source: tags/libIGCM_v2.0_beta2/AA_atlas_PISCES @ 1170

Last change on this file since 1170 was 658, checked in by labetoulle, 12 years ago

Add Ensemble functionality to libIGCM - First step :
modify output directories according to an option in section [Ensemble]
in config.card (modification of config.card yet to be done).
  • Property svn:keywords set to Revision Author Date
File size: 13.0 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_PIS        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_PIS        # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- platine #!/usr/bin/ksh
20#-Q- platine ##################
21#-Q- platine ## PLATINE   CEA ##
22#-Q- platine ##################
23#-Q- platine #BSUB -J ATL_PIS           # Nom du job
24#-Q- platine #BSUB -N                   # message a la fin du job
25#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
26#-Q- platine #BSUB -W 1:00              # Limite temps
27#-Q- platine #BSUB -q post              # Passage en queue post
28#-Q- platine #BSUB -L /bin/ksh
29#-Q- sx8brodie #!/bin/ksh
30#-Q- sx8brodie #######################
31#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
32#-Q- sx8brodie #######################
33#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
34#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
35#-Q- sx8brodie # Nom du travail LoadLeveler
36#-Q- sx8brodie # @ job_name   = ATL_PIS
37#-Q- sx8brodie # Fichier de sortie standard du travail       
38#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
39#-Q- sx8brodie # Fichier de sortie d'erreur du travail
40#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
41#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
42#-Q- sx8brodie # @ notification = error
43#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
44#-Q- sx8brodie # @ queue
45#-Q- aix6 #!/bin/ksh
46#-Q- aix6 #######################
47#-Q- aix6 ##   VARGAS   IDRIS  ##
48#-Q- aix6 #######################
49#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
50#-Q- aix6 # @ wall_clock_limit = 1:00:00
51#-Q- aix6 # Nom du travail LoadLeveler
52#-Q- aix6 # @ job_name   = ATL_PIS
53#-Q- aix6 # Fichier de sortie standard du travail       
54#-Q- aix6 # @ output     = $(job_name).$(jobid)
55#-Q- aix6 # Fichier de sortie d'erreur du travail
56#-Q- aix6 # @ error      =  $(job_name).$(jobid)
57#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
58#-Q- aix6 # @ notification = error
59#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
60#-Q- aix6 # @ queue
61#-Q- ulam #!/bin/ksh
62#-Q- ulam #######################
63#-Q- ulam ##   ULAM   IDRIS  ##
64#-Q- ulam #######################
65#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
66#-Q- ulam # @ wall_clock_limit = 1:00:00
67#-Q- ulam # Nom du travail LoadLeveler
68#-Q- ulam # @ job_name   = ATL_PIS
69#-Q- ulam # Fichier de sortie standard du travail       
70#-Q- ulam # @ output     = $(job_name).$(jobid)
71#-Q- ulam # Fichier de sortie d'erreur du travail
72#-Q- ulam # @ error      =  $(job_name).$(jobid)
73#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
74#-Q- ulam # @ notification = error
75#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
76#-Q- ulam # @ queue
77#-Q- sx8mercure #!/bin/ksh
78#-Q- sx8mercure ######################
79#-Q- sx8mercure ## SX8MERCURE   CEA ##
80#-Q- sx8mercure ######################
81#-Q- sx8mercure #PBS -N  ATL_PIS             # Nom du job
82#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
83#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
84#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
85#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
86#-Q- sx8mercure #PBS -q scalaire
87#-Q- sx8mercure #PBS -r n
88#-Q- sx9mercure #!/bin/ksh
89#-Q- sx9mercure ######################
90#-Q- sx9mercure ## SX9MERCURE  CCRT ##
91#-Q- sx9mercure ######################
92#-Q- sx9mercure #PBS -N  ATL_PIS             # Nom du job
93#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
94#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
95#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
96#-Q- sx9mercure #PBS -l elapstim_req=2:00:00   # Limite temps a 2 heures
97#-Q- sx9mercure #PBS -q scalaire
98#-Q- sx9mercure #PBS -r n
99#-Q- titane #!/bin/ksh
100#-Q- titane ######################
101#-Q- titane ## TITANE   CEA ##
102#-Q- titane ######################
103#-Q- titane #MSUB -r ATL_PIS        # Nom du job
104#-Q- titane #MSUB -eo
105#-Q- titane #MSUB -n 1              # Reservation du processus
106#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
107#-Q- titane #MSUB -q mono
108#-Q- titane #MSUB -E '-rn'
109#-Q- default #!/bin/ksh
110#-Q- default ##################
111#-Q- default ## DEFAULT HOST ##
112#-Q- default ##################
113
114#**************************************************************
115# Author: Christian Ethe
116# Contact: Christian.Ethe__at__ipsl.jussieu.fr
117# $Revision::                                          $ Revision of last commit
118# $Author::                                            $ Author of last commit
119# $Date::                                              $ Date of last commit
120# IPSL (2006)
121#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
122#
123#**************************************************************
124
125#set -eu
126#set -vx
127
128date
129
130#-Q- sx8brodie export OMP_NUM_THREADS=1
131#-Q- aix6 export OMP_NUM_THREADS=1
132#-Q- ulam export OMP_NUM_THREADS=1
133
134########################################################################
135
136. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
137      ( ${DEBUG_debug} ) && IGCM_debug_Check
138. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
139     ( ${DEBUG_debug} ) && IGCM_card_Check
140. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
141     ( ${DEBUG_debug} ) && IGCM_date_Check
142#-------
143. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
144
145########################################################################
146
147#set -vx
148
149IGCM_sys_MkdirWork ${RUN_DIR_PATH}
150IGCM_sys_Cd ${RUN_DIR_PATH}
151
152# ------------------------------------------------------------------
153# Test if all was right before proceeding further
154# ------------------------------------------------------------------
155IGCM_debug_Verif_Exit_Post
156
157if [ ${StandAlone} = true ] ; then
158    CARD_DIR=${SUBMIT_DIR}
159else
160    CARD_DIR=${RUN_DIR_PATH}
161    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
162    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
163    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
164    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
165fi
166#
167# First of all
168#
169IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
170typeset option
171for option in ${config_UserChoices[*]} ; do
172    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
173done
174
175IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card Ensemble
176typeset option
177for option in ${config_Ensemble[*]} ; do
178    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option}
179done
180#
181echo
182IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
183IGCM_debug_PrintVariables 3 config_UserChoices_JobName
184IGCM_debug_PrintVariables 3 config_UserChoices_LongName
185IGCM_debug_PrintVariables 3 config_UserChoices_TagName
186IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
187IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
188IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
189IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
190IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
191IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
192IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleName
193IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleDate
194echo
195
196#==================================
197#R_SAVE : Job output directory
198#R_BUFR : Job output buffered directory
199if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
200  FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
201  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
202    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
203    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
204    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
205    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
206  else
207    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
208    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
209    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
210    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
211  fi
212else
213  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
214    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
215    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
216    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
217    R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
218  else
219    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
220    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
221    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
222    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
223  fi
224fi
225#
226IGCM_sys_MkdirArchive ${R_FIGR}
227
228R_ATLAS=ATLAS/SE_${YEARS}
229R_OUT_MBG=${R_SAVE}/MBG
230DIR_OUT=${DIR_OUT:=SE}
231
232RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS}
233IGCM_sys_MkdirWork ${RUN_DIR}
234IGCM_sys_Cd ${RUN_DIR}
235
236# --------------------------------------------
237# Insert your commands between III...III lines
238# and precise produced directories to save
239# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
240
241IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR}
242IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR}
243
244atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \
245                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
246atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg  \
247                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
248
249# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
250
251# Put ferret journal files together
252for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do
253    echo -e "\n\n################################" ;
254    echo -e "$file\n" ; cat $file ;
255done  > ${R_ATLAS}/MBG_T/allferretscript.txt
256
257for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do
258    echo -e "\n\n################################" ;
259    echo -e "$file\n" ; cat $file ;
260done  > ${R_ATLAS}/MBG_F/allferretscript.txt
261# Clear some files
262find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
263
264# Save files
265IGCM_sys_Put_Dir ATLAS ${R_FIGR}
266
267IGCM_sys_Rm -Rf ATLAS
268IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
269IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
270
271# DODS copy
272IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
273[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
274
275# Clean RUN_DIR_PATH (necessary for cesium and titane only)
276IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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