source: tags/libIGCM_v2.0_beta3/AA_atlas_ORCHIDEE @ 1137

Last change on this file since 1137 was 681, checked in by mafoipsl, 12 years ago

On curie : Computing job on -q standard ie thin nodes, post-processing jobs on -q large ie large nodes. Stop default echo of commands.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.9 KB
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1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_ORCH       # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_ORCH       # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- curie #MSUB -q large
20#-Q- curie set +x
21#-Q- platine #!/usr/bin/ksh
22#-Q- platine ##################
23#-Q- platine ## PLATINE   CEA ##
24#-Q- platine ##################
25#-Q- platine #BSUB -J ATL_ORCH          # Nom du job
26#-Q- platine #BSUB -N                   # message a la fin du job
27#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
28#-Q- platine #BSUB -W 1:00              # Limite temps
29#-Q- platine #BSUB -q post              # Passage en queue post
30#-Q- platine #BSUB -L /bin/ksh
31#-Q- sx8brodie #!/bin/ksh
32#-Q- sx8brodie #######################
33#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
34#-Q- sx8brodie #######################
35#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
36#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
37#-Q- sx8brodie # Nom du travail LoadLeveler
38#-Q- sx8brodie # @ job_name   = ATL_ORCH
39#-Q- sx8brodie # Fichier de sortie standard du travail       
40#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
41#-Q- sx8brodie # Fichier de sortie d'erreur du travail
42#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
43#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
44#-Q- sx8brodie # @ notification = error
45#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
46#-Q- sx8brodie # @ queue
47#-Q- aix6 #!/bin/ksh
48#-Q- aix6 #######################
49#-Q- aix6 ##   VARGAS   IDRIS  ##
50#-Q- aix6 #######################
51#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
52#-Q- aix6 # @ wall_clock_limit = 1:00:00
53#-Q- aix6 # Nom du travail LoadLeveler
54#-Q- aix6 # @ job_name   = ATL_ORCH
55#-Q- aix6 # Fichier de sortie standard du travail       
56#-Q- aix6 # @ output     = $(job_name).$(jobid)
57#-Q- aix6 # Fichier de sortie d'erreur du travail
58#-Q- aix6 # @ error      =  $(job_name).$(jobid)
59#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
60#-Q- aix6 # @ notification = error
61#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
62#-Q- aix6 # @ queue
63#-Q- ulam #!/bin/ksh
64#-Q- ulam #######################
65#-Q- ulam ##   ULAM   IDRIS  ##
66#-Q- ulam #######################
67#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
68#-Q- ulam # @ wall_clock_limit = 1:00:00
69#-Q- ulam # Nom du travail LoadLeveler
70#-Q- ulam # @ job_name   = ATL_ORCH
71#-Q- ulam # Fichier de sortie standard du travail       
72#-Q- ulam # @ output     = $(job_name).$(jobid)
73#-Q- ulam # Fichier de sortie d'erreur du travail
74#-Q- ulam # @ error      =  $(job_name).$(jobid)
75#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
76#-Q- ulam # @ notification = error
77#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
78#-Q- ulam # @ queue
79#-Q- sx8mercure #!/bin/ksh
80#-Q- sx8mercure ######################
81#-Q- sx8mercure ## SX8MERCURE   CEA ##
82#-Q- sx8mercure ######################
83#-Q- sx8mercure #PBS -N  ATL_ORCH            # Nom du job
84#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
85#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
86#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
87#-Q- sx8mercure #PBS -l cputim_job=1:00:00   # Limite temps a 2 heures
88#-Q- sx8mercure #PBS -q scalaire
89#-Q- sx8mercure #PBS -r n
90#-Q- sx9mercure #!/bin/ksh
91#-Q- sx9mercure ######################
92#-Q- sx9mercure ## SX9MERCURE  CCRT ##
93#-Q- sx9mercure ######################
94#-Q- sx9mercure #PBS -N  ATL_ORCH            # Nom du job
95#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
96#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
97#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
98#-Q- sx9mercure #PBS -l elapstim_req=1:00:00   # Limite temps a 2 heures
99#-Q- sx9mercure #PBS -q scalaire
100#-Q- sx9mercure #PBS -r n
101#-Q- titane #!/bin/ksh
102#-Q- titane ######################
103#-Q- titane ## TITANE   CEA ##
104#-Q- titane ######################
105#-Q- titane #MSUB -r ATL_ORCH       # Nom du job               
106#-Q- titane #MSUB -eo
107#-Q- titane #MSUB -n 1              # Reservation du processus
108#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
109#-Q- titane #MSUB -q mono
110#-Q- titane #MSUB -E '-rn'
111#-Q- lxiv8 ######################
112#-Q- lxiv8 ## OBELIX      LSCE ##
113#-Q- lxiv8 ######################
114#-Q- lxiv8 #PBS -N ATL_ORCH
115#-Q- lxiv8 #PBS -m a
116#-Q- lxiv8 #PBS -j oe
117#-Q- lxiv8 #PBS -q medium
118#-Q- lxiv8 #PBS -o ATL_ORCH.$$
119#-Q- lxiv8 #PBS -S /bin/ksh
120#-Q- default #!/bin/ksh
121#-Q- default ##################
122#-Q- default ## DEFAULT HOST ##
123#-Q- default ##################
124
125#**************************************************************
126# Author: Martial Mancip
127# Contact: Martial.Mancip__at__ipsl.jussieu.fr
128# $Revision::                                          $ Revision of last commit
129# $Author::                                            $ Author of last commit
130# $Date::                                              $ Date of last commit
131# IPSL (2006)
132#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
133#
134#**************************************************************
135
136#set -eu
137#set -vx
138
139date
140
141#-Q- sx8brodie export OMP_NUM_THREADS=1
142#-Q- aix6 export OMP_NUM_THREADS=1
143#-Q- ulam export OMP_NUM_THREADS=1
144
145########################################################################
146
147. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
148      ( ${DEBUG_debug} ) && IGCM_debug_Check
149. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
150     ( ${DEBUG_debug} ) && IGCM_card_Check
151. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
152     ( ${DEBUG_debug} ) && IGCM_date_Check
153#-------
154. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
155
156########################################################################
157
158#set -vx
159
160IGCM_sys_MkdirWork ${RUN_DIR_PATH}
161IGCM_sys_Cd ${RUN_DIR_PATH}
162
163# ------------------------------------------------------------------
164# Test if all was right before proceeding further
165# ------------------------------------------------------------------
166IGCM_debug_Verif_Exit_Post
167
168if [ ${StandAlone} = true ] ; then
169    CARD_DIR=${SUBMIT_DIR}
170else
171    CARD_DIR=${RUN_DIR_PATH}
172    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
173    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
174    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
175    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
176fi
177#
178# First of all
179#
180IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
181typeset option
182for option in ${config_UserChoices[*]} ; do
183    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
184done
185
186IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card Ensemble
187typeset option
188for option in ${config_Ensemble[*]} ; do
189    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option}
190done
191#
192echo
193IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
194IGCM_debug_PrintVariables 3 config_UserChoices_JobName
195IGCM_debug_PrintVariables 3 config_UserChoices_LongName
196IGCM_debug_PrintVariables 3 config_UserChoices_TagName
197IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
198IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
199IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
200IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
201IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
202IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
203IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleName
204IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleDate
205echo
206
207#==================================
208#R_SAVE : Job output directory
209#R_BUFR : Job output buffered directory
210if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
211  FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
212  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
213    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
214    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
215    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
216    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
217  else
218    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
219    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
220    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
221    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
222  fi
223else
224  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
225    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
226    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
227    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
228    R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
229  else
230    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
231    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
232    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
233    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
234  fi
235fi
236#
237IGCM_sys_MkdirArchive ${R_FIGR}
238
239R_ATLAS=ATLAS/SE_${YEARS}
240R_OUT_SRF=${R_SAVE}/SRF
241DIR_OUT=${DIR_OUT:=SE}
242
243RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS}
244IGCM_sys_MkdirWork ${RUN_DIR}
245IGCM_sys_Cd ${RUN_DIR}
246
247# --------------------------------------------
248# Insert your commands between III...III lines
249# and precise produced directories to save
250# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
251
252IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR}
253
254atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \
255                                       ${FER_ATLAS}/atlas_p_SECHIBA_diag1_*.cfg \
256                                       ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc
257
258# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
259
260# Put ferret journal files together
261for file in $( ls ${R_ATLAS}/SRF/*/*jnl ) ; do 
262    echo -e "\n\n################################" ;
263    echo -e "$file\n" ; cat $file ;
264done  > ${R_ATLAS}/SRF/allferretscript.txt
265
266# Clear some files
267find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
268
269# Save files
270IGCM_sys_Put_Dir ATLAS ${R_FIGR}
271IGCM_sys_Rm -Rf ATLAS
272IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc
273
274# DODS copy
275IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
276[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
277
278# Clean RUN_DIR_PATH (necessary for cesium and titane only)
279IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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