source: tags/libIGCM_v1_8-old/AA_rebuild_fromArchive

Last change on this file was 354, checked in by mmaipsl, 14 years ago

First test with mercure-old. Not verified yet !
I will commit modipsl/util/mod.def file and send an email when it is OK.
File size: 10.1 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDARCH    # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ###################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ###################
15#-Q- platine #BSUB -J REBUILDARCH            # Nom du job
16#-Q- platine #BSUB -N                        # message a la fin du job
17#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 4:00                   # Limite temps
19#-Q- platine #BSUB -q post                   # Passage en queue post
20#-Q- sx8brodie #!/bin/ksh
21#-Q- sx8brodie #######################
22#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
23#-Q- sx8brodie #######################
24#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
25#-Q- sx8brodie # @ wall_clock_limit = 20:00:00
26#-Q- sx8brodie # Nom du travail LoadLeveler
27#-Q- sx8brodie # @ job_name   = REBUILDARCH
28#-Q- sx8brodie # Fichier de sortie standard du travail       
29#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
30#-Q- sx8brodie # Fichier de sortie d'erreur du travail
31#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
32#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
33#-Q- sx8brodie # @ notification = error
34#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER ; $RebuildFromArchive ; $config_UserChoices_JobName ; $R_SAVE
35#-Q- sx8brodie # @ queue
36#-Q- aix6 #!/bin/ksh
37#-Q- aix6 #######################
38#-Q- aix6 ##   VARGAS   IDRIS  ##
39#-Q- aix6 #######################
40#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
41#-Q- aix6 # @ wall_clock_limit = 20:00:00
42#-Q- aix6 # Nom du travail LoadLeveler
43#-Q- aix6 # @ job_name   = REBUILDARCH
44#-Q- aix6 # Fichier de sortie standard du travail
45#-Q- aix6 # @ output     = $(job_name).$(jobid)
46#-Q- aix6 # Fichier de sortie d'erreur du travail
47#-Q- aix6 # @ error      =  $(job_name).$(jobid)
48#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
49#-Q- aix6 # @ notification = error
50#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER ; $RebuildFromArchive ; $config_UserChoices_JobName ; $R_SAVE
51#-Q- aix6 # @ queue
52#-Q- sx8mercure #!/bin/ksh
53#-Q- sx8mercure ######################
54#-Q- sx8mercure ## SX8MERCURE   CEA ##
55#-Q- sx8mercure ######################
56#-Q- sx8mercure #PBS -N REBUILDARCH          # Nom du job
57#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
58#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
59#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
60#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
61#-Q- sx8mercure #PBS -q scalaire
62#-Q- sx9mercure #!/bin/ksh
63#-Q- sx9mercure ######################
64#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
65#-Q- sx9mercure ######################
66#-Q- sx9mercure #MSUB -r REBUILDARCH    # Nom du job               
67#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
68#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
69#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
70#-Q- sx9mercure #MSUB -E "-j o"
71#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
72#-Q- titane #!/bin/ksh
73#-Q- titane ######################
74#-Q- titane ## TITANE   CEA ##
75#-Q- titane ######################
76#-Q- titane #MSUB -r REBUILDARCH    # Nom du job               
77#-Q- titane #MSUB -N 1              # Reservation du noeud
78#-Q- titane #MSUB -n 1              # Reservation du processus
79#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
80#-Q- titane #MSUB -E "-j o"
81#-Q- titane #MSUB -E "-S /bin/ksh"
82#-Q- titane ##MSUB -e nco.out        # Sortie standard
83#-Q- titane ##MSUB -o nco.out        # Sortie standard
84#-Q- lxiv8 ######################
85#-Q- lxiv8 ## OBELIX      LSCE ##
86#-Q- lxiv8 ######################
87#-Q- lxiv8 #PBS -N REBUILDARCH
88#-Q- lxiv8 #PBS -m a
89#-Q- lxiv8 #PBS -j oe
90#-Q- lxiv8 #PBS -q medium
91#-Q- lxiv8 #PBS -o REBUILDARCH.$$
92#-Q- lxiv8 #PBS -S /bin/ksh
93#-Q- default #!/bin/ksh
94#-Q- default ##################
95#-Q- default ## DEFAULT HOST ##
96#-Q- default ##################
97
98# $Date: $
99# $Author: $
100# $Revision: $
101# IPSL (2006)
102#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
103
104#set -eu
105#set -vx
106
107date
108
109#-Q- sx8brodie export OMP_NUM_THREADS=1
110#-Q- aix6 export OMP_NUM_THREADS=1
111
112########################################################################
113
114#D- Flag to determine if this job in a standalone mode
115#D- Default : value from AA_job if any
116StandAlone=${StandAlone:=true}
117
118#D- Low level debug : to bypass lib test checks and stack construction
119#D- Default : value from AA_job if any
120libIGCM=${libIGCM:=::modipsl::/libIGCM}
121# WARNING for StandAlone used : To run this script on some machine,
122# you must check MirrorlibIGCM variable in sys library.
123# If this variable is true, you must use libIGCM_POST path instead
124# of your running libIGCM directory.
125
126#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
127MASTER=${MASTER:=mercure-old|titane|brodie|vargas}
128
129#D- Do we rebuild parallel output from archive or from ${BIGDIR}
130#D- Default : value from AA_job if any
131RebuildFromArchive=${RebuildFromArchive:=true}
132
133#D- Directory where files we need to rebuild are store
134#D- Default : value from AA_job if any
135#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
136#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
137#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
138#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
139REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
140
141#D- How many directory to rebuild we have to consider
142#D- Default : value from AA_job if any
143NbRebuildDir=${NbRebuildDir:=1000}
144
145#D- Suffix date we will use to determine which directory to rebuild
146#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
147#D- Default : value from AA_job if any
148LastPeriodForRebuild=${PeriodDateBegin:=18901201}
149
150#D- Name of the job to work in a standalone mode (needed for mask patch)
151#D- Default : value from config.card if any
152config_UserChoices_JobName=${config_UserChoices_JobName:=name_of_the_job}
153
154#D- Directory where output data are stored (needed in standalone mode for mask patch)
155#D- Default : value from AA_job if any
156R_SAVE=${R_SAVE:=/path/to/your/ARCHIVE/FILES}
157
158#D- Flag to determine atlas job's output directory
159#D- Default : value from libIGCM_post.ksh if any
160POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
161
162#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
163libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
164
165#D- Increased verbosity (1, 2, 3)
166#D- Default : value from AA_job if any
167Verbosity=${Verbosity:=3}
168
169#D- Low level debug : to bypass lib test checks and stack construction
170#D- Default : value from AA_job if any
171DEBUG_debug=${DEBUG_debug:=false}
172
173#D- TEMPORARY Flag to determine atmospheric resolution
174#D- Default : value from atmospheric driver if any
175RESOL_ATM=${RESOL_ATM:=ALL}
176
177#D- TEMPORARY Flag to determine ocean resolution
178#D- Default : value from ocean driver if any
179RESOL_OCE=${RESOL_OCE:=ORCA2}
180
181#D- TEMPORARY Flag to determine ice resolution
182#D- Default : value from ice driver if any
183RESOL_ICE=${RESOL_ICE:=ORCA2}
184
185#D- TEMPORARY Flag to determine biogeochemistry resolution
186#D- Default : value from ice driver if any
187RESOL_MBG=${RESOL_MBG:=ORCA2}
188
189#D- Flag to determine surface resolution
190#D- Default : value from surface driver if any
191RESOL_SRF=ALL
192
193#D- Flag to determine surface resolution
194#D- Default : value from surface driver if any
195RESOL_SBG=ALL
196
197########################################################################
198
199. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
200      ( ${DEBUG_debug} ) && IGCM_debug_Check
201. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
202     ( ${DEBUG_debug} ) && IGCM_card_Check
203. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
204     ( ${DEBUG_debug} ) && IGCM_date_Check
205#-------
206. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
207. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
208
209########################################################################
210
211#set -vx
212
213RUN_DIR=${RUN_DIR_PATH}
214IGCM_sys_MkdirWork ${RUN_DIR}
215IGCM_sys_Cd ${RUN_DIR}
216#
217if [ ${RebuildFromArchive} = true ] ; then
218    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
219else
220    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
221fi
222#
223
224for directory in ${ListAllRebuildDir} ; do
225    #
226    if [ ${RebuildFromArchive} = true ] ; then
227        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
228    else
229        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
230    fi
231    #
232    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
233
234    # --------------------------------------------------------------------
235    # Source function include in the REBUILD ksh and rebuild
236    # --------------------------------------------------------------------
237    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
238    IGCM_FlushRebuild
239    #
240    IGCM_sys_Cd ${RUN_DIR}
241    # Clean Up
242    # local clean up
243    IGCM_sys_Rm -rf $( basename ${directory} )
244    # remote clean up
245    if [ ${RebuildFromArchive} = true ] ; then
246        IGCM_sys_RshArchive rm -rf ${directory}
247    else
248        IGCM_sys_Rm -rf ${directory}
249    fi
250done
251
252# Clean RUN_DIR_PATH (necessary for cesium only)
253IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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