source: tags/libIGCM_v1_8-old/AA_rebuild_fromWorkdir

Last change on this file was 354, checked in by mmaipsl, 14 years ago

First test with mercure-old. Not verified yet !
I will commit modipsl/util/mod.def file and send an email when it is OK.
File size: 10.1 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDWRK     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ###################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ###################
15#-Q- platine #BSUB -J REBUILDWRK             # Nom du job
16#-Q- platine #BSUB -N                        # message a la fin du job
17#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 4:00                   # Limite temps
19#-Q- platine #BSUB -q post                   # Passage en queue post
20#-Q- sx8brodie #!/bin/ksh
21#-Q- sx8brodie #######################
22#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
23#-Q- sx8brodie #######################
24#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
25#-Q- sx8brodie # @ wall_clock_limit = 20:00:00
26#-Q- sx8brodie # Nom du travail LoadLeveler
27#-Q- sx8brodie # @ job_name   = REBUILDWRK
28#-Q- sx8brodie # Fichier de sortie standard du travail       
29#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
30#-Q- sx8brodie # Fichier de sortie d'erreur du travail
31#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
32#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
33#-Q- sx8brodie # @ notification = error
34#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER ; $RebuildFromArchive ; $config_UserChoices_JobName ; $R_SAVE
35#-Q- sx8brodie # @ queue
36#-Q- aix6 #!/bin/ksh
37#-Q- aix6 #######################
38#-Q- aix6 ##   VARGAS   IDRIS  ##
39#-Q- aix6 #######################
40#-Q- aix6 # @ class = archive
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 20:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = REBUILDWRK
45#-Q- aix6 # Fichier de sortie standard du travail
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER ; $RebuildFromArchive ; $config_UserChoices_JobName ; $R_SAVE
52#-Q- aix6 # @ queue
53#-Q- sx8mercure #!/bin/ksh
54#-Q- sx8mercure ######################
55#-Q- sx8mercure ## SX8MERCURE   CEA ##
56#-Q- sx8mercure ######################
57#-Q- sx8mercure #PBS -N REBUILDWRK           # Nom du job
58#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
59#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
60#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
61#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
62#-Q- sx8mercure #PBS -q scalaire
63#-Q- sx9mercure #!/bin/ksh
64#-Q- sx9mercure ######################
65#-Q- sx9mercure ## CESIUM   CEA ##
66#-Q- sx9mercure ######################
67#-Q- sx9mercure #MSUB -r REBUILDWRK     # Nom du job               
68#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
69#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
70#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
71#-Q- sx9mercure #MSUB -E "-j o"
72#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
73#-Q- titane #!/bin/ksh
74#-Q- titane ######################
75#-Q- titane ## TITANE   CEA ##
76#-Q- titane ######################
77#-Q- titane #MSUB -r REBUILDWRK     # Nom du job               
78#-Q- titane #MSUB -N 1              # Reservation du noeud
79#-Q- titane #MSUB -n 1              # Reservation du processus
80#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
81#-Q- titane #MSUB -E "-j o"
82#-Q- titane #MSUB -E "-S /bin/ksh"
83#-Q- titane ##MSUB -e nco.out        # Sortie standard
84#-Q- titane ##MSUB -o nco.out        # Sortie standard
85#-Q- lxiv8 ######################
86#-Q- lxiv8 ## OBELIX      LSCE ##
87#-Q- lxiv8 ######################
88#-Q- lxiv8 #PBS -N REBUILDWRK
89#-Q- lxiv8 #PBS -m a
90#-Q- lxiv8 #PBS -j oe
91#-Q- lxiv8 #PBS -q medium
92#-Q- lxiv8 #PBS -o REBUILDWRK.$$
93#-Q- lxiv8 #PBS -S /bin/ksh
94#-Q- default #!/bin/ksh
95#-Q- default ##################
96#-Q- default ## DEFAULT HOST ##
97#-Q- default ##################
98
99# $Date: $
100# $Author: $
101# $Revision: $
102# IPSL (2006)
103#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
104
105#set -eu
106#set -vx
107
108date
109
110#-Q- sx8brodie export OMP_NUM_THREADS=1
111#-Q- aix6 export OMP_NUM_THREADS=1
112
113########################################################################
114
115#D- Flag to determine if this job in a standalone mode
116#D- Default : value from AA_job if any
117StandAlone=${StandAlone:=true}
118
119#D- Low level debug : to bypass lib test checks and stack construction
120#D- Default : value from AA_job if any
121libIGCM=${libIGCM:=::modipsl::/libIGCM}
122# WARNING for StandAlone used : To run this script on some machine,
123# you must check MirrorlibIGCM variable in sys library.
124# If this variable is true, you must use libIGCM_POST path instead
125# of your running libIGCM directory.
126
127#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
128MASTER=${MASTER:=mercure-old|titane|brodie|vargas}
129
130#D- Do we rebuild parallel output from archive or from ${BIGDIR}
131#D- Default : value from AA_job if any
132RebuildFromArchive=${RebuildFromArchive:=false}
133
134#D- Directory where files we need to rebuild are store
135#D- Default : value from AA_job if any
136#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
137#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
138#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
139#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
140REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
141
142#D- How many directory to rebuild we have to consider
143#D- Default : value from AA_job if any
144NbRebuildDir=${NbRebuildDir:=1000}
145
146#D- Suffix date we will use to determine which directory to rebuild
147#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
148#D- Default : value from AA_job if any
149LastPeriodForRebuild=${PeriodDateBegin:=18901201}
150
151#D- Name of the job to work in a standalone mode (needed for mask patch)
152#D- Default : value from config.card if any
153config_UserChoices_JobName=${config_UserChoices_JobName:=name_of_the_job}
154
155#D- Directory where output data are stored (needed in standalone mode for mask patch)
156#D- Default : value from AA_job if any
157R_SAVE=${R_SAVE:=/path/to/your/ARCHIVE/FILES}
158
159#D- Flag to determine atlas job's output directory
160#D- Default : value from libIGCM_post.ksh if any
161POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
162
163#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
164libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
165
166#D- Increased verbosity (1, 2, 3)
167#D- Default : value from AA_job if any
168Verbosity=${Verbosity:=3}
169
170#D- Low level debug : to bypass lib test checks and stack construction
171#D- Default : value from AA_job if any
172DEBUG_debug=${DEBUG_debug:=false}
173
174#D- TEMPORARY Flag to determine atmospheric resolution
175#D- Default : value from atmospheric driver if any
176RESOL_ATM=${RESOL_ATM:=ALL}
177
178#D- TEMPORARY Flag to determine ocean resolution
179#D- Default : value from ocean driver if any
180RESOL_OCE=${RESOL_OCE:=ORCA2}
181
182#D- TEMPORARY Flag to determine ice resolution
183#D- Default : value from ice driver if any
184RESOL_ICE=${RESOL_ICE:=ORCA2}
185
186#D- TEMPORARY Flag to determine biogeochemistry resolution
187#D- Default : value from ice driver if any
188RESOL_MBG=${RESOL_MBG:=ORCA2}
189
190#D- Flag to determine surface resolution
191#D- Default : value from surface driver if any
192RESOL_SRF=ALL
193
194#D- Flag to determine surface resolution
195#D- Default : value from surface driver if any
196RESOL_SBG=ALL
197
198########################################################################
199
200. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
201      ( ${DEBUG_debug} ) && IGCM_debug_Check
202. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
203     ( ${DEBUG_debug} ) && IGCM_card_Check
204. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
205     ( ${DEBUG_debug} ) && IGCM_date_Check
206#-------
207. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
208. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
209
210########################################################################
211
212#set -vx
213
214RUN_DIR=${RUN_DIR_PATH}
215IGCM_sys_MkdirWork ${RUN_DIR}
216IGCM_sys_Cd ${RUN_DIR}
217#
218if [ ${RebuildFromArchive} = true ] ; then
219    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
220else
221    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
222fi
223#
224
225for directory in ${ListAllRebuildDir} ; do
226    #
227    if [ ${RebuildFromArchive} = true ] ; then
228        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
229    else
230        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
231    fi
232    #
233    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
234
235    # --------------------------------------------------------------------
236    # Source function include in the REBUILD ksh and rebuild
237    # --------------------------------------------------------------------
238    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
239    IGCM_FlushRebuild
240    #
241    IGCM_sys_Cd ${RUN_DIR}
242    # Clean Up
243    # local clean up
244    IGCM_sys_Rm -rf $( basename ${directory} )
245    # remote clean up
246    if [ ${RebuildFromArchive} = true ] ; then
247        IGCM_sys_RshArchive rm -rf ${directory}
248    else
249        IGCM_sys_RshMaster rm -rf ${directory}
250    fi
251done
252
253# Clean RUN_DIR_PATH (necessary for cesium only)
254IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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