[314] | 1 | #-Q- cesium #!/bin/ksh |
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| 2 | #-Q- cesium ###################### |
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| 3 | #-Q- cesium ## CESIUM CEA ## |
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| 4 | #-Q- cesium ###################### |
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| 5 | #-Q- cesium #MSUB -r MONITORING # Nom du job |
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| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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| 9 | #-Q- cesium #MSUB -E "-j o" |
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| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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[2] | 11 | #-Q- platine #!/usr/bin/ksh |
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| 12 | #-Q- platine ################## |
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| 13 | #-Q- platine ## PLATINE CEA ## |
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| 14 | #-Q- platine ################## |
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| 15 | #-Q- platine #BSUB -J MONITORING # Nom du job |
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| 16 | #-Q- platine #BSUB -N # message a la fin du job |
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| 17 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 18 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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[18] | 19 | #-Q- platine #BSUB -q post # Passage en queue post |
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[426] | 20 | #-Q- platine #BSUB -L /bin/ksh |
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[59] | 21 | #-Q- sx8brodie #!/bin/ksh |
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[2] | 22 | #-Q- sx8brodie ####################### |
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| 23 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 24 | #-Q- sx8brodie ####################### |
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[58] | 25 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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[503] | 26 | #-Q- sx8brodie # @ wall_clock_limit = 1:00:00 |
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[58] | 27 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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[60] | 28 | #-Q- sx8brodie # @ job_name = MONITORING |
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[58] | 29 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 30 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 31 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 32 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 33 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 34 | #-Q- sx8brodie # @ notification = error |
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[178] | 35 | #-Q- sx8brodie # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER |
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[58] | 36 | #-Q- sx8brodie # @ queue |
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[68] | 37 | #-Q- aix6 #!/bin/ksh |
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| 38 | #-Q- aix6 ####################### |
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| 39 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 40 | #-Q- aix6 ####################### |
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| 41 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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[503] | 42 | #-Q- aix6 # @ wall_clock_limit = 1:00:00 |
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[68] | 43 | #-Q- aix6 # Nom du travail LoadLeveler |
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| 44 | #-Q- aix6 # @ job_name = MONITORING |
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| 45 | #-Q- aix6 # Fichier de sortie standard du travail |
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| 46 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 47 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 48 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 49 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 50 | #-Q- aix6 # @ notification = error |
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[178] | 51 | #-Q- aix6 # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER |
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[68] | 52 | #-Q- aix6 # @ queue |
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[386] | 53 | #-Q- ulam #!/bin/ksh |
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| 54 | #-Q- ulam ####################### |
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| 55 | #-Q- ulam ## ULAM IDRIS ## |
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| 56 | #-Q- ulam ####################### |
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| 57 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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[503] | 58 | #-Q- ulam # @ wall_clock_limit = 1:00:00 |
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[386] | 59 | #-Q- ulam # Nom du travail LoadLeveler |
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| 60 | #-Q- ulam # @ job_name = MONITORING |
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| 61 | #-Q- ulam # Fichier de sortie standard du travail |
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| 62 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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| 63 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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| 64 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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| 65 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 66 | #-Q- ulam # @ notification = error |
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| 67 | #-Q- ulam # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $libIGCM_SX ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER |
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| 68 | #-Q- ulam # @ queue |
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[2] | 69 | #-Q- sx8mercure #!/bin/ksh |
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| 70 | #-Q- sx8mercure ###################### |
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| 71 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 72 | #-Q- sx8mercure ###################### |
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| 73 | #-Q- sx8mercure #PBS -N MONITORING # Nom du job |
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| 74 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 75 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 76 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 77 | #-Q- sx8mercure #PBS -l cputim_job=1:00:00 # Limite temps a 2 heures |
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[299] | 78 | #-Q- sx8mercure #PBS -q scalaire |
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[172] | 79 | #-Q- sx9mercure #!/bin/ksh |
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[316] | 80 | #-Q- sx9mercure ######################### |
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| 81 | #-Q- sx9mercure ## CESIUM FOR SX9 CEA ## |
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| 82 | #-Q- sx9mercure ######################### |
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| 83 | #-Q- sx9mercure #MSUB -r MONITORING # Nom du job |
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| 84 | #-Q- sx9mercure #MSUB -N 1 # Reservation du noeud |
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| 85 | #-Q- sx9mercure #MSUB -n 1 # Reservation du processus |
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| 86 | #-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job |
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| 87 | #-Q- sx9mercure #MSUB -E "-j o" |
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| 88 | #-Q- sx9mercure #MSUB -E "-S /bin/ksh" |
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[222] | 89 | #-Q- titane #!/bin/ksh |
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| 90 | #-Q- titane ###################### |
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| 91 | #-Q- titane ## TITANE CEA ## |
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| 92 | #-Q- titane ###################### |
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| 93 | #-Q- titane #MSUB -r MONITORING # Nom du job |
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| 94 | #-Q- titane #MSUB -N 1 # Reservation du noeud |
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| 95 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 96 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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| 97 | #-Q- titane #MSUB -E "-j o" |
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| 98 | #-Q- titane #MSUB -E "-S /bin/ksh" |
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| 99 | #-Q- titane ##MSUB -e nco.out # Sortie standard |
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| 100 | #-Q- titane ##MSUB -o nco.out # Sortie standard |
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[281] | 101 | #-Q- lxiv8 ###################### |
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| 102 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 103 | #-Q- lxiv8 ###################### |
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| 104 | #-Q- lxiv8 #PBS -N MONITORING |
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| 105 | #-Q- lxiv8 #PBS -m a |
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| 106 | #-Q- lxiv8 #PBS -j oe |
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| 107 | #-Q- lxiv8 #PBS -q medium |
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| 108 | #-Q- lxiv8 #PBS -o MONITORING.$$ |
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| 109 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[2] | 110 | #-Q- default #!/bin/ksh |
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| 111 | #-Q- default ################## |
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| 112 | #-Q- default ## DEFAULT HOST ## |
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| 113 | #-Q- default ################## |
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| 114 | |
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[373] | 115 | #************************************************************** |
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| 116 | # Author: Sebastien Denvil |
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| 117 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 118 | # $Revision:: $ Revision of last commit |
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| 119 | # $Author:: $ Author of last commit |
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| 120 | # $Date:: $ Date of last commit |
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[2] | 121 | # IPSL (2006) |
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| 122 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 123 | # |
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| 124 | #************************************************************** |
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[2] | 125 | |
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[108] | 126 | #set -eu |
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| 127 | #set -vx |
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| 128 | |
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[2] | 129 | date |
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| 130 | |
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| 131 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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[108] | 132 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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[386] | 133 | #-Q- ulam export OMP_NUM_THREADS=1 |
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[2] | 134 | |
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[280] | 135 | ######################################################################## |
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| 136 | |
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| 137 | #D- Flag to determine if this job in a standalone mode |
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| 138 | #D- Default : value from AA_job if any |
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| 139 | StandAlone=${StandAlone:=true} |
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| 140 | |
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| 141 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 142 | #D- Default : value from AA_job if any |
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| 143 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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| 144 | # WARNING for StandAlone used : To run this script on some machine, |
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| 145 | # you must check MirrorlibIGCM variable in sys library. |
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| 146 | # If this variable is true, you must use libIGCM_POST path instead |
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| 147 | # of your running libIGCM directory. |
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| 148 | |
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[334] | 149 | #D- Increased verbosity (1, 2, 3) |
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| 150 | #D- Default : value from AA_job if any |
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| 151 | Verbosity=${Verbosity:=3} |
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| 152 | |
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| 153 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 154 | #D- Default : value from AA_job if any |
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| 155 | DEBUG_debug=${DEBUG_debug:=false} |
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| 156 | |
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| 157 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 158 | #D- Default : value from atmospheric driver if any |
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| 159 | RESOL_ATM=${RESOL_ATM:=ALL} |
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| 160 | |
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| 161 | #D- Flag to determine surface resolution |
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| 162 | #D- Default : value from surface driver if any |
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| 163 | RESOL_SRF=${RESOL_SRF:=ALL} |
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| 164 | |
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| 165 | #D- Flag to determine surface resolution |
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| 166 | #D- Default : value from surface driver if any |
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| 167 | RESOL_SBG=${RESOL_SBG:=ALL} |
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| 168 | |
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| 169 | #D- TEMPORARY Flag to determine ocean resolution |
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| 170 | #D- Default : value from ocean driver if any |
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| 171 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 172 | |
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| 173 | #D- TEMPORARY Flag to determine ice resolution |
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| 174 | #D- Default : value from ice driver if any |
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| 175 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 176 | |
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| 177 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 178 | #D- Default : value from ice driver if any |
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| 179 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 180 | |
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[2] | 181 | ###################################################################### |
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| 182 | |
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[108] | 183 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 184 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 185 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 186 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 187 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 188 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 189 | #------- |
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| 190 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[2] | 191 | |
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| 192 | ###################################################################### |
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| 193 | |
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| 194 | #set -vx |
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| 195 | |
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| 196 | #=========================================== |
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[36] | 197 | RUN_DIR=${RUN_DIR_PATH} |
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[34] | 198 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 199 | IGCM_sys_Cd ${RUN_DIR} |
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| 200 | |
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[436] | 201 | # ------------------------------------------------------------------ |
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| 202 | # Test if all was right before proceeding further |
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| 203 | # ------------------------------------------------------------------ |
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| 204 | IGCM_debug_Verif_Exit_Post |
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| 205 | |
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[2] | 206 | if [ ${StandAlone} = true ] ; then |
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| 207 | CARD_DIR=${SUBMIT_DIR} |
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| 208 | else |
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[36] | 209 | CARD_DIR=${RUN_DIR}/$( basename ${SUBMIT_DIR} ) |
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| 210 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR} |
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[2] | 211 | fi |
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| 212 | |
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| 213 | # |
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| 214 | # First of all |
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| 215 | # |
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| 216 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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| 217 | typeset option |
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| 218 | for option in ${config_UserChoices[*]} ; do |
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| 219 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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| 220 | done |
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| 221 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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| 222 | |
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[263] | 223 | #================================== |
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| 224 | #R_SAVE : Job output directory |
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| 225 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
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| 226 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
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| 227 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 228 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 229 | else |
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| 230 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 231 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 232 | fi |
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[102] | 233 | # |
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| 234 | IGCM_sys_TestDirArchive ${R_SAVE}/MONITORING |
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| 235 | if [ $? = 0 ] ; then |
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| 236 | IGCM_debug_Print 1 "Get MONITORING directory from archive" |
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| 237 | IGCM_sys_Get_Dir ${R_SAVE}/MONITORING ${RUN_DIR} |
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| 238 | else |
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| 239 | IGCM_debug_Print 1 "MONITORING first pass. Nothing has been done before" |
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| 240 | fi |
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[2] | 241 | # -------------------------------------------- |
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| 242 | # Insert your commands between III...III lines |
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| 243 | # and precise produced directories to save |
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| 244 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 245 | |
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| 246 | for comp in ${config_ListOfComponents[*]} ; do |
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[253] | 247 | IGCM_debug_Print 1 "################## Component: ${comp} ######################" |
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[2] | 248 | liste_file_monitoring="" |
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| 249 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 250 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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[181] | 251 | |
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| 252 | PATH_monitoring_file="" |
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[2] | 253 | eval monitoring_file=monitoring01_${compname}_\${RESOL_${comp}}.cfg > /dev/null 2>&1 |
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[251] | 254 | if [[ -d ${CARD_DIR}/POST && -f ${CARD_DIR}/POST/monitoring01_${compname}.cfg ]] ; then |
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[252] | 255 | PATH_monitoring_file=${CARD_DIR}/POST/monitoring01_${compname}.cfg |
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[181] | 256 | elif [ -f ${FER_ATLAS}/${monitoring_file} ] ; then |
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| 257 | PATH_monitoring_file=${FER_ATLAS}/${monitoring_file} |
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| 258 | else |
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[251] | 259 | IGCM_debug_Print 1 "No monitoring file found for this component. Was expecting ${monitoring_file}" |
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| 260 | IGCM_debug_Print 1 "Step to next component" |
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| 261 | continue |
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[181] | 262 | fi |
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[2] | 263 | # |
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[181] | 264 | if [ X${PATH_monitoring_file} != X"" ] ; then |
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[250] | 265 | IGCM_debug_Print 1 "Monitoring file used : ${PATH_monitoring_file}" |
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[134] | 266 | IGCM_debug_Print 1 "Determine which files we need." |
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[181] | 267 | . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO |
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| 268 | liste_file_monitoring=$( . monitoring01 -q -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO ) |
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[102] | 269 | fi |
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[2] | 270 | # |
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| 271 | if [ ! "X${liste_file_monitoring}" = X ] ; then |
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[35] | 272 | IGCM_sys_Get /l liste_file_monitoring ${RUN_DIR} |
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[250] | 273 | IGCM_debug_Print 1 "monitoring01 -c ${CARD_DIR} -p ${comp} --time -t \"${config_UserChoices_JobName} monitoring\" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} ." |
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| 274 | IGCM_debug_Print 1 "monitoring01 starts ................................................." |
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[181] | 275 | monitoring01 -c ${CARD_DIR} -p ${comp} --time -t "${config_UserChoices_JobName} monitoring" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} . |
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[102] | 276 | else |
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| 277 | IGCM_debug_Print 1 "No time series detected by this command :" |
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[181] | 278 | IGCM_debug_Print 1 "monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO" |
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| 279 | . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_MO |
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[2] | 280 | fi |
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| 281 | # |
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| 282 | done |
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| 283 | |
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| 284 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 285 | |
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| 286 | # Save files |
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| 287 | IGCM_sys_Put_Dir MONITORING ${R_SAVE} |
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| 288 | |
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| 289 | # Dods copy |
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| 290 | IGCM_sys_Put_Dods MONITORING |
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[203] | 291 | |
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| 292 | # Clean RUN_DIR_PATH (necessary for cesium) |
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| 293 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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