source: tags/libIGCM_v2.0_beta1/AA_rebuild_fromWorkdir @ 1456

Last change on this file since 1456 was 643, checked in by mafoipsl, 12 years ago

Add norerun options for jobs on titane and curie.
  • Property svn:keywords set to Revision Author Date
File size: 11.5 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDWRK     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r REBUILDWRK     # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- platine #!/usr/bin/ksh
20#-Q- platine ###################
21#-Q- platine ## PLATINE   CEA ##
22#-Q- platine ###################
23#-Q- platine #BSUB -J REBUILDWRK             # Nom du job
24#-Q- platine #BSUB -N                        # message a la fin du job
25#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
26#-Q- platine #BSUB -W 4:00                   # Limite temps
27#-Q- platine #BSUB -q post                   # Passage en queue post
28#-Q- platine #BSUB -L /bin/ksh
29#-Q- sx8brodie #!/bin/ksh
30#-Q- sx8brodie #######################
31#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
32#-Q- sx8brodie #######################
33#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
34#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
35#-Q- sx8brodie # Nom du travail LoadLeveler
36#-Q- sx8brodie # @ job_name   = REBUILDWRK
37#-Q- sx8brodie # Fichier de sortie standard du travail       
38#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
39#-Q- sx8brodie # Fichier de sortie d'erreur du travail
40#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
41#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
42#-Q- sx8brodie # @ notification = error
43#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
44#-Q- sx8brodie # @ queue
45#-Q- aix6 #!/bin/ksh
46#-Q- aix6 #######################
47#-Q- aix6 ##   VARGAS   IDRIS  ##
48#-Q- aix6 #######################
49#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
50#-Q- aix6 # @ wall_clock_limit = 10:00:00
51#-Q- aix6 # Nom du travail LoadLeveler
52#-Q- aix6 # @ job_name   = REBUILDWRK
53#-Q- aix6 # Fichier de sortie standard du travail
54#-Q- aix6 # @ output     = $(job_name).$(jobid)
55#-Q- aix6 # Fichier de sortie d'erreur du travail
56#-Q- aix6 # @ error      =  $(job_name).$(jobid)
57#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
58#-Q- aix6 # @ notification = error
59#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
60#-Q- aix6 # @ queue
61#-Q- ulam #!/bin/ksh
62#-Q- ulam #######################
63#-Q- ulam ##   VARGAS   IDRIS  ##
64#-Q- ulam #######################
65#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
66#-Q- ulam # @ wall_clock_limit = 10:00:00
67#-Q- ulam # Nom du travail LoadLeveler
68#-Q- ulam # @ job_name   = REBUILDWRK
69#-Q- ulam # Fichier de sortie standard du travail
70#-Q- ulam # @ output     = $(job_name).$(jobid)
71#-Q- ulam # Fichier de sortie d'erreur du travail
72#-Q- ulam # @ error      =  $(job_name).$(jobid)
73#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
74#-Q- ulam # @ notification = error
75#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
76#-Q- ulam # @ queue
77#-Q- sx8mercure #!/bin/ksh
78#-Q- sx8mercure ######################
79#-Q- sx8mercure ## SX8MERCURE   CEA ##
80#-Q- sx8mercure ######################
81#-Q- sx8mercure #PBS -N REBUILDWRK           # Nom du job
82#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
83#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
84#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
85#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
86#-Q- sx8mercure #PBS -q scalaire
87#-Q- sx8mercure #PBS -r n
88#-Q- sx9mercure #!/bin/ksh
89#-Q- sx9mercure ######################
90#-Q- sx9mercure ## SX9MERCURE  CCRT ##
91#-Q- sx9mercure ######################
92#-Q- sx9mercure #PBS -N REBUILDWRK           # Nom du job
93#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
94#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
95#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
96#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
97#-Q- sx9mercure #PBS -q scalaire
98#-Q- sx9mercure #PBS -r n
99#-Q- titane #!/bin/ksh
100#-Q- titane ######################
101#-Q- titane ## TITANE   CEA     ##
102#-Q- titane ######################
103#-Q- titane #MSUB -r REBUILDWRK     # Nom du job               
104#-Q- titane #MSUB -eo
105#-Q- titane #MSUB -n 1              # Reservation du processus
106#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
107#-Q- titane #MSUB -q mono
108#-Q- titane #MSUB -E '-rn'
109#-Q- lxiv8 ######################
110#-Q- lxiv8 ## OBELIX      LSCE ##
111#-Q- lxiv8 ######################
112#-Q- lxiv8 #PBS -N REBUILDWRK
113#-Q- lxiv8 #PBS -m a
114#-Q- lxiv8 #PBS -j oe
115#-Q- lxiv8 #PBS -q medium
116#-Q- lxiv8 #PBS -o REBUILDWRK.$$
117#-Q- lxiv8 #PBS -S /bin/ksh
118#-Q- default #!/bin/ksh
119#-Q- default ##################
120#-Q- default ## DEFAULT HOST ##
121#-Q- default ##################
122
123#**************************************************************
124# Author: Sebastien Denvil
125# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
126# $Revision::                                          $ Revision of last commit
127# $Author::                                            $ Author of last commit
128# $Date::                                              $ Date of last commit
129# IPSL (2006)
130#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
131#
132#**************************************************************
133
134#set -eu
135#set -vx
136
137date
138
139#-Q- sx8brodie export OMP_NUM_THREADS=1
140#-Q- aix6 export OMP_NUM_THREADS=1
141#-Q- ulam export OMP_NUM_THREADS=1
142
143########################################################################
144
145#D- Flag to determine if this job in a standalone mode
146#D- Default : value from AA_job if any
147StandAlone=${StandAlone:=true}
148
149#D- Path to libIGCM
150#D- Default : value from AA_job if any
151# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
152# WARNING you must check MirrorlibIGCM variable in sys library.
153# WARNING If this variable is true, you must use libIGCM_POST path instead
154# WARNING of your running libIGCM directory.
155libIGCM=${libIGCM:=::modipsl::/libIGCM}
156
157#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
158MASTER=${MASTER:=mercure|titane|brodie|vargas}
159
160#D- Do we rebuild parallel output from archive or from ${BIGDIR}
161#D- Default : value from AA_job if any
162RebuildFromArchive=${RebuildFromArchive:=false}
163
164#D- Directory where files we need to rebuild are store
165#D- Default : value from AA_job if any
166#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
167#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
168#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
169#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
170REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
171
172#D- How many directory to rebuild we have to consider
173#D- Default : value from AA_job if any
174NbRebuildDir=${NbRebuildDir:=1000}
175
176#D- Suffix date we will use to determine which directory to rebuild
177#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
178#D- Default : value from AA_job if any
179LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
180
181#D- Flag to determine atlas job's output directory
182#D- Default : value from libIGCM_post.ksh if any
183POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
184
185#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
186libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
187
188#D- Increased verbosity (1, 2, 3)
189#D- Default : value from AA_job if any
190Verbosity=${Verbosity:=3}
191
192#D- Low level debug : to bypass lib test checks and stack construction
193#D- Default : value from AA_job if any
194DEBUG_debug=${DEBUG_debug:=false}
195
196#D- TEMPORARY Flag to determine atmospheric resolution
197#D- Default : value from atmospheric driver if any
198RESOL_ATM=${RESOL_ATM:=ALL}
199
200#D- TEMPORARY Flag to determine ocean resolution
201#D- Default : value from ocean driver if any
202RESOL_OCE=${RESOL_OCE:=ORCA2}
203
204#D- TEMPORARY Flag to determine ice resolution
205#D- Default : value from ice driver if any
206RESOL_ICE=${RESOL_ICE:=ORCA2}
207
208#D- TEMPORARY Flag to determine biogeochemistry resolution
209#D- Default : value from ice driver if any
210RESOL_MBG=${RESOL_MBG:=ORCA2}
211
212#D- Flag to determine surface resolution
213#D- Default : value from surface driver if any
214RESOL_SRF=ALL
215
216#D- Flag to determine surface resolution
217#D- Default : value from surface driver if any
218RESOL_SBG=ALL
219
220########################################################################
221
222. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
223      ( ${DEBUG_debug} ) && IGCM_debug_Check
224. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
225     ( ${DEBUG_debug} ) && IGCM_card_Check
226. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
227     ( ${DEBUG_debug} ) && IGCM_date_Check
228#-------
229. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
230. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
231
232########################################################################
233
234#set -vx
235
236RUN_DIR=${RUN_DIR_PATH}
237IGCM_sys_MkdirWork ${RUN_DIR}
238IGCM_sys_Cd ${RUN_DIR}
239
240# ------------------------------------------------------------------
241# Test if all was right before proceeding further
242# ------------------------------------------------------------------
243IGCM_debug_Verif_Exit_Post
244
245#
246if [ ${RebuildFromArchive} = true ] ; then
247    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
248else
249    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
250fi
251#
252
253for directory in ${ListAllRebuildDir} ; do
254    #
255    if [ ${RebuildFromArchive} = true ] ; then
256        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
257    else
258        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
259    fi
260    #
261    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
262
263    # --------------------------------------------------------------------
264    # Source function include in the REBUILD ksh and rebuild
265    # --------------------------------------------------------------------
266    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
267    IGCM_FlushRebuild
268    #
269    IGCM_sys_Cd ${RUN_DIR}
270    # Clean Up
271    # local clean up
272    IGCM_sys_Rm -rf $( basename ${directory} )
273    # remote clean up
274    if [ ${RebuildFromArchive} = true ] ; then
275        IGCM_sys_RshArchive rm -rf ${directory}
276    else
277        IGCM_sys_RshMaster rm -rf ${directory}
278    fi
279done
280
281# Clean RUN_DIR_PATH (necessary for cesium and titane only)
282IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
283
284date
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