source: tags/libIGCM_v2.0_beta3/AA_atlas_PISCES @ 1137

Last change on this file since 1137 was 681, checked in by mafoipsl, 12 years ago

On curie : Computing job on -q standard ie thin nodes, post-processing jobs on -q large ie large nodes. Stop default echo of commands.
  • Property svn:keywords set to Revision Author Date
File size: 13.1 KB
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1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_PIS        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_PIS        # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- curie #MSUB -q large
20#-Q- curie set +x
21#-Q- platine #!/usr/bin/ksh
22#-Q- platine ##################
23#-Q- platine ## PLATINE   CEA ##
24#-Q- platine ##################
25#-Q- platine #BSUB -J ATL_PIS           # Nom du job
26#-Q- platine #BSUB -N                   # message a la fin du job
27#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
28#-Q- platine #BSUB -W 1:00              # Limite temps
29#-Q- platine #BSUB -q post              # Passage en queue post
30#-Q- platine #BSUB -L /bin/ksh
31#-Q- sx8brodie #!/bin/ksh
32#-Q- sx8brodie #######################
33#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
34#-Q- sx8brodie #######################
35#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
36#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
37#-Q- sx8brodie # Nom du travail LoadLeveler
38#-Q- sx8brodie # @ job_name   = ATL_PIS
39#-Q- sx8brodie # Fichier de sortie standard du travail       
40#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
41#-Q- sx8brodie # Fichier de sortie d'erreur du travail
42#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
43#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
44#-Q- sx8brodie # @ notification = error
45#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
46#-Q- sx8brodie # @ queue
47#-Q- aix6 #!/bin/ksh
48#-Q- aix6 #######################
49#-Q- aix6 ##   VARGAS   IDRIS  ##
50#-Q- aix6 #######################
51#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
52#-Q- aix6 # @ wall_clock_limit = 1:00:00
53#-Q- aix6 # Nom du travail LoadLeveler
54#-Q- aix6 # @ job_name   = ATL_PIS
55#-Q- aix6 # Fichier de sortie standard du travail       
56#-Q- aix6 # @ output     = $(job_name).$(jobid)
57#-Q- aix6 # Fichier de sortie d'erreur du travail
58#-Q- aix6 # @ error      =  $(job_name).$(jobid)
59#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
60#-Q- aix6 # @ notification = error
61#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
62#-Q- aix6 # @ queue
63#-Q- ulam #!/bin/ksh
64#-Q- ulam #######################
65#-Q- ulam ##   ULAM   IDRIS  ##
66#-Q- ulam #######################
67#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
68#-Q- ulam # @ wall_clock_limit = 1:00:00
69#-Q- ulam # Nom du travail LoadLeveler
70#-Q- ulam # @ job_name   = ATL_PIS
71#-Q- ulam # Fichier de sortie standard du travail       
72#-Q- ulam # @ output     = $(job_name).$(jobid)
73#-Q- ulam # Fichier de sortie d'erreur du travail
74#-Q- ulam # @ error      =  $(job_name).$(jobid)
75#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
76#-Q- ulam # @ notification = error
77#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
78#-Q- ulam # @ queue
79#-Q- sx8mercure #!/bin/ksh
80#-Q- sx8mercure ######################
81#-Q- sx8mercure ## SX8MERCURE   CEA ##
82#-Q- sx8mercure ######################
83#-Q- sx8mercure #PBS -N  ATL_PIS             # Nom du job
84#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
85#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
86#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
87#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
88#-Q- sx8mercure #PBS -q scalaire
89#-Q- sx8mercure #PBS -r n
90#-Q- sx9mercure #!/bin/ksh
91#-Q- sx9mercure ######################
92#-Q- sx9mercure ## SX9MERCURE  CCRT ##
93#-Q- sx9mercure ######################
94#-Q- sx9mercure #PBS -N  ATL_PIS             # Nom du job
95#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
96#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
97#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
98#-Q- sx9mercure #PBS -l elapstim_req=2:00:00   # Limite temps a 2 heures
99#-Q- sx9mercure #PBS -q scalaire
100#-Q- sx9mercure #PBS -r n
101#-Q- titane #!/bin/ksh
102#-Q- titane ######################
103#-Q- titane ## TITANE   CEA ##
104#-Q- titane ######################
105#-Q- titane #MSUB -r ATL_PIS        # Nom du job
106#-Q- titane #MSUB -eo
107#-Q- titane #MSUB -n 1              # Reservation du processus
108#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
109#-Q- titane #MSUB -q mono
110#-Q- titane #MSUB -E '-rn'
111#-Q- default #!/bin/ksh
112#-Q- default ##################
113#-Q- default ## DEFAULT HOST ##
114#-Q- default ##################
115
116#**************************************************************
117# Author: Christian Ethe
118# Contact: Christian.Ethe__at__ipsl.jussieu.fr
119# $Revision::                                          $ Revision of last commit
120# $Author::                                            $ Author of last commit
121# $Date::                                              $ Date of last commit
122# IPSL (2006)
123#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
124#
125#**************************************************************
126
127#set -eu
128#set -vx
129
130date
131
132#-Q- sx8brodie export OMP_NUM_THREADS=1
133#-Q- aix6 export OMP_NUM_THREADS=1
134#-Q- ulam export OMP_NUM_THREADS=1
135
136########################################################################
137
138. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
139      ( ${DEBUG_debug} ) && IGCM_debug_Check
140. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
141     ( ${DEBUG_debug} ) && IGCM_card_Check
142. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
143     ( ${DEBUG_debug} ) && IGCM_date_Check
144#-------
145. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
146
147########################################################################
148
149#set -vx
150
151IGCM_sys_MkdirWork ${RUN_DIR_PATH}
152IGCM_sys_Cd ${RUN_DIR_PATH}
153
154# ------------------------------------------------------------------
155# Test if all was right before proceeding further
156# ------------------------------------------------------------------
157IGCM_debug_Verif_Exit_Post
158
159if [ ${StandAlone} = true ] ; then
160    CARD_DIR=${SUBMIT_DIR}
161else
162    CARD_DIR=${RUN_DIR_PATH}
163    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
164    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
165    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
166    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
167fi
168#
169# First of all
170#
171IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
172typeset option
173for option in ${config_UserChoices[*]} ; do
174    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
175done
176
177IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card Ensemble
178typeset option
179for option in ${config_Ensemble[*]} ; do
180    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option}
181done
182#
183echo
184IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
185IGCM_debug_PrintVariables 3 config_UserChoices_JobName
186IGCM_debug_PrintVariables 3 config_UserChoices_LongName
187IGCM_debug_PrintVariables 3 config_UserChoices_TagName
188IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
189IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
190IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
191IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
192IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
193IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
194IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleName
195IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleDate
196echo
197
198#==================================
199#R_SAVE : Job output directory
200#R_BUFR : Job output buffered directory
201if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
202  FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
203  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
204    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
205    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
206    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
207    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
208  else
209    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
210    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
211    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
212    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
213  fi
214else
215  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
216    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
217    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
218    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
219    R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
220  else
221    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
222    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
223    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
224    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
225  fi
226fi
227#
228IGCM_sys_MkdirArchive ${R_FIGR}
229
230R_ATLAS=ATLAS/SE_${YEARS}
231R_OUT_MBG=${R_SAVE}/MBG
232DIR_OUT=${DIR_OUT:=SE}
233
234RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS}
235IGCM_sys_MkdirWork ${RUN_DIR}
236IGCM_sys_Cd ${RUN_DIR}
237
238# --------------------------------------------
239# Insert your commands between III...III lines
240# and precise produced directories to save
241# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
242
243IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR}
244IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR}
245
246atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \
247                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
248atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg  \
249                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
250
251# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
252
253# Put ferret journal files together
254for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do
255    echo -e "\n\n################################" ;
256    echo -e "$file\n" ; cat $file ;
257done  > ${R_ATLAS}/MBG_T/allferretscript.txt
258
259for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do
260    echo -e "\n\n################################" ;
261    echo -e "$file\n" ; cat $file ;
262done  > ${R_ATLAS}/MBG_F/allferretscript.txt
263# Clear some files
264find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
265
266# Save files
267IGCM_sys_Put_Dir ATLAS ${R_FIGR}
268
269IGCM_sys_Rm -Rf ATLAS
270IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
271IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
272
273# DODS copy
274IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
275[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
276
277# Clean RUN_DIR_PATH (necessary for cesium and titane only)
278IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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