source: tags/libIGCM_v2.0/AA_atlas_ORCA_LIM

#-Q- curie ######################
#-Q- curie ## CURIE   TGCC/CEA ##
#-Q- curie ######################
#-Q- curie #MSUB -r ATL_OPA        # Nom du job
#-Q- curie #MSUB -eo
#-Q- curie #MSUB -n 1              # Reservation du processus
#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- curie #MSUB -q xlarge
#-Q- curie #MSUB -Q normal
#-Q- curie #MSUB -A ::default_project::
#-Q- curie set +x
#-Q- ada #!/bin/ksh
#-Q- ada #######################
#-Q- ada ##   ADA   IDRIS  ##
#-Q- ada #######################
#-Q- ada # @ job_type = serial
#-Q- ada # @ requirements = (Feature == "prepost")
#-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- ada # @ wall_clock_limit = 2:00:00
#-Q- ada # Nom du travail LoadLeveler
#-Q- ada # @ job_name   = ATL_OPA
#-Q- ada # Fichier de sortie standard du travail
#-Q- ada # @ output     = $(job_name).$(jobid)
#-Q- ada # Fichier de sortie d'erreur du travail
#-Q- ada # @ error      =  $(job_name).$(jobid)
#-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- ada # @ notification = error
#-Q- ada # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
#-Q- ada # @ queue
#-Q- sx9mercure #!/bin/ksh
#-Q- sx9mercure ######################
#-Q- sx9mercure ## SX9MERCURE  CCRT ##
#-Q- sx9mercure ######################
#-Q- sx9mercure #PBS -N  ATL_OPA             # Nom du job
#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
#-Q- sx9mercure #PBS -l elapstim_req=2:00:00   # Limite temps a 2 heures
#-Q- sx9mercure #PBS -q scalaire
#-Q- sx9mercure #PBS -r n
#-Q- titane #!/bin/ksh
#-Q- titane ######################
#-Q- titane ## TITANE   CEA ##
#-Q- titane ######################
#-Q- titane #MSUB -r ATL_OPA        # Nom du job
#-Q- titane #MSUB -eo
#-Q- titane #MSUB -n 1              # Reservation du processus
#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- titane #MSUB -q mono
#-Q- titane #MSUB -E '-rn'
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################

#**************************************************************
# Author: Sebastien Denvil
# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
# $Revision::                                          $ Revision of last commit
# $Author::                                            $ Author of last commit
# $Date::                                              $ Date of last commit
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
#
#**************************************************************

#set -eu
#set -vx 

date

#-Q- ada export OMP_NUM_THREADS=1

#D- Task type (computing or post-processing)
TaskType=post-processing

########################################################################

. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
#-------
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
#-------
( ${DEBUG_debug} ) && IGCM_debug_Check
( ${DEBUG_debug} ) && IGCM_card_Check
( ${DEBUG_debug} ) && IGCM_date_Check

########################################################################

#set -vx 

IGCM_sys_MkdirWork ${RUN_DIR_PATH}
IGCM_sys_Cd ${RUN_DIR_PATH}

# ------------------------------------------------------------------
# Test if all was right before proceeding further
# ------------------------------------------------------------------
IGCM_debug_Verif_Exit_Post

if [ ${StandAlone} = true ] ; then
    CARD_DIR=${SUBMIT_DIR}
else
    CARD_DIR=${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}

fi

#==================================
# First of all
#
# Read libIGCM compatibility version in config.card
# Read UserChoices section
# Read Ensemble section
# Read Post section
# Define all netcdf output directories
#==================================
IGCM_config_CommonConfiguration ${CARD_DIR}/config.card

#
IGCM_sys_MkdirArchive ${R_FIGR}

R_ATLAS=ATLAS/SE_${YEARS}
R_OUT_OCE=${R_SAVE}/OCE
R_OUT_ICE=${R_SAVE}/ICE
DIR_OUT=${DIR_OUT:=SE}

RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
IGCM_sys_MkdirWork ${RUN_DIR}
IGCM_sys_Cd ${RUN_DIR}

# --------------------------------------------
# Insert your commands between III...III lines
# and precise produced directories to save
# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}

atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
#atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# Put ferret journal files together
for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do
  echo -e "\n\n################################" ; 
  echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/OCE_T/allferretscript.txt

for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do  
  echo -e "\n\n################################" ; 
  echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/OCE_U/allferretscript.txt

for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do  
  echo -e "\n\n################################" ; 
  echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/OCE_V/allferretscript.txt

for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do  
  echo -e "\n\n################################" ; 
  echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/OCE/allferretscript.txt

for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do  
  echo -e "\n\n################################" ; 
  echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/ICE/allferretscript.txt

# WHILE WAITING FOR A MORE GENERIC SOLUTION
if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
  IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
  atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
  for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
    echo -e "\n\n################################" ;
    echo -e "$file\n" ; cat $file ;
  done > ${R_ATLAS}/ZNL/allferretscript.txt
fi

# Clear some files
find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;

# Save files
IGCM_sys_Put_Dir ATLAS ${R_FIGR}

IGCM_sys_Rm -Rf ATLAS
IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc 
IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
# WHILE WAITING FOR A MORE GENERIC SOLUTION
if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
  IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ; 
fi

# DODS copy
IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}

# Clean RUN_DIR_PATH (necessary for cesium and titane only)
IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}