[2] | 1 | #-Q- platine #!/usr/bin/ksh |
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[196] | 2 | #-Q- platine ################### |
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[2] | 3 | #-Q- platine ## PLATINE CEA ## |
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[196] | 4 | #-Q- platine ################### |
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[2] | 5 | #-Q- platine #BSUB -J TS # Nom du job |
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| 6 | #-Q- platine #BSUB -N # message a la fin du job |
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| 7 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 8 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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[149] | 9 | #-Q- platine #BSUB -q post # Passage en queue post |
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[59] | 10 | #-Q- sx8brodie #!/bin/ksh |
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[2] | 11 | #-Q- sx8brodie ####################### |
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| 12 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 13 | #-Q- sx8brodie ####################### |
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[58] | 14 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 15 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
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[58] | 16 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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[62] | 17 | #-Q- sx8brodie # @ job_name = TS |
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[58] | 18 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 19 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 20 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 21 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 22 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 23 | #-Q- sx8brodie # @ notification = error |
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[213] | 24 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[68] | 25 | #-Q- aix6 #!/bin/ksh |
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| 26 | #-Q- aix6 ####################### |
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| 27 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 28 | #-Q- aix6 ####################### |
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| 29 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 30 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
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[68] | 31 | #-Q- aix6 # Nom du travail LoadLeveler |
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[78] | 32 | #-Q- aix6 # @ job_name = TS |
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[68] | 33 | #-Q- aix6 # Fichier de sortie standard du travail |
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| 34 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 35 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 36 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 37 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 38 | #-Q- aix6 # @ notification = error |
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[213] | 39 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[68] | 40 | #-Q- aix6 # @ queue |
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[58] | 41 | #-Q- sx8brodie # @ queue |
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[2] | 42 | #-Q- sx8mercure #!/bin/ksh |
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| 43 | #-Q- sx8mercure ###################### |
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| 44 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 45 | #-Q- sx8mercure ###################### |
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| 46 | #-Q- sx8mercure #PBS -N TS # Nom du job |
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| 47 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 48 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 49 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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[189] | 50 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures |
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[299] | 51 | #-Q- sx8mercure #PBS -q scalaire |
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[172] | 52 | #-Q- sx9mercure #!/bin/ksh |
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| 53 | #-Q- sx9mercure ###################### |
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| 54 | #-Q- sx9mercure ## SX9MERCURE CEA ## |
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| 55 | #-Q- sx9mercure ###################### |
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[257] | 56 | #-Q- sx9mercure #PBS -N TS # Nom du job |
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| 57 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 58 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 59 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 60 | #-Q- sx9mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures |
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[298] | 61 | #-Q- sx9mercure #PBS -q scalaire |
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[222] | 62 | #-Q- titane #!/bin/ksh |
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| 63 | #-Q- titane ###################### |
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| 64 | #-Q- titane ## TITANE CEA ## |
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| 65 | #-Q- titane ###################### |
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| 66 | #-Q- titane #MSUB -r TS # Nom du job |
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| 67 | #-Q- titane #MSUB -N 1 # Reservation du noeud |
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| 68 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 69 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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| 70 | #-Q- titane #MSUB -E "-j o" |
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| 71 | #-Q- titane #MSUB -E "-S /bin/ksh" |
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| 72 | #-Q- titane ##MSUB -e nco.out # Sortie standard |
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| 73 | #-Q- titane ##MSUB -o nco.out # Sortie standard |
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[287] | 74 | #-Q- lxiv8 ###################### |
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| 75 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 76 | #-Q- lxiv8 ###################### |
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| 77 | #-Q- lxiv8 #PBS -N TS |
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| 78 | #-Q- lxiv8 #PBS -m a |
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| 79 | #-Q- lxiv8 #PBS -j oe |
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| 80 | #-Q- lxiv8 #PBS -q medium |
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| 81 | #-Q- lxiv8 #PBS -o TS.$$ |
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| 82 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[2] | 83 | #-Q- default #!/bin/ksh |
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| 84 | #-Q- default ################## |
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| 85 | #-Q- default ## DEFAULT HOST ## |
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| 86 | #-Q- default ################## |
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| 87 | |
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[108] | 88 | # $Date$ |
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| 89 | # $Author$ |
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| 90 | # $Revision$ |
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| 91 | # IPSL (2006) |
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| 92 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 93 | |
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| 94 | #set -eu |
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[2] | 95 | #set -vx |
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| 96 | |
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| 97 | date |
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| 98 | |
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| 99 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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[108] | 100 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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[2] | 101 | |
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| 102 | ######################################################################## |
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| 103 | |
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| 104 | #D- Flag to determine if this job in a standalone mode |
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| 105 | #D- Default : value from AA_job if any |
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| 106 | StandAlone=${StandAlone:=true} |
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| 107 | |
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[206] | 108 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 109 | #D- Default : value from AA_job if any |
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[229] | 110 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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| 111 | # WARNING for StandAlone used : To run this script on some machine, |
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| 112 | # you must check MirrorlibIGCM variable in sys library. |
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| 113 | # If this variable is true, you must use libIGCM_POST path instead |
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| 114 | # of your running libIGCM directory. |
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[206] | 115 | |
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| 116 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
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[213] | 117 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
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[209] | 118 | CompletedFlag=${CompletedFlag:=} |
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[135] | 119 | |
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[213] | 120 | #D- Flag to determine task type this script will perform. |
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| 121 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
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| 122 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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[257] | 123 | TsTask=${TsTask:=2D} |
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[267] | 124 | if [ X${TsTask} = Xempty ] ; then |
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| 125 | TsTask="" |
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| 126 | fi |
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[213] | 127 | |
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| 128 | #D- Flag to determine if rebuild process has been performed asynchronously |
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| 129 | #D- Possible value true or false. |
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| 130 | #D- If true raw files has allready been patched by rebuild job |
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| 131 | #D- If false create_ts will patch the raw files |
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| 132 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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| 133 | RebuildFrequency=${RebuildFrequency:=true} |
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| 134 | |
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[2] | 135 | #D- Flag to determine job's output directory |
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| 136 | #D- Default : value from libIGCM_post.ksh if any |
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| 137 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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| 138 | |
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| 139 | #D- Increased verbosity (1, 2, 3) |
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| 140 | #D- Default : value from AA_job if any |
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| 141 | Verbosity=${Verbosity:=3} |
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| 142 | |
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| 143 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 144 | #D- Default : value from AA_job if any |
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| 145 | DEBUG_debug=${DEBUG_debug:=false} |
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| 146 | |
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| 147 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 148 | #D- Default : value from atmospheric driver if any |
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[254] | 149 | RESOL_ATM=ALL |
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[2] | 150 | |
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[257] | 151 | #D- Flag to determine surface resolution |
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| 152 | #D- Default : value from surface driver if any |
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| 153 | RESOL_SRF=ALL |
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| 154 | |
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| 155 | #D- Flag to determine surface resolution |
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| 156 | #D- Default : value from surface driver if any |
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| 157 | RESOL_SBG=ALL |
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| 158 | |
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[2] | 159 | #D- TEMPORARY Flag to determine ocean resolution |
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| 160 | #D- Default : value from ocean driver if any |
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| 161 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 162 | |
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| 163 | #D- TEMPORARY Flag to determine ice resolution |
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| 164 | #D- Default : value from ice driver if any |
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| 165 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 166 | |
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[178] | 167 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 168 | #D- Default : value from ice driver if any |
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| 169 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 170 | |
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[2] | 171 | ######################################################################## |
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| 172 | |
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[108] | 173 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 174 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 175 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 176 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 177 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 178 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 179 | #------- |
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| 180 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[2] | 181 | |
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| 182 | ######################################################################## |
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| 183 | |
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| 184 | #set -vx |
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| 185 | |
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| 186 | # Useful cleaning function |
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| 187 | MENAGE () |
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[81] | 188 | { |
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| 189 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
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[2] | 190 | } |
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| 191 | |
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| 192 | ######################################################################## |
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| 193 | |
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[202] | 194 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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[2] | 195 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 196 | |
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| 197 | if [ ${StandAlone} = true ] ; then |
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| 198 | CARD_DIR=${SUBMIT_DIR} |
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| 199 | else |
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| 200 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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| 201 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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| 202 | fi |
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| 203 | |
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| 204 | # |
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| 205 | # First of all |
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| 206 | # |
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| 207 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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| 208 | typeset option |
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| 209 | for option in ${config_UserChoices[*]} ; do |
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| 210 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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| 211 | done |
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| 212 | # |
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| 213 | echo |
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| 214 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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| 215 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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| 216 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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| 217 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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[263] | 218 | IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName |
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| 219 | IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName |
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[2] | 220 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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| 221 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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| 222 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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| 223 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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| 224 | echo |
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| 225 | |
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| 226 | #================================== |
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[263] | 227 | #R_SAVE : Job output directory |
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| 228 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
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| 229 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
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| 230 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 231 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 232 | else |
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| 233 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 234 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 235 | fi |
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[2] | 236 | # |
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[149] | 237 | # Determine component to take care of depending on kind of task create_ts will perform |
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[2] | 238 | # |
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[149] | 239 | ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = XChunck3D ] ) && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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[2] | 240 | # |
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[149] | 241 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
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| 242 | # |
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[310] | 243 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
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[302] | 244 | |
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[2] | 245 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 246 | # |
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| 247 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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[149] | 248 | # |
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| 249 | # Determine Dimension of the produced time series : 2D or 3D |
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| 250 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
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| 251 | Dimension=2D |
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| 252 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
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| 253 | Dimension=3D |
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| 254 | else |
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| 255 | Dimension="" |
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| 256 | fi |
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[2] | 257 | |
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[149] | 258 | |
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[2] | 259 | ######################################################################## |
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| 260 | # |
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| 261 | # Depending on requested time series fill following variables : |
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| 262 | # |
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| 263 | # - LISTE_FILE_${comp}[*] |
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| 264 | # - LISTE_VARS_${file}[*] |
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| 265 | # - LISTE_AXIS_${file}[*] |
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| 266 | # - LISTE_PATCH_${file}[*] |
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| 267 | ######################################################################## |
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| 268 | |
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| 269 | # |
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| 270 | # For each selected component determine which files need post-processing |
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| 271 | # |
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| 272 | DoJob=false |
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| 273 | for comp in ${config_ListOfComponents[*]} ; do |
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| 274 | # |
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| 275 | ActiveComp=false |
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| 276 | # |
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| 277 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 278 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 279 | # |
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| 280 | card=${CARD_DIR}/COMP/${compname}.card |
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[149] | 281 | |
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[2] | 282 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 283 | # |
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| 284 | ListFilesName=${compname}_OutputFiles_List |
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| 285 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 286 | # |
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| 287 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 288 | # |
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| 289 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 290 | # |
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| 291 | # INITIALISATION |
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| 292 | # |
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[149] | 293 | typeset i |
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| 294 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = XChunck3D ] ) ; then |
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| 295 | ((NbFiles=${FlagToRead})) |
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[243] | 296 | ((i=${NbFiles})) |
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[149] | 297 | else |
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| 298 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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[243] | 299 | i=2 |
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[149] | 300 | fi |
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[2] | 301 | # |
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[243] | 302 | until [ $i -gt $NbFiles ]; do |
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[2] | 303 | # |
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[243] | 304 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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[2] | 305 | # |
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| 306 | if [ X${flag_post} != XNONE ] ; then |
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| 307 | # |
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[149] | 308 | # For each comp and each file who needs post-processing |
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| 309 | # determine which variables need time series. |
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| 310 | # |
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| 311 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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[236] | 312 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
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| 313 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
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[149] | 314 | # |
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[236] | 315 | # If TimeSeriesVars list is empty we skip |
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| 316 | # |
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[149] | 317 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 318 | # |
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| 319 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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[236] | 320 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
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[149] | 321 | (( i=i+3 )) |
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| 322 | continue |
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| 323 | # |
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| 324 | fi |
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[2] | 325 | # |
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[236] | 326 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
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| 327 | # |
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[237] | 328 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
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[236] | 329 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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[237] | 330 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
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[236] | 331 | (( i=i+3 )) |
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| 332 | continue |
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| 333 | fi |
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| 334 | # |
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| 335 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
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[149] | 336 | # |
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[189] | 337 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
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[149] | 338 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
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| 339 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
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| 340 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
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| 341 | (( i=i+3 )) |
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| 342 | continue |
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| 343 | fi |
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| 344 | fi |
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| 345 | # |
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[236] | 346 | # Now on we know we have things to do |
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| 347 | # |
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| 348 | |
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| 349 | # |
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[149] | 350 | # We need coordinates axis to properly fill produced time series |
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| 351 | # |
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| 352 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
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| 353 | # |
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| 354 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
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| 355 | # |
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| 356 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
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| 357 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
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| 358 | (( i=i+3 )) |
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| 359 | continue |
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| 360 | # |
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| 361 | fi |
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| 362 | # |
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| 363 | # We need LIST of variables not allready produced (useful for standalone mode) |
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| 364 | # |
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| 365 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
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| 366 | case ${FlagDir} in |
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| 367 | *Y) TS_Dir=TS_YE ;; |
---|
| 368 | *M) TS_Dir=TS_MO ;; |
---|
| 369 | *D) TS_Dir=TS_DA ;; |
---|
| 370 | HF) TS_Dir=TS_HF ;; |
---|
[265] | 371 | 3H) TS_Dir=TS_HF ;; |
---|
[149] | 372 | INS) TS_Dir=TS_INS ;; |
---|
| 373 | esac |
---|
| 374 | # |
---|
| 375 | count=0 |
---|
| 376 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
---|
| 377 | # |
---|
| 378 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 379 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
---|
| 380 | # |
---|
| 381 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
---|
| 382 | if [ ! $? = 0 ] ; then |
---|
| 383 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
---|
| 384 | ActiveComp=true |
---|
| 385 | (( count = count + 1 )) |
---|
| 386 | fi |
---|
| 387 | done |
---|
| 388 | # |
---|
| 389 | if [ ${count} -gt 0 ] ; then |
---|
| 390 | # |
---|
| 391 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
---|
| 392 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
---|
| 393 | # |
---|
[168] | 394 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
[149] | 395 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
---|
| 396 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
---|
| 397 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
---|
| 398 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
---|
| 399 | if [ Xload${Patch} != X ] ; then |
---|
| 400 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
---|
| 401 | eval load${Patch}=loaded |
---|
| 402 | fi |
---|
| 403 | done |
---|
| 404 | fi |
---|
| 405 | fi |
---|
| 406 | fi |
---|
[2] | 407 | fi |
---|
[149] | 408 | (( i=i+3 )) |
---|
[2] | 409 | done |
---|
| 410 | fi |
---|
[149] | 411 | # |
---|
[2] | 412 | if [ ${ActiveComp} = true ] ; then |
---|
| 413 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
---|
| 414 | fi |
---|
| 415 | done |
---|
| 416 | |
---|
| 417 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
---|
| 418 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
---|
| 419 | |
---|
| 420 | ######################################################################## |
---|
| 421 | # |
---|
| 422 | # DEFINE DATE FUNCTIONS |
---|
| 423 | # |
---|
| 424 | ######################################################################## |
---|
| 425 | |
---|
| 426 | # Give the end of the next $1 period from $2 date |
---|
| 427 | function create_ts_next_date { |
---|
| 428 | IGCM_debug_PushStack "create_ts_next_date" $@ |
---|
[88] | 429 | typeset Length |
---|
[29] | 430 | case ${config_UserChoices_PeriodLength} in |
---|
| 431 | *Y|*y) |
---|
| 432 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
---|
| 433 | IGCM_date_GetYearMonth ${1} year month |
---|
[287] | 434 | year=$( IGCM_date_SupressZeros ${year} ) |
---|
[29] | 435 | (( Length=0 )) |
---|
| 436 | (( i=0 )) |
---|
| 437 | until [ $i -ge $PeriodLengthInYears ] ; do |
---|
| 438 | (( Length = Length + $( IGCM_date_DaysInYear $(( year + i + 1 )) ) )) |
---|
| 439 | (( i=i+1 )) |
---|
| 440 | done |
---|
| 441 | ;; |
---|
| 442 | *M|*m) |
---|
| 443 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
---|
| 444 | IGCM_date_GetYearMonth ${1} year month |
---|
[287] | 445 | year=$( IGCM_date_SupressZeros ${year} ) |
---|
[64] | 446 | (( year0 = year )) |
---|
[29] | 447 | if [ $(( month + 1 )) -lt 13 ] ; then |
---|
| 448 | month0=$(( month + 1 )) |
---|
[2] | 449 | else |
---|
[29] | 450 | month0=$(( month + 1 - 12 )) |
---|
| 451 | (( year = year0 + 1 )) |
---|
| 452 | fi |
---|
| 453 | (( Length=0 )) |
---|
| 454 | (( i=0 )) |
---|
| 455 | until [ $i -ge $PeriodLengthInMonths ] ; do |
---|
| 456 | if [ $(( month0 + i )) -lt 13 ] ; then |
---|
| 457 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month0 + i )) ) )) |
---|
| 458 | else |
---|
| 459 | (( year = year0 + 1 )) |
---|
| 460 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month0 + i - 12 )) ) )) |
---|
| 461 | fi |
---|
| 462 | (( i=i+1 )) |
---|
| 463 | done |
---|
| 464 | ;; |
---|
[2] | 465 | *D|*d) |
---|
[29] | 466 | Length=$( echo ${config_UserChoices_PeriodLength} | sed -e "s/[dD]//" ) ;; |
---|
[2] | 467 | *) |
---|
[29] | 468 | IGCM_debug_Exit "create_ts " ${config_UserChoices_PeriodLength} " invalid PeriodLength : choose in 1Y, *M, *D." |
---|
[2] | 469 | IGCM_debug_Verif_Exit_Post ;; |
---|
| 470 | esac |
---|
| 471 | echo ${Length} |
---|
| 472 | |
---|
| 473 | IGCM_debug_PopStack "create_ts_next_date" |
---|
| 474 | } |
---|
| 475 | |
---|
| 476 | # Give the end of the actual $1 period from $2 date |
---|
| 477 | function create_ts_begin_date { |
---|
| 478 | IGCM_debug_PushStack "create_ts_begin_date" $@ |
---|
[88] | 479 | typeset Length |
---|
[29] | 480 | case ${config_UserChoices_PeriodLength} in |
---|
| 481 | *Y|*y) |
---|
| 482 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
---|
| 483 | IGCM_date_GetYearMonth ${1} year month |
---|
[287] | 484 | year=$( IGCM_date_SupressZeros ${year} ) |
---|
[29] | 485 | if [ X${2} = Xend ] ; then |
---|
| 486 | (( year = year - PeriodLengthInYears + 1)) |
---|
| 487 | fi |
---|
| 488 | (( Length=0 )) |
---|
| 489 | (( i=0 )) |
---|
| 490 | until [ $i -ge $PeriodLengthInYears ] ; do |
---|
| 491 | (( Length = Length + $( IGCM_date_DaysInYear $(( year + i )) ) )) |
---|
| 492 | (( i=i+1 )) |
---|
| 493 | done |
---|
| 494 | ;; |
---|
| 495 | *M|*m) |
---|
| 496 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
---|
| 497 | IGCM_date_GetYearMonth ${1} year month |
---|
[287] | 498 | year=$( IGCM_date_SupressZeros ${year} ) |
---|
[29] | 499 | if [ X${2} = Xend ] ; then |
---|
[64] | 500 | (( month = month - PeriodLengthInMonths + 1 )) |
---|
[29] | 501 | fi |
---|
[64] | 502 | (( year0 = year )) |
---|
[29] | 503 | if [ $month -le 0 ] ; then |
---|
[64] | 504 | (( month = month + 12 )) |
---|
[29] | 505 | year=$( printf "%04i\n" $(( year - 1 )) ) |
---|
| 506 | fi |
---|
| 507 | month=$( printf "%02i\n" ${month} ) |
---|
| 508 | (( Length=0 )) |
---|
| 509 | (( i=0 )) |
---|
| 510 | until [ $i -ge $PeriodLengthInMonths ] ; do |
---|
| 511 | if [ $(( month + i )) -lt 13 ] ; then |
---|
| 512 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month + i )) ) )) |
---|
| 513 | else |
---|
| 514 | (( year = year0 + 1 )) |
---|
| 515 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) )) |
---|
| 516 | fi |
---|
| 517 | (( i=i+1 )) |
---|
| 518 | done |
---|
| 519 | ;; |
---|
[2] | 520 | *D|*d) |
---|
[29] | 521 | Length=$( echo ${config_UserChoices_PeriodLength} | sed -e "s/[dD]//" ) ;; |
---|
[2] | 522 | *) |
---|
[29] | 523 | IGCM_debug_Exit "create_ts " ${config_UserChoices_PeriodLength} " invalid PeriodLength : choose in 1Y, *M, *D." |
---|
[2] | 524 | IGCM_debug_Verif_Exit_Post ;; |
---|
| 525 | esac |
---|
| 526 | echo ${Length} |
---|
| 527 | |
---|
| 528 | IGCM_debug_PopStack "create_ts_begin_date" |
---|
| 529 | } |
---|
| 530 | |
---|
| 531 | ######################################################################## |
---|
| 532 | # |
---|
| 533 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
---|
| 534 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
---|
| 535 | # |
---|
| 536 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
---|
| 537 | # - especially for IDRiS |
---|
| 538 | # - no special protection against "command too long" ! |
---|
| 539 | # - libIGCM_sys should handle that or modify following code part |
---|
| 540 | # |
---|
| 541 | ######################################################################## |
---|
| 542 | |
---|
| 543 | if [ ${StandAlone} != true ] ; then |
---|
| 544 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
---|
| 545 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
---|
| 546 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
---|
| 547 | |
---|
[149] | 548 | #if [ X${Running_Flag} = Xy ] ; then |
---|
| 549 | # # Time Series Job allready running |
---|
| 550 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
---|
| 551 | # exit |
---|
| 552 | #fi |
---|
[2] | 553 | # Now run.card know we are running |
---|
[149] | 554 | |
---|
| 555 | |
---|
| 556 | |
---|
| 557 | |
---|
[2] | 558 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
[149] | 559 | |
---|
| 560 | |
---|
| 561 | |
---|
| 562 | |
---|
| 563 | |
---|
[2] | 564 | # Get information from last execution |
---|
[149] | 565 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
| 566 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
| 567 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
[2] | 568 | fi |
---|
| 569 | |
---|
| 570 | # Is it the first submission or not ? |
---|
[149] | 571 | |
---|
| 572 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
---|
[2] | 573 | # First Time Series Submission |
---|
| 574 | FIRST_PASS=TRUE |
---|
[29] | 575 | Length=$( create_ts_begin_date ${DateBegin} begin) |
---|
[2] | 576 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
---|
| 577 | else |
---|
| 578 | # Last Completed Time Series |
---|
| 579 | FIRST_PASS=FALSE |
---|
| 580 | DATE_FIN_JOB_B=${CompletedFlag} |
---|
| 581 | date=${DateBegin}_${DATE_FIN_JOB_B} |
---|
| 582 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 583 | # |
---|
| 584 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 585 | # |
---|
| 586 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 587 | # |
---|
[81] | 588 | #set -A liste_file |
---|
| 589 | unset liste_file |
---|
[2] | 590 | # |
---|
| 591 | file_path=${R_SAVE}/${comp}/Analyse |
---|
| 592 | # |
---|
| 593 | i=0 |
---|
| 594 | file=${NULL_STR} |
---|
| 595 | # |
---|
| 596 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 597 | # |
---|
| 598 | # Determine in which output can we find file |
---|
| 599 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
| 600 | # |
---|
| 601 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 602 | case ${FlagDir} in |
---|
[29] | 603 | *Y) TS_Dir=TS_YE ;; |
---|
| 604 | *M) TS_Dir=TS_MO ;; |
---|
| 605 | *D) TS_Dir=TS_DA ;; |
---|
| 606 | HF) TS_Dir=TS_HF ;; |
---|
[265] | 607 | 3H) TS_Dir=TS_HF ;; |
---|
[29] | 608 | INS) TS_Dir=TS_INS ;; |
---|
[2] | 609 | esac |
---|
| 610 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 611 | # |
---|
[81] | 612 | #set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 613 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
[2] | 614 | # |
---|
| 615 | done |
---|
| 616 | done |
---|
| 617 | if [ X${file} != X${NULL_STR} ] ; then |
---|
| 618 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
[108] | 619 | ExitFlag=false |
---|
[2] | 620 | IGCM_debug_Verif_Exit_Post |
---|
| 621 | fi |
---|
| 622 | done |
---|
| 623 | # |
---|
| 624 | LEVEL=0 |
---|
| 625 | # |
---|
| 626 | fi |
---|
| 627 | |
---|
| 628 | ######################################################################## |
---|
| 629 | # |
---|
| 630 | # DEFINE LOOP PARAMETERS |
---|
| 631 | # |
---|
| 632 | ######################################################################## |
---|
| 633 | |
---|
| 634 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
| 635 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
| 636 | |
---|
| 637 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
| 638 | |
---|
| 639 | if [ ${DoJob} = true ] ; then |
---|
| 640 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
| 641 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
[29] | 642 | Length=$( create_ts_next_date ${DATE_COUNT} ) |
---|
[2] | 643 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
| 644 | done |
---|
| 645 | else |
---|
| 646 | NBRE_FILE_TOT=0 |
---|
| 647 | fi |
---|
| 648 | |
---|
| 649 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 650 | NBRE_TOUR=1 |
---|
| 651 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
| 652 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
| 653 | else |
---|
| 654 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
| 655 | fi |
---|
| 656 | |
---|
| 657 | CURRENT_LOOP=1 |
---|
| 658 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
| 659 | # WE HAVE 3 LEVELS |
---|
| 660 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 661 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 662 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 663 | |
---|
| 664 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
| 665 | |
---|
| 666 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 667 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 668 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
| 669 | |
---|
| 670 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
| 671 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
| 672 | else |
---|
[29] | 673 | Length=$( create_ts_next_date ${DATE_FIN_JOB_B_LOOP} ) |
---|
[2] | 674 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 675 | fi |
---|
| 676 | |
---|
| 677 | DATE_FIN=${PeriodDateEnd} |
---|
| 678 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
| 679 | |
---|
| 680 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 681 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 682 | |
---|
| 683 | LEVEL=1 |
---|
| 684 | DEPOT="TRUE" |
---|
| 685 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
| 686 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 687 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 688 | |
---|
| 689 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
[29] | 690 | Length=$( create_ts_next_date ${DATE_FIN_JOB_B_LOOP} ) |
---|
[2] | 691 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 692 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
| 693 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
| 694 | else |
---|
[29] | 695 | Length=$( create_ts_next_date ${DATE_FIN} ) |
---|
[2] | 696 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 697 | fi |
---|
| 698 | |
---|
| 699 | (( TotLength = 0 )) |
---|
| 700 | COMPTEUR=1 |
---|
| 701 | DATE_LOOP=${DATE_COURANTE} |
---|
| 702 | |
---|
| 703 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
| 704 | # |
---|
[29] | 705 | Length=$( create_ts_next_date ${DATE_LOOP} ) |
---|
[2] | 706 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
| 707 | (( TotLength = TotLength + Length )) |
---|
| 708 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 709 | # |
---|
| 710 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 711 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
| 712 | |
---|
| 713 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 714 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 715 | DEPOT="FALSE" |
---|
| 716 | LEVEL=2 |
---|
| 717 | else |
---|
| 718 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
[149] | 719 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
[2] | 720 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 721 | |
---|
[29] | 722 | Length=$( create_ts_next_date ${DATE_FIN} ) |
---|
[2] | 723 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 724 | DATE_FIN=${PeriodDateEnd} |
---|
| 725 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 726 | |
---|
| 727 | LEVEL=3 |
---|
| 728 | DEPOT="TRUE" |
---|
| 729 | FLAG_B="TRUE" |
---|
| 730 | fi |
---|
| 731 | |
---|
| 732 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
| 733 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 734 | # |
---|
| 735 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 736 | # |
---|
| 737 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 738 | # |
---|
| 739 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 740 | # |
---|
| 741 | i=0 |
---|
| 742 | # |
---|
| 743 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 744 | # |
---|
| 745 | # Determine in which output can we find file |
---|
| 746 | # IE : Output/MO or Output/DA or ... |
---|
| 747 | # |
---|
| 748 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 749 | case ${FlagDir} in |
---|
[29] | 750 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
| 751 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
[2] | 752 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
| 753 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
[265] | 754 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
[2] | 755 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
| 756 | *) |
---|
| 757 | IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
| 758 | IGCM_sys_Exit "Job create_ts" ;; |
---|
| 759 | esac |
---|
| 760 | |
---|
| 761 | # Initialize array |
---|
[81] | 762 | #set -A liste_file |
---|
| 763 | #set -A liste_file_tmp |
---|
| 764 | unset liste_file |
---|
| 765 | unset liste_file_tmp |
---|
[2] | 766 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
| 767 | |
---|
| 768 | COMPTEUR=1 |
---|
| 769 | DATE_LOOP=${DATE_COURANTE} |
---|
| 770 | |
---|
| 771 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
| 772 | # |
---|
[29] | 773 | Length1=$( create_ts_begin_date ${DATE_LOOP} end) |
---|
[2] | 774 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
| 775 | |
---|
[29] | 776 | Length2=$( create_ts_next_date ${DATE_LOOP} end) |
---|
[2] | 777 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
| 778 | |
---|
[81] | 779 | #set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 780 | #set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 781 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 782 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
[2] | 783 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 784 | # |
---|
| 785 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 786 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
| 787 | |
---|
| 788 | # Get selected files |
---|
| 789 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
[108] | 790 | ExitFlag=false |
---|
[2] | 791 | IGCM_debug_Verif_Exit_Post |
---|
| 792 | |
---|
| 793 | # Apply IGCM_Patch if needed |
---|
[168] | 794 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
[149] | 795 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 796 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
| 797 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 798 | IGCM_${Patch} ${file_t} |
---|
| 799 | done |
---|
[2] | 800 | done |
---|
[149] | 801 | fi |
---|
[2] | 802 | fi |
---|
| 803 | |
---|
| 804 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
| 805 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
[29] | 806 | Length=$( create_ts_begin_date ${DATE_COURANTE} end) |
---|
[2] | 807 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
| 808 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
| 809 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
| 810 | |
---|
| 811 | liste_coord=" " |
---|
| 812 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
| 813 | liste_coord=${liste_coord}${axis}"," |
---|
| 814 | done |
---|
| 815 | |
---|
| 816 | # Time axis must be the last dimension |
---|
| 817 | time_axis=${axis} |
---|
| 818 | |
---|
| 819 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
| 820 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 821 | # |
---|
| 822 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 823 | # |
---|
| 824 | # # Change time axis name to be CF compliant |
---|
| 825 | # if [ ${time_axis} != time_counter ]; then |
---|
| 826 | # IGCM_sys_ncrename -O -v ${time_axis},time_counter ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 827 | # fi |
---|
| 828 | # |
---|
| 829 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
| 830 | # WE CONCATENATE WITH EXISTING FILES |
---|
| 831 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
| 832 | file2=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 833 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
| 834 | IGCM_sys_ncrcat --hst ${file1} ${file2} ${file_out} |
---|
| 835 | # |
---|
| 836 | IGCM_sys_Rm ${file1} ${file2} |
---|
| 837 | fi |
---|
[287] | 838 | |
---|
[2] | 839 | # |
---|
| 840 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
| 841 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
| 842 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 843 | #${ncatted} -a modulo,time_counter,c,c," " ${file_out} |
---|
| 844 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
[287] | 845 | # |
---|
[2] | 846 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 847 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
[287] | 848 | # |
---|
| 849 | if [ ${FlagDir} = "1M" ] ; then |
---|
| 850 | # Compute yearly average considering calendar |
---|
| 851 | file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc |
---|
| 852 | file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc |
---|
| 853 | # |
---|
[295] | 854 | # Set date of the mid year to 01/07 at 00:00 |
---|
[294] | 855 | # better than default where the date information in the outputfile is the date of the last contributing time step in the input file |
---|
[295] | 856 | IGCM_sys_cdo -settime,00:00 -setday,1 -setmon,7 -settunits,days -divdpy -yearsum -muldpm ${file_out} ${file_out_YE} |
---|
[287] | 857 | # |
---|
| 858 | eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE} |
---|
| 859 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE} |
---|
| 860 | fi |
---|
| 861 | # |
---|
[2] | 862 | IGCM_sys_Rm ${file_out} |
---|
| 863 | # |
---|
| 864 | fi |
---|
| 865 | # |
---|
[108] | 866 | ExitFlag=false |
---|
[2] | 867 | IGCM_debug_Verif_Exit_Post |
---|
| 868 | done # for var in ${liste_var} ; do |
---|
| 869 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
| 870 | done # for file in ${liste_file_brut} do |
---|
| 871 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
[108] | 872 | ExitFlag=false |
---|
[2] | 873 | IGCM_debug_Verif_Exit_Post |
---|
| 874 | # GO AHEAD IN DEEPEST LOOP |
---|
| 875 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
| 876 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
| 877 | # FINISH |
---|
| 878 | |
---|
| 879 | # DODS copy |
---|
| 880 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[287] | 881 | for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do |
---|
[67] | 882 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 883 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
[2] | 884 | done |
---|
| 885 | done |
---|
| 886 | |
---|
| 887 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
[213] | 888 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
[2] | 889 | |
---|
[213] | 890 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
---|
[2] | 891 | export listVarEnv |
---|
| 892 | |
---|
| 893 | #D- |
---|
| 894 | # -------------------------------------------------------------------- |
---|
| 895 | #D- Test if all was right |
---|
| 896 | # -------------------------------------------------------------------- |
---|
| 897 | IGCM_debug_Verif_Exit_Post |
---|
| 898 | # -------------------------------------------------------------------- |
---|
| 899 | #D- Submit MONITORING |
---|
| 900 | # -------------------------------------------------------------------- |
---|
[168] | 901 | ( [ X${TsTask} = X2D ] || [ X${TsTask} = X ] ) && IGCM_sys_QsubPost monitoring |
---|
[2] | 902 | |
---|
| 903 | #D- |
---|
| 904 | # -------------------------------------------------------------------- |
---|
| 905 | #D- Update the run.card |
---|
| 906 | # -------------------------------------------------------------------- |
---|
| 907 | if [ ${StandAlone} != true ] ; then |
---|
| 908 | # Put in run.card end period of time series |
---|
[279] | 909 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
[2] | 910 | # We have finish the job ! |
---|
| 911 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
| 912 | fi |
---|
[203] | 913 | |
---|
| 914 | # Clean RUN_DIR_PATH (necessary for cesium) |
---|
| 915 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
| 916 | |
---|
[2] | 917 | date |
---|