source: tags/libIGCM_v2.0_beta1/AA_atlas_ORCA_LIM @ 1579

Last change on this file since 1579 was 647, checked in by aclsce, 12 years ago

Modified CARD_DIR variable to take into account modifications about the use of Get_Master function to get files (instead of directory).
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 13.8 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_OPA        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_OPA        # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- platine #!/usr/bin/ksh
20#-Q- platine ##################
21#-Q- platine ## PLATINE   CEA ##
22#-Q- platine ##################
23#-Q- platine #BSUB -J ATL_OPA           # Nom du job
24#-Q- platine #BSUB -N                   # message a la fin du job
25#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
26#-Q- platine #BSUB -W 1:00              # Limite temps
27#-Q- platine #BSUB -q post              # Passage en queue post
28#-Q- platine #BSUB -L /bin/ksh
29#-Q- sx8brodie #!/bin/ksh
30#-Q- sx8brodie #######################
31#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
32#-Q- sx8brodie #######################
33#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
34#-Q- sx8brodie # @ wall_clock_limit = 2:00:00
35#-Q- sx8brodie # Nom du travail LoadLeveler
36#-Q- sx8brodie # @ job_name   = ATL_OPA
37#-Q- sx8brodie # Fichier de sortie standard du travail       
38#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
39#-Q- sx8brodie # Fichier de sortie d'erreur du travail
40#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
41#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
42#-Q- sx8brodie # @ notification = error
43#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
44#-Q- sx8brodie # @ queue
45#-Q- aix6 #!/bin/ksh
46#-Q- aix6 #######################
47#-Q- aix6 ##   VARGAS   IDRIS  ##
48#-Q- aix6 #######################
49#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
50#-Q- aix6 # @ wall_clock_limit = 2:00:00
51#-Q- aix6 # Nom du travail LoadLeveler
52#-Q- aix6 # @ job_name   = ATL_OPA
53#-Q- aix6 # Fichier de sortie standard du travail       
54#-Q- aix6 # @ output     = $(job_name).$(jobid)
55#-Q- aix6 # Fichier de sortie d'erreur du travail
56#-Q- aix6 # @ error      =  $(job_name).$(jobid)
57#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
58#-Q- aix6 # @ notification = error
59#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
60#-Q- aix6 # @ queue
61#-Q- ulam #!/bin/ksh
62#-Q- ulam #######################
63#-Q- ulam ##   ULAM   IDRIS  ##
64#-Q- ulam #######################
65#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
66#-Q- ulam # @ wall_clock_limit = 2:00:00
67#-Q- ulam # Nom du travail LoadLeveler
68#-Q- ulam # @ job_name   = ATL_OPA
69#-Q- ulam # Fichier de sortie standard du travail       
70#-Q- ulam # @ output     = $(job_name).$(jobid)
71#-Q- ulam # Fichier de sortie d'erreur du travail
72#-Q- ulam # @ error      =  $(job_name).$(jobid)
73#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
74#-Q- ulam # @ notification = error
75#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
76#-Q- ulam # @ queue
77#-Q- sx8mercure #!/bin/ksh
78#-Q- sx8mercure ######################
79#-Q- sx8mercure ## SX8MERCURE   CEA ##
80#-Q- sx8mercure ######################
81#-Q- sx8mercure #PBS -N  ATL_OPA             # Nom du job
82#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
83#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
84#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
85#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
86#-Q- sx8mercure #PBS -q scalaire
87#-Q- sx8mercure #PBS -r n
88#-Q- sx9mercure #!/bin/ksh
89#-Q- sx9mercure ######################
90#-Q- sx9mercure ## SX9MERCURE  CCRT ##
91#-Q- sx9mercure ######################
92#-Q- sx9mercure #PBS -N  ATL_OPA             # Nom du job
93#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
94#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
95#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
96#-Q- sx9mercure #PBS -l elapstim_req=2:00:00   # Limite temps a 2 heures
97#-Q- sx9mercure #PBS -q scalaire
98#-Q- sx9mercure #PBS -r n
99#-Q- titane #!/bin/ksh
100#-Q- titane ######################
101#-Q- titane ## TITANE   CEA ##
102#-Q- titane ######################
103#-Q- titane #MSUB -r ATL_OPA        # Nom du job               
104#-Q- titane #MSUB -eo
105#-Q- titane #MSUB -n 1              # Reservation du processus
106#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
107#-Q- titane #MSUB -q mono
108#-Q- titane #MSUB -E '-rn'
109#-Q- default #!/bin/ksh
110#-Q- default ##################
111#-Q- default ## DEFAULT HOST ##
112#-Q- default ##################
113
114#**************************************************************
115# Author: Sebastien Denvil
116# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
117# $Revision::                                          $ Revision of last commit
118# $Author::                                            $ Author of last commit
119# $Date::                                              $ Date of last commit
120# IPSL (2006)
121#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
122#
123#**************************************************************
124
125#set -eu
126#set -vx
127
128date
129
130#-Q- sx8brodie export OMP_NUM_THREADS=1
131#-Q- aix6 export OMP_NUM_THREADS=1
132#-Q- ulam export OMP_NUM_THREADS=1
133
134########################################################################
135
136. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
137      ( ${DEBUG_debug} ) && IGCM_debug_Check
138. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
139     ( ${DEBUG_debug} ) && IGCM_card_Check
140. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
141     ( ${DEBUG_debug} ) && IGCM_date_Check
142#-------
143. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
144
145########################################################################
146
147#set -vx
148
149IGCM_sys_MkdirWork ${RUN_DIR_PATH}
150IGCM_sys_Cd ${RUN_DIR_PATH}
151
152# ------------------------------------------------------------------
153# Test if all was right before proceeding further
154# ------------------------------------------------------------------
155IGCM_debug_Verif_Exit_Post
156
157if [ ${StandAlone} = true ] ; then
158    CARD_DIR=${SUBMIT_DIR}
159else
160    CARD_DIR=${RUN_DIR_PATH}
161    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
162    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
163    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
164    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
165
166fi
167#
168# First of all
169#
170IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
171typeset option
172for option in ${config_UserChoices[*]} ; do
173    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
174done
175#
176echo
177IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
178IGCM_debug_PrintVariables 3 config_UserChoices_JobName
179IGCM_debug_PrintVariables 3 config_UserChoices_LongName
180IGCM_debug_PrintVariables 3 config_UserChoices_TagName
181IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
182IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
183IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
184IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
185IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
186IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
187echo
188
189#==================================
190#R_SAVE : Job output directory
191#R_BUFR : Job output buffered directory
192if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
193    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
194    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
195    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
196    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
197    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
198else
199    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
200    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
201    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
202    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
203fi
204#
205IGCM_sys_MkdirArchive ${R_FIGR}
206
207R_ATLAS=ATLAS/SE_${YEARS}
208R_OUT_OCE=${R_SAVE}/OCE
209R_OUT_ICE=${R_SAVE}/ICE
210DIR_OUT=${DIR_OUT:=SE}
211
212RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
213IGCM_sys_MkdirWork ${RUN_DIR}
214IGCM_sys_Cd ${RUN_DIR}
215
216# --------------------------------------------
217# Insert your commands between III...III lines
218# and precise produced directories to save
219# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
220
221IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
222IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
223IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
224IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
225IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
226
227atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
228atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
229atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
230#atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
231atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
232atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
233
234# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
235
236# Put ferret journal files together
237for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do 
238    echo -e "\n\n################################" ;
239    echo -e "$file\n" ; cat $file ;
240done  > ${R_ATLAS}/OCE_T/allferretscript.txt
241
242for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do 
243    echo -e "\n\n################################" ;
244    echo -e "$file\n" ; cat $file ;
245done  > ${R_ATLAS}/OCE_U/allferretscript.txt
246
247for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do 
248    echo -e "\n\n################################" ;
249    echo -e "$file\n" ; cat $file ;
250done  > ${R_ATLAS}/OCE_V/allferretscript.txt
251
252for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do 
253    echo -e "\n\n################################" ;
254    echo -e "$file\n" ; cat $file ;
255done  > ${R_ATLAS}/OCE/allferretscript.txt
256
257for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do 
258    echo -e "\n\n################################" ;
259    echo -e "$file\n" ; cat $file ;
260done  > ${R_ATLAS}/ICE/allferretscript.txt
261
262# WHILE WAITING FOR A MORE GENERIC SOLUTION
263if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
264    IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
265    atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
266    for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
267        echo -e "\n\n################################" ;
268        echo -e "$file\n" ; cat $file ;
269    done > ${R_ATLAS}/ZNL/allferretscript.txt
270fi
271
272# Clear some files
273find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
274
275# Save files
276IGCM_sys_Put_Dir ATLAS ${R_FIGR}
277
278IGCM_sys_Rm -Rf ATLAS
279IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
280IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc     
281# WHILE WAITING FOR A MORE GENERIC SOLUTION
282if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
283    IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
284fi
285
286# DODS copy
287IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
288[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
289
290# Clean RUN_DIR_PATH (necessary for cesium and titane only)
291IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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