source: tags/libIGCM_v2.0_beta3/AA_atlas_LMDZ @ 1137

Last change on this file since 1137 was 681, checked in by mafoipsl, 12 years ago

On curie : Computing job on -q standard ie thin nodes, post-processing jobs on -q large ie large nodes. Stop default echo of commands.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.6 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_LMDZ       # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_LMDZ       # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- curie #MSUB -q large
20#-Q- curie set +x
21#-Q- platine #!/usr/bin/ksh
22#-Q- platine ##################
23#-Q- platine ## PLATINE   CEA ##
24#-Q- platine ##################
25#-Q- platine #BSUB -J ATL_LMDZ          # Nom du job
26#-Q- platine #BSUB -N                   # message a la fin du job
27#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
28#-Q- platine #BSUB -W 1:00              # Limite temps
29#-Q- platine #BSUB -q post              # Passage en queue post
30#-Q- platine #BSUB -L /bin/ksh
31#-Q- sx8brodie #!/bin/ksh
32#-Q- sx8brodie #######################
33#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
34#-Q- sx8brodie #######################
35#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
36#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
37#-Q- sx8brodie # Nom du travail LoadLeveler
38#-Q- sx8brodie # @ job_name   = ATL_LMDZ
39#-Q- sx8brodie # Fichier de sortie standard du travail       
40#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
41#-Q- sx8brodie # Fichier de sortie d'erreur du travail
42#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
43#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
44#-Q- sx8brodie # @ notification = error
45#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
46#-Q- sx8brodie # @ queue
47#-Q- aix6 #!/bin/ksh
48#-Q- aix6 #######################
49#-Q- aix6 ##   VARGAS   IDRIS  ##
50#-Q- aix6 #######################
51#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
52#-Q- aix6 # @ wall_clock_limit = 1:00:00
53#-Q- aix6 # Nom du travail LoadLeveler
54#-Q- aix6 # @ job_name   = ATL_LMDZ
55#-Q- aix6 # Fichier de sortie standard du travail       
56#-Q- aix6 # @ output     = $(job_name).$(jobid)
57#-Q- aix6 # Fichier de sortie d'erreur du travail
58#-Q- aix6 # @ error      =  $(job_name).$(jobid)
59#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
60#-Q- aix6 # @ notification = error
61#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
62#-Q- aix6 # @ queue
63#-Q- ulam #!/bin/ksh
64#-Q- ulam #######################
65#-Q- ulam ##   ULAM   IDRIS  ##
66#-Q- ulam #######################
67#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
68#-Q- ulam # @ wall_clock_limit = 1:00:00
69#-Q- ulam # Nom du travail LoadLeveler
70#-Q- ulam # @ job_name   = ATL_LMDZ
71#-Q- ulam # Fichier de sortie standard du travail       
72#-Q- ulam # @ output     = $(job_name).$(jobid)
73#-Q- ulam # Fichier de sortie d'erreur du travail
74#-Q- ulam # @ error      =  $(job_name).$(jobid)
75#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
76#-Q- ulam # @ notification = error
77#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
78#-Q- ulam # @ queue
79#-Q- sx8mercure #!/bin/ksh
80#-Q- sx8mercure ######################
81#-Q- sx8mercure ## SX8MERCURE   CEA ##
82#-Q- sx8mercure ######################
83#-Q- sx8mercure #PBS -N  ATL_LMDZ           # Nom du job
84#-Q- sx8mercure #PBS -j o                   # regroupement des stdout et stderr
85#-Q- sx8mercure #PBS -S /usr/bin/ksh        # shell de soumission
86#-Q- sx8mercure #PBS -l memsz_job=1gb       # Limite memoire a 1 Go
87#-Q- sx8mercure #PBS -l cputim_job=2:00:00  # Limite temps a 2 heures
88#-Q- sx8mercure #PBS -q scalaire
89#-Q- sx8mercure #PBS -r n
90#-Q- sx9mercure #!/bin/ksh
91#-Q- sx9mercure ######################
92#-Q- sx9mercure ## SX9MERCURE  CCRT ##
93#-Q- sx9mercure ######################
94#-Q- sx9mercure #PBS -N  ATL_LMDZ           # Nom du job
95#-Q- sx9mercure #PBS -j o                   # regroupement des stdout et stderr
96#-Q- sx9mercure #PBS -S /usr/bin/ksh        # shell de soumission
97#-Q- sx9mercure #PBS -l memsz_job=1gb       # Limite memoire a 1 Go
98#-Q- sx9mercure #PBS -l elapstim_req=2:00:00  # Limite temps a 2 heures
99#-Q- sx9mercure #PBS -q scalaire
100#-Q- sx9mercure #PBS -r n
101#-Q- titane #!/bin/ksh
102#-Q- titane ######################
103#-Q- titane ## TITANE   CEA ##
104#-Q- titane ######################
105#-Q- titane #MSUB -r ATL_LMDZ       # Nom du job               
106#-Q- titane #MSUB -eo
107#-Q- titane #MSUB -n 1              # Reservation du processus
108#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
109#-Q- titane #MSUB -q mono
110#-Q- titane #MSUB -E '-rn'
111#-Q- default #!/bin/ksh
112#-Q- default ##################
113#-Q- default ## DEFAULT HOST ##
114#-Q- default ##################
115
116#**************************************************************
117# Author: Sebastien Denvil
118# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
119# $Revision::                                          $ Revision of last commit
120# $Author::                                            $ Author of last commit
121# $Date::                                              $ Date of last commit
122# IPSL (2006)
123#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
124#
125#**************************************************************
126
127#set -eu
128#set -vx
129
130date
131
132#-Q- sx8brodie export OMP_NUM_THREADS=1
133#-Q- aix6 export OMP_NUM_THREADS=1
134#-Q- ulam export OMP_NUM_THREADS=1
135
136######################################################################
137
138. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
139      ( ${DEBUG_debug} ) && IGCM_debug_Check
140. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
141     ( ${DEBUG_debug} ) && IGCM_card_Check
142. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
143     ( ${DEBUG_debug} ) && IGCM_date_Check
144#-------
145. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
146
147######################################################################
148
149#set -vx
150
151IGCM_sys_MkdirWork ${RUN_DIR_PATH}
152IGCM_sys_Cd ${RUN_DIR_PATH}
153
154# ------------------------------------------------------------------
155# Test if all was right before proceeding further
156# ------------------------------------------------------------------
157IGCM_debug_Verif_Exit_Post
158
159if [ ${StandAlone} = true ] ; then
160    CARD_DIR=${SUBMIT_DIR}
161else
162    CARD_DIR=${RUN_DIR_PATH}
163    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
164    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
165    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
166    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
167fi
168#
169# First of all
170#
171IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
172typeset option
173for option in ${config_UserChoices[*]} ; do
174    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
175done
176
177IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card Ensemble
178typeset option
179for option in ${config_Ensemble[*]} ; do
180    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option}
181done
182#
183echo
184IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
185IGCM_debug_PrintVariables 3 config_UserChoices_JobName
186IGCM_debug_PrintVariables 3 config_UserChoices_LongName
187IGCM_debug_PrintVariables 3 config_UserChoices_TagName
188IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
189IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
190IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
191IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
192IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
193IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
194IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleName
195IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleDate
196echo
197
198#==================================
199#R_SAVE : Job output directory
200#R_BUFR : Job output buffered directory
201if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
202  FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
203  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
204    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
205    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
206    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
207    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
208  else
209    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
210    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
211    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
212    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
213  fi
214else
215  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
216    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
217    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
218    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
219    R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
220  else
221    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
222    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
223    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
224    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
225  fi
226fi
227#
228IGCM_sys_MkdirArchive ${R_FIGR}
229
230R_ATLAS=ATLAS/SE_${YEARS}
231R_OUT_ATM=${R_SAVE}/ATM
232DIR_OUT=${DIR_OUT:=SE}
233
234RUN_DIR=${RUN_DIR_PATH}/ATLAS_LMDZ_${YEARS}
235IGCM_sys_MkdirWork ${RUN_DIR}
236IGCM_sys_Cd ${RUN_DIR}
237
238# --------------------------------------------
239# Insert your commands between III...III lines
240# and precise produced directories to save
241# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
242
243IGCM_sys_Get ${R_OUT_ATM}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc ${RUN_DIR}
244
245# Only LMDZ4 output have Alt variables
246DetectLev=$( ncdump -h ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc | grep "Alt(Alt)" | wc -l )
247#
248[ ${DetectLev} = 1 ] && LMDZ=LMDZ4 || LMDZ=LMDZ3.3
249#
250atlas -o ${RUN_DIR}/${R_ATLAS}/ATM -l ${FER_ATLAS}/atlas_p_${LMDZ}_diag1_*.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc
251
252# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
253
254# Put ferret journal files together
255for file in $( ls ${R_ATLAS}/ATM/*/*jnl ) ; do 
256    echo -e "\n\n################################" ;
257    echo -e "$file\n" ; cat $file ;
258done  > ${R_ATLAS}/ATM/allferretscript.txt
259
260# Clear some files
261find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
262
263# Save files
264IGCM_sys_Put_Dir ATLAS ${R_FIGR}
265IGCM_sys_Rm -Rf ATLAS
266IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc
267
268# DODS copy
269IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
270[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
271
272# Clean RUN_DIR_PATH (necessary for cesium and titane only)
273IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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