| 1 | #-Q- cesium #!/bin/ksh |
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| 2 | #-Q- cesium ###################### |
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| 3 | #-Q- cesium ## CESIUM CEA ## |
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| 4 | #-Q- cesium ###################### |
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| 5 | #-Q- cesium #MSUB -r MULTISE # Nom du job |
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| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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| 9 | #-Q- cesium #MSUB -E "-j o" |
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| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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| 11 | #-Q- curie ###################### |
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| 12 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 13 | #-Q- curie ###################### |
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| 14 | #-Q- curie #MSUB -r MULTISE # Nom du job |
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| 15 | #-Q- curie #MSUB -eo |
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| 16 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 17 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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| 18 | #-Q- curie #MSUB -E '--no-requeue' |
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| 19 | #-Q- curie #MSUB -q large |
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| 20 | #-Q- curie set +x |
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| 21 | #-Q- platine #!/usr/bin/ksh |
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| 22 | #-Q- platine ################### |
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| 23 | #-Q- platine ## PLATINE CEA ## |
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| 24 | #-Q- platine ################### |
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| 25 | #-Q- platine #BSUB -J MULTISE # Nom du job |
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| 26 | #-Q- platine #BSUB -N # message a la fin du job |
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| 27 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 28 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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| 29 | #-Q- platine #BSUB -q post # Passage en queue post |
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| 30 | #-Q- platine #BSUB -L /bin/ksh |
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| 31 | #-Q- sx8brodie #!/bin/ksh |
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| 32 | #-Q- sx8brodie ####################### |
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| 33 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 34 | #-Q- sx8brodie ####################### |
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| 35 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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| 36 | #-Q- sx8brodie # @ wall_clock_limit = 1:00:00 |
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| 37 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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| 38 | #-Q- sx8brodie # @ job_name = MULTISE |
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| 39 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 40 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 41 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 42 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 43 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 44 | #-Q- sx8brodie # @ notification = error |
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| 45 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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| 46 | #-Q- sx8brodie # @ queue |
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| 47 | #-Q- aix6 #!/bin/ksh |
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| 48 | #-Q- aix6 ####################### |
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| 49 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 50 | #-Q- aix6 ####################### |
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| 51 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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| 52 | #-Q- aix6 # @ wall_clock_limit = 1:00:00 |
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| 53 | #-Q- aix6 # Nom du travail LoadLeveler |
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| 54 | #-Q- aix6 # @ job_name = MULTISE |
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| 55 | #-Q- aix6 # Fichier de sortie standard du travail |
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| 56 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 57 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 58 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 59 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 60 | #-Q- aix6 # @ notification = error |
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| 61 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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| 62 | #-Q- aix6 # @ queue |
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| 63 | #-Q- ulam #!/bin/ksh |
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| 64 | #-Q- ulam ####################### |
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| 65 | #-Q- ulam ## ULAM IDRIS ## |
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| 66 | #-Q- ulam ####################### |
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| 67 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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| 68 | #-Q- ulam # @ wall_clock_limit = 1:00:00 |
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| 69 | #-Q- ulam # Nom du travail LoadLeveler |
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| 70 | #-Q- ulam # @ job_name = MULTISE |
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| 71 | #-Q- ulam # Fichier de sortie standard du travail |
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| 72 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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| 73 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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| 74 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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| 75 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 76 | #-Q- ulam # @ notification = error |
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| 77 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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| 78 | #-Q- ulam # @ queue |
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| 79 | #-Q- sx8mercure #!/bin/ksh |
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| 80 | #-Q- sx8mercure ###################### |
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| 81 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 82 | #-Q- sx8mercure ###################### |
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| 83 | #-Q- sx8mercure #PBS -N MULTISE # Nom du job |
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| 84 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 85 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 86 | #-Q- sx8mercure #PBS -l memsz_job=8gb # Limite memoire a 1 Go |
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| 87 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 1 heures |
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| 88 | #-Q- sx8mercure #PBS -q scalaire |
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| 89 | #-Q- sx8mercure #PBS -r n |
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| 90 | #-Q- sx9mercure #!/bin/ksh |
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| 91 | #-Q- sx9mercure ###################### |
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| 92 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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| 93 | #-Q- sx9mercure ###################### |
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| 94 | #-Q- sx9mercure #PBS -N MULTISE # Nom du job |
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| 95 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 96 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 97 | #-Q- sx9mercure #PBS -l memsz_job=8gb # Limite memoire a 1 Go |
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| 98 | #-Q- sx9mercure #PBS -l elapstim_req=24:00:00 # Limite temps a 1 heures |
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| 99 | #-Q- sx9mercure #PBS -q scalaire |
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| 100 | #-Q- sx9mercure #PBS -r n |
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| 101 | #-Q- titane #!/bin/ksh |
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| 102 | #-Q- titane ###################### |
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| 103 | #-Q- titane ## TITANE CEA ## |
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| 104 | #-Q- titane ###################### |
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| 105 | #-Q- titane #MSUB -r MULTISE # Nom du job |
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| 106 | #-Q- titane #MSUB -eo |
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| 107 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 108 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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| 109 | #-Q- titane #MSUB -q mono |
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| 110 | #-Q- titane #MSUB -E '-rn' |
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| 111 | #-Q- lxiv8 ###################### |
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| 112 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 113 | #-Q- lxiv8 ###################### |
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| 114 | #-Q- lxiv8 #PBS -N MULTISE |
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| 115 | #-Q- lxiv8 #PBS -m a |
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| 116 | #-Q- lxiv8 #PBS -j oe |
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| 117 | #-Q- lxiv8 #PBS -q medium |
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| 118 | #-Q- lxiv8 #PBS -o SE.$$ |
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| 119 | #-Q- lxiv8 #PBS -S /bin/ksh |
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| 120 | #-Q- default #!/bin/ksh |
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| 121 | #-Q- default ################## |
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| 122 | #-Q- default ## DEFAULT HOST ## |
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| 123 | #-Q- default ################## |
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| 124 | |
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| 125 | #************************************************************** |
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| 126 | # Author: Marie-Alice Foujols |
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| 127 | # Contact: Marie-Alice.Foujols__at__ipsl.jussieu.fr |
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| 128 | # $Revision:: $ Revision of last commit |
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| 129 | # $Author:: $ Author of last commit |
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| 130 | # $Date:: $ Date of last commit |
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| 131 | # IPSL (2006) |
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| 132 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 133 | # |
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| 134 | #************************************************************** |
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| 135 | |
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| 136 | #set -eu |
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| 137 | #set -vx |
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| 138 | |
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| 139 | date |
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| 140 | |
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| 141 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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| 142 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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| 143 | #-Q- ulam export OMP_NUM_THREADS=1 |
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| 144 | |
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| 145 | ######################################################################## |
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| 146 | |
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| 147 | #D- Flag to determine if this job in a standalone mode |
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| 148 | #D- Default : value from AA_job if any |
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| 149 | StandAlone=${StandAlone:=true} |
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| 150 | |
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| 151 | #D- Path to libIGCM |
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| 152 | #D- Default : value from AA_job if any |
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| 153 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
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| 154 | # WARNING you must check MirrorlibIGCM variable in sys library. |
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| 155 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
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| 156 | # WARNING of your running libIGCM directory. |
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| 157 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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| 158 | |
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| 159 | #D- Flag to determine atlas job's output directory |
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| 160 | #D- Default : value from libIGCM_post.ksh if any |
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| 161 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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| 162 | |
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| 163 | #D- Increased verbosity (1, 2, 3) |
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| 164 | #D- Default : value from AA_job if any |
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| 165 | Verbosity=${Verbosity:=3} |
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| 166 | |
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| 167 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 168 | #D- Default : value from AA_job if any |
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| 169 | DEBUG_debug=${DEBUG_debug:=false} |
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| 170 | |
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| 171 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 172 | #D- Default : value from atmospheric driver if any |
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| 173 | RESOL_ATM=${RESOL_ATM:=ALL} |
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| 174 | |
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| 175 | #D- Flag to determine surface resolution |
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| 176 | #D- Default : value from surface driver if any |
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| 177 | RESOL_SRF=ALL |
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| 178 | |
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| 179 | #D- Flag to determine surface resolution |
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| 180 | #D- Default : value from surface driver if any |
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| 181 | RESOL_SBG=ALL |
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| 182 | |
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| 183 | #D- TEMPORARY Flag to determine ocean resolution |
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| 184 | #D- Default : value from ocean driver if any |
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| 185 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 186 | |
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| 187 | #D- TEMPORARY Flag to determine ice resolution |
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| 188 | #D- Default : value from ice driver if any |
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| 189 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 190 | |
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| 191 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 192 | #D- Default : value from ice driver if any |
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| 193 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 194 | |
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| 195 | ######################################################################## |
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| 196 | |
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| 197 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 198 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 199 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 200 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 201 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 202 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 203 | #------- |
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| 204 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 205 | |
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| 206 | ######################################################################## |
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| 207 | |
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| 208 | #set -vx |
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| 209 | |
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| 210 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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| 211 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 212 | |
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| 213 | # ------------------------------------------------------------------ |
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| 214 | # Test if all was right before proceeding further |
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| 215 | # ------------------------------------------------------------------ |
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| 216 | IGCM_debug_Verif_Exit_Post |
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| 217 | |
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| 218 | if [ ${StandAlone} = true ] ; then |
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| 219 | CARD_DIR=${SUBMIT_DIR} |
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| 220 | else |
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| 221 | CARD_DIR=${RUN_DIR_PATH} |
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| 222 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 223 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 224 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 225 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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| 226 | fi |
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| 227 | |
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| 228 | # |
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| 229 | # First of all |
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| 230 | # |
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| 231 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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| 232 | typeset option |
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| 233 | for option in ${config_UserChoices[*]} ; do |
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| 234 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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| 235 | done |
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| 236 | |
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| 237 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Ensemble |
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| 238 | typeset option |
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| 239 | for option in ${config_Ensemble[*]} ; do |
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| 240 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option} |
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| 241 | done |
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| 242 | # |
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| 243 | echo |
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| 244 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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| 245 | #IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName |
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| 246 | #IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName |
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| 247 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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| 248 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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| 249 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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| 250 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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| 251 | IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleName |
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| 252 | IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleDate |
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| 253 | echo |
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| 254 | |
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| 255 | #================================== |
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| 256 | #R_SAVE : Job output directory |
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| 257 | #R_BUFR : Job output buffered directory |
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| 258 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
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| 259 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
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| 260 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
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| 261 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 262 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 263 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName} |
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| 264 | else |
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| 265 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 266 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 267 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 268 | fi |
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| 269 | else |
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| 270 | if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then |
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| 271 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 272 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 273 | R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName} |
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| 274 | else |
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| 275 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 276 | R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 277 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 278 | fi |
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| 279 | fi |
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| 280 | # |
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| 281 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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| 282 | |
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| 283 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card Post |
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| 284 | |
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| 285 | # |
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| 286 | # If option MultiSeasonalFrequency is not found (optionnal) put MultiSeasonalFrequency=50Y |
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| 287 | # |
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| 288 | FoundMultiSeasonal=false |
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| 289 | for option in ${config_Post[*]} ; do |
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| 290 | if [ ${option} = MultiSeasonalFrequency ] ; then |
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| 291 | FoundMultiSeasonal=true |
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| 292 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post MultiSeasonalFrequency |
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| 293 | fi |
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| 294 | done |
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| 295 | if [ ! X${FoundMultiSeasonal} = Xtrue ] ; then |
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| 296 | config_Post_MultiSeasonalFrequency=50Y |
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| 297 | fi |
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| 298 | # |
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| 299 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
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| 300 | # |
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| 301 | # Determine period for seasonnal average. Default : value from AA_job if any |
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| 302 | # |
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| 303 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 304 | # |
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| 305 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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| 306 | # |
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| 307 | IGCM_debug_Print 1 "DefineVariableFromOption : Post " |
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| 308 | IGCM_debug_PrintVariables 3 config_Post_SeasonalFrequency |
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| 309 | IGCM_debug_PrintVariables 3 config_Post_MultiSeasonalFrequency |
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| 310 | echo |
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| 311 | |
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| 312 | # |
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| 313 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
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| 314 | # |
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| 315 | multifreq=$( echo ${config_Post_MultiSeasonalFrequency} | sed -e "s/[yY]//" ) |
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| 316 | # |
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| 317 | DIR_OUT=SE_${multifreq}Y |
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| 318 | # |
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| 319 | an_multi_fin=$(( $( IGCM_date_ConvertGregorianDateToJulian ${PeriodDateEnd} ) / 1000 )) |
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| 320 | an_multi_deb=$( IGCM_date_YearDigit $(( an_multi_fin - multifreq + 1 )) ) |
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| 321 | an_multi_fin=$( IGCM_date_YearDigit ${an_multi_fin} ) |
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| 322 | # |
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| 323 | # For each component selected determine which files need post-processing |
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| 324 | # |
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| 325 | for comp in ${config_ListOfComponents[*]} ; do |
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| 326 | # |
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| 327 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 328 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 329 | # |
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| 330 | card=${CARD_DIR}/COMP/${compname}.card |
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| 331 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 332 | # |
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| 333 | ListFilesName=${compname}_OutputFiles_List |
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| 334 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 335 | # |
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| 336 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 337 | # |
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| 338 | # INITIALISATION |
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| 339 | # |
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| 340 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 341 | typeset i=2 |
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| 342 | # |
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| 343 | until [ $i -gt $NbFiles ]; do |
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| 344 | # |
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| 345 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 346 | # |
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| 347 | if [ X${flag_post} != XNONE ] ; then |
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| 348 | # |
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| 349 | # Check if seasonal is required for this file |
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| 350 | # |
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| 351 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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| 352 | # |
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| 353 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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| 354 | # |
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| 355 | # variable option allready typeset above |
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| 356 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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| 357 | if [ ${option} = Seasonal ] ; then |
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| 358 | FoundSeasonal=true |
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| 359 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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| 360 | fi |
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| 361 | done |
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| 362 | # |
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| 363 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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| 364 | eval ${compname}_${flag_post}_Seasonal=ON |
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| 365 | fi |
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| 366 | # |
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| 367 | if [ ! X$( eval echo \${${compname}_${flag_post}_Seasonal} ) = XON ] ; then |
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| 368 | (( i=i+3 )) |
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| 369 | continue |
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| 370 | fi |
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| 371 | # |
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| 372 | # CREATE LIST |
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| 373 | # |
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| 374 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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| 375 | # |
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| 376 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
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| 377 | # |
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| 378 | MULTI_DIRECTORY=${R_SAVE}/${comp}/Analyse/${DIR_OUT} |
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| 379 | # |
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| 380 | TestedFile=${config_UserChoices_JobName}_SE_${an_multi_deb}_${an_multi_fin}_${FILE}.nc |
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| 381 | # |
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| 382 | IGCM_sys_TestFileArchive ${MULTI_DIRECTORY}/${TestedFile} |
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| 383 | if [ ! $? = 0 ] ; then |
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| 384 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
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| 385 | fi |
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| 386 | fi |
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| 387 | (( i=i+3 )) |
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| 388 | done # until [ $i -eq $NbFiles ] |
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| 389 | fi |
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| 390 | done # for comp |
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| 391 | |
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| 392 | for comp in ${config_ListOfComponents[*]} ; do |
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| 393 | # |
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| 394 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 395 | # |
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| 396 | i=0 |
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| 397 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
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| 398 | # |
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| 399 | RESULT_MULTI_SE=${config_UserChoices_JobName}_SE_${an_multi_deb}_${an_multi_fin}_${file}.nc |
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| 400 | # Do not redo an existing SE |
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| 401 | IGCM_sys_TestFileArchive ${R_SAVE}/${comp}/Analyse/${DIR_OUT}/${RESULT_MULTI_SE} |
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| 402 | if [ $? = 0 ] ; then |
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| 403 | continue |
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| 404 | fi |
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| 405 | # |
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| 406 | eval file_path=\${R_OUT_${comp}}/Analyse/SE/ |
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| 407 | # |
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| 408 | (( an = an_multi_deb )) |
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| 409 | # Initialize array |
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| 410 | #set -A liste_file_se |
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| 411 | #set -A liste_file_se_tmp |
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| 412 | unset liste_file_se |
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| 413 | unset liste_file_se_tmp |
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| 414 | while [ ${an} -le ${an_multi_fin} ] ; do |
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| 415 | # |
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| 416 | an_deb=$(printf "%04i\n" ${an} ) |
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| 417 | # |
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| 418 | (( an_fin = an_deb + freq - 1 )) |
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| 419 | date=${an_deb}_${an_fin} |
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| 420 | #set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 421 | #set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 422 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_SE_${date}_${file}.nc |
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| 423 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_SE_${date}_${file}.nc |
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| 424 | (( an = an + freq )) |
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| 425 | done |
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| 426 | # |
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| 427 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 428 | IGCM_debug_Verif_Exit_Post |
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| 429 | # Search of common list of variables to be treated |
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| 430 | nbfile=0 |
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| 431 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
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| 432 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
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| 433 | (( nbfile = nbfile + 1 )) |
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| 434 | done |
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| 435 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
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| 436 | IGCM_sys_Rm tmpfile_ncra |
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| 437 | |
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| 438 | # detect time counter : time or time_counter ie unlimited variable |
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| 439 | var_unlim=$(ncdump -h ${liste_file_se_tmp[1]}|grep UNLIMITED|awk '{print $1}') |
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| 440 | |
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| 441 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 442 | # |
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| 443 | (( nb = ${mois} - 1 )) |
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| 444 | # |
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| 445 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 446 | IGCM_sys_ncra -O -v ${list_var_final_ncra} -d ${var_unlim},${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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| 447 | done |
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| 448 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 449 | # |
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| 450 | |
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| 451 | # Search of common list of variables to be treated |
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| 452 | nbfile=0 |
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| 453 | for file_common_var in ${OUT_SE[*]} ; do |
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| 454 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncrcat |
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| 455 | (( nbfile = nbfile + 1 )) |
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| 456 | done |
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| 457 | list_var_final_ncrcat=`cat tmpfile_ncrcat | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
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| 458 | IGCM_sys_Rm tmpfile_ncrcat |
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| 459 | |
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| 460 | IGCM_sys_ncrcat -O -v ${list_var_final_ncrcat} ${OUT_SE[*]} ${RESULT_MULTI_SE} |
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| 461 | # |
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| 462 | IGCM_sys_Rm ${OUT_SE[*]} |
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| 463 | |
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| 464 | # Put correct climatological axis following calendar |
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| 465 | case ${config_UserChoices_CalendarType} in |
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| 466 | 360d|360_day) |
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| 467 | # 360 days |
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| 468 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15, 45, 75, 105, 135, 165, 195, 225, 255, 285, 315, 345.} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 30, 30, 60, 60, 90, 90, 120, 120, 150, 150, 180, 180, 210, 210, 240, 240, 270, 270, 300, 300, 330, 330, 360.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"360_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
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| 469 | ;; |
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| 470 | noleap|365_day) |
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| 471 | # 365 days |
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| 472 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45, 74.5, 105, 135.5, 166, 196.5, 227.5, 258, 288.5, 319, 349.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59, 59, 90, 90, 120, 120, 151, 151, 181, 181, 212, 212, 243, 243, 273, 273, 304, 304, 334, 334, 365.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"365_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
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| 473 | ;; |
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| 474 | all_leap|366_day) |
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| 475 | # 366 days |
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| 476 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.5, 75.5, 106, 136.5, 167, 197.5, 228.5, 259, 289.5, 320, 350.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 60, 60, 91, 91, 121, 121, 152, 152, 182, 182, 213, 213, 244, 244, 274, 274, 305, 305, 335, 335, 366.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"366_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
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| 477 | ;; |
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| 478 | leap|gregorian|standard) |
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| 479 | # 365.2425 days |
|---|
| 480 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.12125, 74.7425, 105.2425, 135.7425, 166.2425, 196.7425, 227.7425, 258.2425, 288.7425, 319.2425, 349.7425} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59.2425, 59.2425, 90.2425, 90.2425, 120.2425, 120.2425, 151.2425, 151.2425, 181.2425, 181.2425, 212.2425, 212.2425, 243.2425, 243.2425, 273.2425, 273.2425, 304.2425, 304.2425, 334.2425, 334.2425, 365.2425} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"gregorian\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
|---|
| 481 | ;; |
|---|
| 482 | esac |
|---|
| 483 | eval IGCM_sys_ncap2 -Oh -s $ncap2cmd ${RESULT_MULTI_SE} tmp.nc |
|---|
| 484 | IGCM_sys_Rm ${RESULT_MULTI_SE} |
|---|
| 485 | IGCM_sys_Mv tmp.nc ${RESULT_MULTI_SE} |
|---|
| 486 | # |
|---|
| 487 | eval IGCM_sys_Put_Out ${RESULT_MULTI_SE} \${R_OUT_${comp}}/Analyse/${DIR_OUT}/${RESULT_MULTI_SE} |
|---|
| 488 | IGCM_sys_Rm ${RESULT_MULTI_SE} |
|---|
| 489 | # |
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| 490 | done |
|---|
| 491 | done |
|---|
| 492 | |
|---|
| 493 | # DODS copy |
|---|
| 494 | for comp in ${config_ListOfComponents[*]} ; do |
|---|
| 495 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${DIR_OUT} |
|---|
| 496 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${DIR_OUT} |
|---|
| 497 | done |
|---|
| 498 | |
|---|
| 499 | YEARS=${an_multi_deb}_${an_multi_fin} |
|---|
| 500 | |
|---|
| 501 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
|---|
| 502 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
|---|
| 503 | export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS; export DIR_OUT |
|---|
| 504 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS,DIR_OUT" |
|---|
| 505 | export listVarEnv; |
|---|
| 506 | |
|---|
| 507 | #D- |
|---|
| 508 | # -------------------------------------------------------------------- |
|---|
| 509 | #D- Test if all was right before ATLAS |
|---|
| 510 | # -------------------------------------------------------------------- |
|---|
| 511 | IGCM_debug_Verif_Exit_Post |
|---|
| 512 | |
|---|
| 513 | if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] || \ |
|---|
| 514 | [ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] || \ |
|---|
| 515 | [ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then |
|---|
| 516 | # |
|---|
| 517 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
|---|
| 518 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
|---|
| 519 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
|---|
| 520 | IGCM_sys_QsubPost atlas_LMDZ ; |
|---|
| 521 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
|---|
| 522 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
|---|
| 523 | Script_Post_Output=additionnal.${PeriodDateEnd} ; |
|---|
| 524 | IGCM_sys_QsubPost additionnal ; |
|---|
| 525 | # |
|---|
| 526 | elif [ ${config_UserChoices_TagName} = "IPSLCM5" ] || \ |
|---|
| 527 | [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || \ |
|---|
| 528 | [ ${config_UserChoices_TagName} = "IPSLCM5B" ] || \ |
|---|
| 529 | [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] ; then |
|---|
| 530 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
|---|
| 531 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
|---|
| 532 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
|---|
| 533 | IGCM_sys_QsubPost atlas_LMDZ ; |
|---|
| 534 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
|---|
| 535 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
|---|
| 536 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
|---|
| 537 | IGCM_sys_QsubPost atlas_PISCES ; |
|---|
| 538 | # |
|---|
| 539 | elif [ ${config_UserChoices_TagName} = "LMDZ4OR" ] || \ |
|---|
| 540 | [ ${config_UserChoices_TagName} = "LMDZOR" ] || \ |
|---|
| 541 | [ ${config_UserChoices_TagName} = "LMDZ4OR_v2" ] ; then |
|---|
| 542 | # |
|---|
| 543 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
|---|
| 544 | IGCM_sys_QsubPost atlas_LMDZ ; |
|---|
| 545 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
|---|
| 546 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
|---|
| 547 | # |
|---|
| 548 | elif [ ${config_UserChoices_TagName} = "LMDZ" ] ; then |
|---|
| 549 | # |
|---|
| 550 | Script_Post_Output=atlas_LDMZ.${PeriodDateEnd} ; |
|---|
| 551 | IGCM_sys_QsubPost atlas_LMDZ ; |
|---|
| 552 | # |
|---|
| 553 | elif [ ${config_UserChoices_TagName} = "OL" ] || \ |
|---|
| 554 | [ ${config_UserChoices_TagName} = "OL2" ] ; then |
|---|
| 555 | # |
|---|
| 556 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
|---|
| 557 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
|---|
| 558 | # |
|---|
| 559 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] || |
|---|
| 560 | [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] ; then |
|---|
| 561 | # |
|---|
| 562 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
|---|
| 563 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
|---|
| 564 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ; then |
|---|
| 565 | # |
|---|
| 566 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
|---|
| 567 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
|---|
| 568 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
|---|
| 569 | IGCM_sys_QsubPost atlas_PISCES ; |
|---|
| 570 | elif [ ${config_UserChoices_TagName} = "ORCA2_OFF_PISCES" ] ; then |
|---|
| 571 | # |
|---|
| 572 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
|---|
| 573 | IGCM_sys_QsubPost atlas_PISCES ; |
|---|
| 574 | # |
|---|
| 575 | fi |
|---|
| 576 | |
|---|
| 577 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
|---|
| 578 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
|---|
