-Q- sx8brodie #PBS -l cputim_job=1:00:00 # Limite temps |
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| 24 | #-Q- sx8mercure #!/bin/ksh |
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| 25 | #-Q- sx8mercure ###################### |
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| 26 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 27 | #-Q- sx8mercure ###################### |
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| 28 | #-Q- sx8mercure #PBS -N ::Jobname:: # nom de la requete |
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| 29 | #-Q- sx8mercure #PBS -m a # message a la fin du job |
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| 30 | #-Q- sx8mercure #PBS -j o # regroupement des sorties du job : standard error et output |
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| 31 | #-Q- sx8mercure #PBS -o Script_Output_::Jobname::.1 # nom du fichier de sortie |
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| 32 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 33 | #-Q- sx8mercure #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 34 | #-Q- sx8mercure #PBS -l cpunum_job=${BATCH_NUM_PROC_TOT} # reservation des processeurs pour le job |
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| 35 | #-Q- sx8mercure #PBS -l memsz_job=6.0gb # limite memoire |
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| 36 | #-Q- sx8mercure #PBS -l elapstim_req=00:30:00 # limite en temps elapsed |
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| 37 | #-Q- default #!/bin/ksh |
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| 38 | #-Q- default ################## |
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| 39 | #-Q- default ## DEFAULT HOST ## |
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| 40 | #-Q- default ################## |
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| 41 | #-Q- default #For MPI use, uncomment next line : |
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| 42 | #-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
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| 43 | |
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| 44 | # $Date: 2008/03/03 14:45:44 $ |
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| 45 | # $Name: libIGCM_v1 $ |
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| 46 | # $Revision: 1.33 $ |
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| 47 | # IPSL (2006) |
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| 48 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 49 | |
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| 50 | #set -eu |
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| 51 | #set -vx |
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| 52 | |
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| 53 | date |
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| 54 | echo |
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| 55 | echo "#######################################" |
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| 56 | echo "# ANOTHER GREAT SIMULATION #" |
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| 57 | echo "#######################################" |
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| 58 | echo |
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| 59 | |
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| 60 | #D--------------------------------------------------------------------== |
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| 61 | #D--------------------------------------------------------------------== |
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| 62 | #D- |
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| 63 | #D- Job to launch IGCM models |
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| 64 | #D- |
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| 65 | #D--------------------------------------------------------------------== |
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| 66 | #D--------------------------------------------------------------------== |
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| 67 | #D- |
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| 68 | |
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| 69 | MODIPSL=::modipsl:: |
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| 70 | libIGCM=${MODIPSL}/libIGCM |
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| 71 | |
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| 72 | #D--------------------------------------------------------------------== |
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| 73 | #D- -1. User modification place |
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| 74 | #D- - Job Verbosity |
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| 75 | #D- - PeriodNb |
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| 76 | #D--------------------------------------------------------------------== |
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| 77 | |
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| 78 | #D- Increased verbosity (1, 2, 3) |
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| 79 | Verbosity=3 |
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| 80 | #D- Number of execution in one job |
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| 81 | PeriodNb=1 |
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| 82 | |
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| 83 | #D- |
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| 84 | # -------------------------------------------------------------------- |
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| 85 | #D- ! Optionnal features /!\ Use with care ! |
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| 86 | # -------------------------------------------------------------------- |
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| 87 | |
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| 88 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 89 | #D- Default=true |
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| 90 | DEBUG_debug=false |
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| 91 | |
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| 92 | #D- Set DEBUG_sys to false to disable output calls of function |
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| 93 | #D- Default=true |
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| 94 | #DEBUG_sys=false |
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| 95 | |
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| 96 | #D- Define running directory |
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| 97 | #D- Default=${TMPDIR} ie temporary batch directory |
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| 98 | #RUN_DIR_PATH=/workdir4/rech/ces/rces452/BABATEST/TESTPOST |
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| 99 | |
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| 100 | #D- Define submit directory |
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| 101 | #D- Default= where you launch qsub |
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| 102 | #SUBMIT_DIR=/workdir4/rech/ces/rces452/SCRIPT_V1/modipsl/config/IPSLCM4_v1_OASIS3/EXP01 |
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| 103 | |
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| 104 | #D- Turn in dry run mode ? (0,1,2,3) |
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| 105 | #D- Default=0 |
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| 106 | #DRYRUN=3 |
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| 107 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 108 | # ------------------------------------------------------------------------------------- |
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| 109 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 110 | # | | Cp/Exe param files | | Chmod | | |
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| 111 | # | | Qsub | | | | |
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| 112 | # ------------------------------------------------------------------------------------- |
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| 113 | # | 0 | yes | yes | yes | yes | |
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| 114 | # ------------------------------------------------------------------------------------- |
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| 115 | # | 1 | yes | yes | yes | no | |
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| 116 | # ------------------------------------------------------------------------------------- |
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| 117 | # | 2 | yes | yes | no | no | |
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| 118 | # ------------------------------------------------------------------------------------- |
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| 119 | # | 3 | yes | no | no | no | |
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| 120 | # ------------------------------------------------------------------------------------- |
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| 121 | |
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| 122 | #D- Define input file root directory |
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| 123 | #D- Default=/u/rech/ces/rces452/IGCM |
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| 124 | #R_IN=/u/rech/por/rpor111/DATA |
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| 125 | |
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| 126 | #D- |
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| 127 | #D--------------------------------------------------------------------== |
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| 128 | #D- 0. System Environment |
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| 129 | #D- - Define variables for Number of processors |
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| 130 | #D- - Define MPI variables |
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| 131 | #D- - Define batch scheduler variables |
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| 132 | #D- - Source IGCM Library |
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| 133 | #D- - Get RESOLution in .resol file (temporary) |
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| 134 | #D--------------------------------------------------------------------== |
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| 135 | |
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| 136 | #D--------------------------------------------------------------------== |
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| 137 | |
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| 138 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 139 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 140 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 141 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 142 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 143 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 144 | #------- |
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| 145 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 146 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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| 147 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
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| 148 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
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| 149 | |
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| 150 | #D--------------------------------------------------------------------== |
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| 151 | |
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| 152 | #-- Resolution FLAG for oasis input |
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| 153 | RESOL=$(cat ${SUBMIT_DIR}/../.resol) |
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| 154 | #RESOL="ORCA2xLMD9671" |
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| 155 | |
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| 156 | #D- |
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| 157 | #D--------------------------------------------------------------------== |
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| 158 | #D- 1. INITIALIZE CONFIGURATION AND THEN COMPONENTS |
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| 159 | #D--------------------------------------------------------------------== |
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| 160 | |
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| 161 | # --------------------------------------------------------------------== |
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| 162 | #D- Initialize configuration : |
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| 163 | #D- - Simulation configuration |
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| 164 | #D- - Simulation parameters |
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| 165 | #D- - Execution parameter |
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| 166 | #D- - Define input files directory |
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| 167 | #D- - Read or initialize CumulPeriod |
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| 168 | #D- - run.card |
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| 169 | #D- |
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| 170 | # --------------------------------------------------------------------== |
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| 171 | IGCM_config_Initialize |
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| 172 | |
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| 173 | # --------------------------------------------------------------------== |
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| 174 | #D- Define, create and cd RUN_DIR |
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| 175 | #D- |
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| 176 | # --------------------------------------------------------------------== |
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| 177 | RUN_DIR=${RUN_DIR_PATH}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 178 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 179 | IGCM_sys_Cd ${RUN_DIR} |
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| 180 | |
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| 181 | # --------------------------------------------------------------------== |
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| 182 | #D- Initialize each components taking part |
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| 183 | #D- into simulation configuration : |
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| 184 | #D- - Define component executable |
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| 185 | #D- - Define Write Frequency by component "1M" "1D" ... |
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| 186 | #D- - Source ${comp}.driver |
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| 187 | #D- - Define Storage Places by component |
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| 188 | #D- - ${comp}_Initialize : |
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| 189 | #D- - Patterns to sed |
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| 190 | #D- - Variables from namelist |
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| 191 | #D- |
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| 192 | # --------------------------------------------------------------------== |
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| 193 | IGCM_comp_Initialize |
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| 194 | |
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| 195 | # --------------------------------------------------------------------== |
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| 196 | #D- Verify compatibility of period length and write frequencies |
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| 197 | #D- |
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| 198 | # --------------------------------------------------------------------== |
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| 199 | #IGCM_config_Check |
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| 200 | |
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| 201 | #D--------------------------------------------------------------------== |
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| 202 | #D- 2. ENTER THE DEEP EXECUTION LOOP |
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| 203 | #D- !!!! FASTEN YOUR SEAT BELTS !!!! |
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| 204 | #D- !!!!! PLEASE. !!!! |
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| 205 | #D- !! WE WILL CROSS TURBULENCES. !! |
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| 206 | #D--------------------------------------------------------------------== |
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| 207 | |
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| 208 | Period=1 |
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| 209 | while [ ${Period} -le ${PeriodNb} ]; do |
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| 210 | |
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| 211 | echo |
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| 212 | echo "Starting iteration ${Period} / ${PeriodNb}" |
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| 213 | |
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| 214 | #D- |
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| 215 | # ------------------------------------------------------------------ |
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| 216 | #D- COMPUTE AND DEFINE DATE STUFF. |
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| 217 | # ------------------------------------------------------------------ |
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| 218 | IGCM_config_PeriodStart |
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| 219 | #D- => ${PeriodDateBegin} |
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| 220 | #D- => ${PeriodDateEnd} |
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| 221 | #D- => ${CumulPeriod} |
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| 222 | #D- => ${DatesPeriod}=${PeriodDateBegin}_${PeriodDateEnd} |
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| 223 | #D- => ${PeriodLength} => JOURS=31 , 28, 29, 30 ; MOIS=0 ; ANS=0 |
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| 224 | #D- => update run.card value |
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| 225 | |
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| 226 | #D- |
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| 227 | # ------------------------------------------------------------------ |
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| 228 | #D- Get parameters text files updated by job (.def, namelist ...) |
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| 229 | #D- READ AND USE BY GCM AT EACH EXECUTION. |
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| 230 | # ------------------------------------------------------------------ |
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| 231 | IGCM_comp_GetInputParametersFiles |
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| 232 | |
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| 233 | #D- |
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| 234 | # ------------------------------------------------------------------ |
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| 235 | #D- Get initial state (Etat0, carteveg,relief...) |
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| 236 | #D- NECESSARY ONLY IF CumulPeriod= (=> NUMERO) == 1 |
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| 237 | #D- AND ???_Restart=NO |
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| 238 | #D- READ AND USE BY GCM FOR ONLY ONE EXECUTION. |
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| 239 | # ------------------------------------------------------------------ |
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| 240 | IGCM_comp_GetInputInitialStateFiles |
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| 241 | |
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| 242 | #D- |
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| 243 | # ------------------------------------------------------------------ |
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| 244 | #D- Get Boundaries Conditions (SST, WIND[X,Y,Z], LAI ...) |
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| 245 | #D- READ AND USE BY GCM AT EACH EXECUTION. |
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| 246 | # ------------------------------------------------------------------ |
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| 247 | IGCM_comp_GetInputBoundaryFiles |
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| 248 | |
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| 249 | #D- |
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| 250 | # ------------------------------------------------------------------ |
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| 251 | #D- Get restart files (restartphy.nc, orca_restart.nc ...) |
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| 252 | #D- READ AND USE BY GCM AT EACH EXECUTION. |
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| 253 | #D- |
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| 254 | #D- IF A COMPONENT DO NOT RESTART FROM PREVIOULSY COMPUTED RESTART |
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| 255 | #D- ONLY IF CumulPeriod= (=> NUMERO) == 1 |
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| 256 | #D- MUST EXECUTE CREATE ETAT0_LIMIT (TYPICALLY LMDZ AND ./create_etat0_limit.e) |
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| 257 | #D- |
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| 258 | #D- IF CumulPeriod == 1 |
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| 259 | #D- AND A COMPONENT RESTART FROM PREVIOULSY COMPUTED RESTART |
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| 260 | #D- MUST BRING THIS RESTART IN ${RUN_DIR_PATH} |
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| 261 | #D- |
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| 262 | #D- ELSE BRING RESTART FROM ${JobName} IN ${RUN_DIR_PATH} |
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| 263 | # ------------------------------------------------------------------ |
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| 264 | IGCM_comp_GetInputRestartFiles |
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| 265 | |
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| 266 | #D- |
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| 267 | # ------------------------------------------------------------------ |
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| 268 | #D- Test if all was right before Update |
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| 269 | # ------------------------------------------------------------------ |
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| 270 | IGCM_debug_Verif_Exit |
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| 271 | |
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| 272 | # ------------------------------------------------------------------ |
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| 273 | #D- Activate running environnement variables |
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| 274 | # ------------------------------------------------------------------ |
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| 275 | IGCM_sys_activ_variables |
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| 276 | |
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| 277 | #D- |
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| 278 | # ------------------------------------------------------------------ |
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| 279 | #D- UPDATE ParametersFiles (.def, namelist ...) with |
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| 280 | #D- current value of (ORCA_NIT00, ORCA_LRSTAR, RAZ_DATE, ...) |
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| 281 | # ------------------------------------------------------------------ |
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| 282 | IGCM_comp_Update |
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| 283 | |
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| 284 | #D- |
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| 285 | # ------------------------------------------------------------------ |
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| 286 | #D- Test if all was right before execution |
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| 287 | # ------------------------------------------------------------------ |
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| 288 | IGCM_debug_Verif_Exit |
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| 289 | |
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| 290 | #D- |
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| 291 | #D----------------------------------------------------------------== |
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| 292 | #D- 3. Execution |
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| 293 | #D----------------------------------------------------------------== |
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| 294 | |
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| 295 | echo |
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| 296 | echo "#######################################" |
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| 297 | echo "# DIR BEFORE RUN EXECUTION #" |
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| 298 | echo "#######################################" |
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| 299 | echo |
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| 300 | ls -lrt |
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| 301 | |
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| 302 | echo "========================================================================" |
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| 303 | if ( [ X${BATCH_NUM_PROC_TOT} != X ] && [ "${BATCH_NUM_PROC_TOT}" -gt 1 ] ) ; then |
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| 304 | MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND} |
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| 305 | eval MPIRUN_OPTIONS=${config_UserChoices_JobRunOptions} |
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| 306 | else |
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| 307 | MPIRUN_COMMAND=${MPIRUN_COMMAND:="time "} |
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| 308 | MPIRUN_OPTIONS=${MPIRUN_OPTIONS:=""} |
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| 309 | fi |
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| 310 | |
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| 311 | if [ ${DRYRUN} -le 1 ] ; then |
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| 312 | REAL_DATE_INIT=$( date ) |
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| 313 | echo "EXECUTION of : ${MPIRUN_COMMAND} ${MPIRUN_OPTIONS} ./${config_Executable_Name} > ${Exe_Output} 2>&1" |
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| 314 | typeset RET |
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| 315 | ${MPIRUN_COMMAND} ${MPIRUN_OPTIONS} ./${config_Executable_Name} > ${Exe_Output} 2>&1 |
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| 316 | RET=$? |
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| 317 | if [ ${RET} -gt 0 ] ; then |
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| 318 | echo "Return code of executable :" ${RET} |
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| 319 | IGCM_debug_Exit "EXECUTABLE" |
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| 320 | IGCM_sys_Cp ${Exe_Output} ${SUBMIT_DIR}/${PREFIX}_${Exe_Output}_error |
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| 321 | fi |
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| 322 | echo ${REAL_DATE_INIT} >> ${Exe_Output} |
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| 323 | date >> ${Exe_Output} |
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| 324 | else |
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| 325 | echo "EXECUTION of : ${MPIRUN_COMMAND} ${MPIRUN_OPTIONS} ./${config_Executable_Name} simulated for DRYRUN = " $DRYRUN |
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| 326 | echo "FOR EXECUTION DRYRUN mode = " $DRYRUN >> stack |
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| 327 | fi |
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| 328 | echo "========================================================================" |
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| 329 | |
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| 330 | echo |
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| 331 | echo "#######################################" |
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| 332 | echo "# DIR AFTER RUN EXECUTION #" |
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| 333 | echo "#######################################" |
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| 334 | echo |
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| 335 | ls -lrt |
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| 336 | |
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| 337 | #D- |
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| 338 | # ------------------------------------------------------------------ |
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| 339 | #D- Desactivate running environnement variables |
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| 340 | # ------------------------------------------------------------------ |
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| 341 | IGCM_sys_desactiv_variables |
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| 342 | |
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| 343 | #D- |
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| 344 | #D----------------------------------------------------------------== |
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| 345 | #D- 4. Post execution operations |
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| 346 | #D----------------------------------------------------------------== |
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| 347 | |
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| 348 | #D- |
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| 349 | # ------------------------------------------------------------------ |
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| 350 | #D- Save on archive machine netcdf outputs, restarts |
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| 351 | #D- and text files of models |
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| 352 | # ------------------------------------------------------------------ |
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| 353 | IGCM_comp_Finalize |
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| 354 | |
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| 355 | #D- |
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| 356 | # ------------------------------------------------------------------ |
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| 357 | #D- Test if all was right after Finalize |
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| 358 | # ------------------------------------------------------------------ |
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| 359 | IGCM_debug_Verif_Exit |
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| 360 | |
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| 361 | #D- |
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| 362 | # ------------------------------------------------------------------ |
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| 363 | #D- Launch post-treatment process if necessary |
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| 364 | # ------------------------------------------------------------------ |
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| 365 | IGCM_post_Initialize |
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| 366 | |
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| 367 | #D- |
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| 368 | # ------------------------------------------------------------------ |
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| 369 | #D- Save job output |
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| 370 | #D- Manage executable size to save only different binary |
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| 371 | #D- Write in run.card user, system and elapse time |
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| 372 | #D- Check that everything went well ! No ? then we stop. |
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| 373 | #D- Determine next computed period |
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| 374 | # ------------------------------------------------------------------ |
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| 375 | IGCM_config_PeriodEnd |
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| 376 | |
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| 377 | echo "Ending iteration ${Period}" |
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| 378 | (( Period = Period + 1 )) |
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| 379 | |
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| 380 | # End loop if date end is reached |
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| 381 | if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then |
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| 382 | break ; |
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| 383 | fi |
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| 384 | |
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| 385 | done |
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| 386 | |
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| 387 | #D- |
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| 388 | #D--------------------------------------------------------------------== |
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| 389 | #D- 5. Submit next job or send mail if simulation over. |
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| 390 | #D--------------------------------------------------------------------== |
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| 391 | IGCM_config_Finalize |
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| 392 | |
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| 393 | date |
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