source: tags/libIGCM_v2.0_beta1/AA_atlas_ORCHIDEE @ 1170

#-Q- cesium #!/bin/ksh
#-Q- cesium ######################
#-Q- cesium ## CESIUM   CEA ##
#-Q- cesium ######################
#-Q- cesium #MSUB -r ATL_ORCH       # Nom du job                
#-Q- cesium #MSUB -N 1              # Reservation du noeud
#-Q- cesium #MSUB -n 1              # Reservation du processus
#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- cesium #MSUB -E "-j o"
#-Q- cesium #MSUB -E "-S /bin/ksh"
#-Q- curie ######################
#-Q- curie ## CURIE   TGCC/CEA ##
#-Q- curie ######################
#-Q- curie #MSUB -r ATL_ORCH       # Nom du job               
#-Q- curie #MSUB -eo
#-Q- curie #MSUB -n 1              # Reservation du processus
#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- curie #MSUB -E '--no-requeue' 
#-Q- platine #!/usr/bin/ksh
#-Q- platine ##################
#-Q- platine ## PLATINE   CEA ##
#-Q- platine ##################
#-Q- platine #BSUB -J ATL_ORCH          # Nom du job
#-Q- platine #BSUB -N                   # message a la fin du job
#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
#-Q- platine #BSUB -W 1:00              # Limite temps
#-Q- platine #BSUB -q post              # Passage en queue post
#-Q- platine #BSUB -L /bin/ksh
#-Q- sx8brodie #!/bin/ksh
#-Q- sx8brodie #######################
#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
#-Q- sx8brodie #######################
#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
#-Q- sx8brodie # Nom du travail LoadLeveler
#-Q- sx8brodie # @ job_name   = ATL_ORCH
#-Q- sx8brodie # Fichier de sortie standard du travail       
#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
#-Q- sx8brodie # Fichier de sortie d'erreur du travail
#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- sx8brodie # @ notification = error
#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
#-Q- sx8brodie # @ queue
#-Q- aix6 #!/bin/ksh
#-Q- aix6 #######################
#-Q- aix6 ##   VARGAS   IDRIS  ##
#-Q- aix6 #######################
#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- aix6 # @ wall_clock_limit = 1:00:00
#-Q- aix6 # Nom du travail LoadLeveler
#-Q- aix6 # @ job_name   = ATL_ORCH
#-Q- aix6 # Fichier de sortie standard du travail       
#-Q- aix6 # @ output     = $(job_name).$(jobid)
#-Q- aix6 # Fichier de sortie d'erreur du travail
#-Q- aix6 # @ error      =  $(job_name).$(jobid)
#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- aix6 # @ notification = error
#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
#-Q- aix6 # @ queue
#-Q- ulam #!/bin/ksh
#-Q- ulam #######################
#-Q- ulam ##   ULAM   IDRIS  ##
#-Q- ulam #######################
#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- ulam # @ wall_clock_limit = 1:00:00
#-Q- ulam # Nom du travail LoadLeveler
#-Q- ulam # @ job_name   = ATL_ORCH
#-Q- ulam # Fichier de sortie standard du travail       
#-Q- ulam # @ output     = $(job_name).$(jobid)
#-Q- ulam # Fichier de sortie d'erreur du travail
#-Q- ulam # @ error      =  $(job_name).$(jobid)
#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- ulam # @ notification = error
#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
#-Q- ulam # @ queue
#-Q- sx8mercure #!/bin/ksh
#-Q- sx8mercure ######################
#-Q- sx8mercure ## SX8MERCURE   CEA ##
#-Q- sx8mercure ######################
#-Q- sx8mercure #PBS -N  ATL_ORCH            # Nom du job
#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
#-Q- sx8mercure #PBS -l cputim_job=1:00:00   # Limite temps a 2 heures
#-Q- sx8mercure #PBS -q scalaire
#-Q- sx8mercure #PBS -r n
#-Q- sx9mercure #!/bin/ksh
#-Q- sx9mercure ######################
#-Q- sx9mercure ## SX9MERCURE  CCRT ##
#-Q- sx9mercure ######################
#-Q- sx9mercure #PBS -N  ATL_ORCH            # Nom du job
#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
#-Q- sx9mercure #PBS -l elapstim_req=1:00:00   # Limite temps a 2 heures
#-Q- sx9mercure #PBS -q scalaire
#-Q- sx9mercure #PBS -r n
#-Q- titane #!/bin/ksh
#-Q- titane ######################
#-Q- titane ## TITANE   CEA ##
#-Q- titane ######################
#-Q- titane #MSUB -r ATL_ORCH       # Nom du job                
#-Q- titane #MSUB -eo
#-Q- titane #MSUB -n 1              # Reservation du processus
#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
#-Q- titane #MSUB -q mono
#-Q- titane #MSUB -E '-rn'
#-Q- lxiv8 ######################
#-Q- lxiv8 ## OBELIX      LSCE ##
#-Q- lxiv8 ######################
#-Q- lxiv8 #PBS -N ATL_ORCH
#-Q- lxiv8 #PBS -m a
#-Q- lxiv8 #PBS -j oe
#-Q- lxiv8 #PBS -q medium
#-Q- lxiv8 #PBS -o ATL_ORCH.$$
#-Q- lxiv8 #PBS -S /bin/ksh
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################

#**************************************************************
# Author: Martial Mancip
# Contact: Martial.Mancip__at__ipsl.jussieu.fr
# $Revision::                                          $ Revision of last commit
# $Author::                                            $ Author of last commit
# $Date::                                              $ Date of last commit
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
#
#**************************************************************

#set -eu
#set -vx

date

#-Q- sx8brodie export OMP_NUM_THREADS=1
#-Q- aix6 export OMP_NUM_THREADS=1
#-Q- ulam export OMP_NUM_THREADS=1

########################################################################

. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
      ( ${DEBUG_debug} ) && IGCM_debug_Check
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
     ( ${DEBUG_debug} ) && IGCM_card_Check
. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
     ( ${DEBUG_debug} ) && IGCM_date_Check
#-------
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh

########################################################################

#set -vx 

IGCM_sys_MkdirWork ${RUN_DIR_PATH}
IGCM_sys_Cd ${RUN_DIR_PATH}

# ------------------------------------------------------------------
# Test if all was right before proceeding further
# ------------------------------------------------------------------
IGCM_debug_Verif_Exit_Post

if [ ${StandAlone} = true ] ; then
    CARD_DIR=${SUBMIT_DIR}
else
    CARD_DIR=${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
fi
#
# First of all
#
IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
typeset option
for option in ${config_UserChoices[*]} ; do
    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
done
#
echo
IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
IGCM_debug_PrintVariables 3 config_UserChoices_JobName
IGCM_debug_PrintVariables 3 config_UserChoices_LongName
IGCM_debug_PrintVariables 3 config_UserChoices_TagName
IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
echo

#==================================
#R_SAVE : Job output directory
#R_BUFR : Job output buffered directory
if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
else
    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
fi
#
IGCM_sys_MkdirArchive ${R_FIGR}

R_ATLAS=ATLAS/SE_${YEARS}
R_OUT_SRF=${R_SAVE}/SRF
DIR_OUT=${DIR_OUT:=SE}

RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS}
IGCM_sys_MkdirWork ${RUN_DIR}
IGCM_sys_Cd ${RUN_DIR}

# --------------------------------------------
# Insert your commands between III...III lines 
# and precise produced directories to save
# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR}

atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \
                                       ${FER_ATLAS}/atlas_p_SECHIBA_diag1_*.cfg \
                                       ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# Put ferret journal files together
for file in $( ls ${R_ATLAS}/SRF/*/*jnl ) ; do  
    echo -e "\n\n################################" ; 
    echo -e "$file\n" ; cat $file ; 
done  > ${R_ATLAS}/SRF/allferretscript.txt

# Clear some files
find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;

# Save files
IGCM_sys_Put_Dir ATLAS ${R_FIGR}
IGCM_sys_Rm -Rf ATLAS
IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc

# DODS copy
IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}

# Clean RUN_DIR_PATH (necessary for cesium and titane only)
IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}