source: tags/libIGCM_v1_8-old/AA_atlas_PISCES

Last change on this file was 316, checked in by mafoipsl, 14 years ago

Use cesium for SX9 post processing. Add hostname to know where we run.
File size: 8.7 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_PIS        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ##################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ##################
15#-Q- platine #BSUB -J ATL_PIS           # Nom du job
16#-Q- platine #BSUB -N                   # message a la fin du job
17#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 1:00              # Limite temps
19#-Q- platine #BSUB -q post              # Passage en queue post
20#-Q- sx8brodie #!/bin/ksh
21#-Q- sx8brodie #######################
22#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
23#-Q- sx8brodie #######################
24#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
25#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
26#-Q- sx8brodie # Nom du travail LoadLeveler
27#-Q- sx8brodie # @ job_name   = ATL_PIS
28#-Q- sx8brodie # Fichier de sortie standard du travail       
29#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
30#-Q- sx8brodie # Fichier de sortie d'erreur du travail
31#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
32#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
33#-Q- sx8brodie # @ notification = error
34#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX
35#-Q- sx8brodie # @ queue
36#-Q- aix6 #!/bin/ksh
37#-Q- aix6 #######################
38#-Q- aix6 ##   VARGAS   IDRIS  ##
39#-Q- aix6 #######################
40#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
41#-Q- aix6 # @ wall_clock_limit = 10:00:00
42#-Q- aix6 # Nom du travail LoadLeveler
43#-Q- aix6 # @ job_name   = ATL_PIS
44#-Q- aix6 # Fichier de sortie standard du travail       
45#-Q- aix6 # @ output     = $(job_name).$(jobid)
46#-Q- aix6 # Fichier de sortie d'erreur du travail
47#-Q- aix6 # @ error      =  $(job_name).$(jobid)
48#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
49#-Q- aix6 # @ notification = error
50#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX
51#-Q- aix6 # @ queue
52#-Q- sx8mercure #!/bin/ksh
53#-Q- sx8mercure ######################
54#-Q- sx8mercure ## SX8MERCURE   CEA ##
55#-Q- sx8mercure ######################
56#-Q- sx8mercure #PBS -N  ATL_PIS             # Nom du job
57#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
58#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
59#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
60#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
61#-Q- sx8mercure #PBS -q scalaire
62#-Q- sx9mercure #!/bin/ksh
63#-Q- sx9mercure #########################
64#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
65#-Q- sx9mercure #########################
66#-Q- sx9mercure #MSUB -r ATL_PIS        # Nom du job               
67#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
68#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
69#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
70#-Q- sx9mercure #MSUB -E "-j o"
71#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
72#-Q- titane #!/bin/ksh
73#-Q- titane ######################
74#-Q- titane ## TITANE   CEA ##
75#-Q- titane ######################
76#-Q- titane #MSUB -r ATL_PIS        # Nom du job               
77#-Q- titane #MSUB -N 1              # Reservation du noeud
78#-Q- titane #MSUB -n 1              # Reservation du processus
79#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
80#-Q- titane #MSUB -E "-j o"
81#-Q- titane #MSUB -E "-S /bin/ksh"
82#-Q- titane ##MSUB -e nco.out        # Sortie standard
83#-Q- titane ##MSUB -o nco.out        # Sortie standard
84#-Q- default #!/bin/ksh
85#-Q- default ##################
86#-Q- default ## DEFAULT HOST ##
87#-Q- default ##################
88
89# $Date: 2010-01-22 12:24:21 +0100 (Fri, 22 Jan 2010) $
90# $Author: aclsce $
91# $Revision: 215 $
92# IPSL (2006)
93#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
94
95#set -eu
96#set -vx
97
98date
99
100#-Q- sx8brodie export OMP_NUM_THREADS=1
101#-Q- aix6 export OMP_NUM_THREADS=1
102
103########################################################################
104
105. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
106      ( ${DEBUG_debug} ) && IGCM_debug_Check
107. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
108     ( ${DEBUG_debug} ) && IGCM_card_Check
109. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
110     ( ${DEBUG_debug} ) && IGCM_date_Check
111#-------
112. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
113
114########################################################################
115
116#set -vx
117
118IGCM_sys_MkdirWork ${RUN_DIR_PATH}
119IGCM_sys_Cd ${RUN_DIR_PATH}
120
121if [ ${StandAlone} = true ] ; then
122    CARD_DIR=${SUBMIT_DIR}
123else
124    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
125    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
126fi
127#
128# First of all
129#
130IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
131typeset option
132for option in ${config_UserChoices[*]} ; do
133    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
134done
135
136#
137echo
138IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
139IGCM_debug_PrintVariables 3 config_UserChoices_JobName
140IGCM_debug_PrintVariables 3 config_UserChoices_LongName
141IGCM_debug_PrintVariables 3 config_UserChoices_TagName
142IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
143IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
144IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
145IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
146IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
147IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
148echo
149
150#==================================
151#R_SAVE : Job output directory
152if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
153    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
154    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
155    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
156else
157    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
158    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
159fi
160#
161
162R_ATLAS=ATLAS/SE_${YEARS}
163R_OUT_MBG=${R_SAVE}/MBG
164
165RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS}
166IGCM_sys_MkdirWork ${RUN_DIR}
167IGCM_sys_Cd ${RUN_DIR}
168
169# --------------------------------------------
170# Insert your commands between III...III lines
171# and precise produced directories to save
172# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
173
174IGCM_sys_Get ${R_OUT_MBG}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR}
175IGCM_sys_Get ${R_OUT_MBG}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR}
176
177atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \
178                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
179atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg  \
180                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
181
182# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
183
184# Put ferret journal files together
185for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do
186    echo -e "\n\n################################" ;
187    echo -e "$file\n" ; cat $file ;
188done  > ${R_ATLAS}/MBG_T/allferretscript.txt
189
190for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do
191    echo -e "\n\n################################" ;
192    echo -e "$file\n" ; cat $file ;
193done  > ${R_ATLAS}/MBG_F/allferretscript.txt
194# Clear some files
195find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
196
197# Save files
198IGCM_sys_Put_Dir ATLAS ${R_SAVE}
199
200IGCM_sys_Rm -Rf ATLAS
201IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
202IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
203
204# DODS copy
205IGCM_sys_TestDirArchive ${R_SAVE}/${R_ATLAS}
206[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
207
208# Clean RUN_DIR_PATH (necessary for cesium)
209IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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