source: tags/libIGCM_v2.0_rc1/AA_atlas_ORCA_LIM @ 1137

Last change on this file since 1137 was 741, checked in by sdipsl, 12 years ago
  • use xlarge class on curie
  • comment header tweaking for ensemble due to bas side effect
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.3 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_OPA        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_OPA        # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- curie #MSUB -q xlarge
20#-Q- curie #MSUB -Q normal
21#-Q- curie set +x
22#-Q- platine #!/usr/bin/ksh
23#-Q- platine ##################
24#-Q- platine ## PLATINE   CEA ##
25#-Q- platine ##################
26#-Q- platine #BSUB -J ATL_OPA           # Nom du job
27#-Q- platine #BSUB -N                   # message a la fin du job
28#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
29#-Q- platine #BSUB -W 1:00              # Limite temps
30#-Q- platine #BSUB -q post              # Passage en queue post
31#-Q- platine #BSUB -L /bin/ksh
32#-Q- sx8brodie #!/bin/ksh
33#-Q- sx8brodie #######################
34#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
35#-Q- sx8brodie #######################
36#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
37#-Q- sx8brodie # @ wall_clock_limit = 2:00:00
38#-Q- sx8brodie # Nom du travail LoadLeveler
39#-Q- sx8brodie # @ job_name   = ATL_OPA
40#-Q- sx8brodie # Fichier de sortie standard du travail       
41#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
42#-Q- sx8brodie # Fichier de sortie d'erreur du travail
43#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
44#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
45#-Q- sx8brodie # @ notification = error
46#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
47#-Q- sx8brodie # @ queue
48#-Q- aix6 #!/bin/ksh
49#-Q- aix6 #######################
50#-Q- aix6 ##   VARGAS   IDRIS  ##
51#-Q- aix6 #######################
52#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
53#-Q- aix6 # @ wall_clock_limit = 2:00:00
54#-Q- aix6 # Nom du travail LoadLeveler
55#-Q- aix6 # @ job_name   = ATL_OPA
56#-Q- aix6 # Fichier de sortie standard du travail       
57#-Q- aix6 # @ output     = $(job_name).$(jobid)
58#-Q- aix6 # Fichier de sortie d'erreur du travail
59#-Q- aix6 # @ error      =  $(job_name).$(jobid)
60#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
61#-Q- aix6 # @ notification = error
62#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
63#-Q- aix6 # @ queue
64#-Q- ulam #!/bin/ksh
65#-Q- ulam #######################
66#-Q- ulam ##   ULAM   IDRIS  ##
67#-Q- ulam #######################
68#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
69#-Q- ulam # @ wall_clock_limit = 2:00:00
70#-Q- ulam # Nom du travail LoadLeveler
71#-Q- ulam # @ job_name   = ATL_OPA
72#-Q- ulam # Fichier de sortie standard du travail       
73#-Q- ulam # @ output     = $(job_name).$(jobid)
74#-Q- ulam # Fichier de sortie d'erreur du travail
75#-Q- ulam # @ error      =  $(job_name).$(jobid)
76#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
77#-Q- ulam # @ notification = error
78#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
79#-Q- ulam # @ queue
80#-Q- sx8mercure #!/bin/ksh
81#-Q- sx8mercure ######################
82#-Q- sx8mercure ## SX8MERCURE   CEA ##
83#-Q- sx8mercure ######################
84#-Q- sx8mercure #PBS -N  ATL_OPA             # Nom du job
85#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
86#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
87#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
88#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
89#-Q- sx8mercure #PBS -q scalaire
90#-Q- sx8mercure #PBS -r n
91#-Q- sx9mercure #!/bin/ksh
92#-Q- sx9mercure ######################
93#-Q- sx9mercure ## SX9MERCURE  CCRT ##
94#-Q- sx9mercure ######################
95#-Q- sx9mercure #PBS -N  ATL_OPA             # Nom du job
96#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
97#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
98#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
99#-Q- sx9mercure #PBS -l elapstim_req=2:00:00   # Limite temps a 2 heures
100#-Q- sx9mercure #PBS -q scalaire
101#-Q- sx9mercure #PBS -r n
102#-Q- titane #!/bin/ksh
103#-Q- titane ######################
104#-Q- titane ## TITANE   CEA ##
105#-Q- titane ######################
106#-Q- titane #MSUB -r ATL_OPA        # Nom du job               
107#-Q- titane #MSUB -eo
108#-Q- titane #MSUB -n 1              # Reservation du processus
109#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
110#-Q- titane #MSUB -q mono
111#-Q- titane #MSUB -E '-rn'
112#-Q- default #!/bin/ksh
113#-Q- default ##################
114#-Q- default ## DEFAULT HOST ##
115#-Q- default ##################
116
117#**************************************************************
118# Author: Sebastien Denvil
119# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
120# $Revision::                                          $ Revision of last commit
121# $Author::                                            $ Author of last commit
122# $Date::                                              $ Date of last commit
123# IPSL (2006)
124#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
125#
126#**************************************************************
127
128#set -eu
129#set -vx
130
131date
132
133#-Q- sx8brodie export OMP_NUM_THREADS=1
134#-Q- aix6 export OMP_NUM_THREADS=1
135#-Q- ulam export OMP_NUM_THREADS=1
136
137#D- Task type (computing or post-processing)
138TaskType=post-processing
139
140########################################################################
141
142. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
143      ( ${DEBUG_debug} ) && IGCM_debug_Check
144. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
145     ( ${DEBUG_debug} ) && IGCM_card_Check
146. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
147     ( ${DEBUG_debug} ) && IGCM_date_Check
148#-------
149. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
150. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
151
152########################################################################
153
154#set -vx
155
156IGCM_sys_MkdirWork ${RUN_DIR_PATH}
157IGCM_sys_Cd ${RUN_DIR_PATH}
158
159# ------------------------------------------------------------------
160# Test if all was right before proceeding further
161# ------------------------------------------------------------------
162IGCM_debug_Verif_Exit_Post
163
164if [ ${StandAlone} = true ] ; then
165    CARD_DIR=${SUBMIT_DIR}
166else
167    CARD_DIR=${RUN_DIR_PATH}
168    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
169    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
170    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
171    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
172
173fi
174
175#==================================
176# First of all
177#
178# Read libIGCM compatibility version in config.card
179# Read UserChoices section
180# Read Ensemble section
181# Read Post section
182# Define all netcdf output directories
183#==================================
184IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
185
186#
187IGCM_sys_MkdirArchive ${R_FIGR}
188
189R_ATLAS=ATLAS/SE_${YEARS}
190R_OUT_OCE=${R_SAVE}/OCE
191R_OUT_ICE=${R_SAVE}/ICE
192DIR_OUT=${DIR_OUT:=SE}
193
194RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
195IGCM_sys_MkdirWork ${RUN_DIR}
196IGCM_sys_Cd ${RUN_DIR}
197
198# --------------------------------------------
199# Insert your commands between III...III lines
200# and precise produced directories to save
201# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
202
203IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
204IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
205IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
206IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
207IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
208
209atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
210atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
211atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
212#atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
213atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
214atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
215
216# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
217
218# Put ferret journal files together
219for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do 
220    echo -e "\n\n################################" ;
221    echo -e "$file\n" ; cat $file ;
222done  > ${R_ATLAS}/OCE_T/allferretscript.txt
223
224for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do 
225    echo -e "\n\n################################" ;
226    echo -e "$file\n" ; cat $file ;
227done  > ${R_ATLAS}/OCE_U/allferretscript.txt
228
229for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do 
230    echo -e "\n\n################################" ;
231    echo -e "$file\n" ; cat $file ;
232done  > ${R_ATLAS}/OCE_V/allferretscript.txt
233
234for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do 
235    echo -e "\n\n################################" ;
236    echo -e "$file\n" ; cat $file ;
237done  > ${R_ATLAS}/OCE/allferretscript.txt
238
239for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do 
240    echo -e "\n\n################################" ;
241    echo -e "$file\n" ; cat $file ;
242done  > ${R_ATLAS}/ICE/allferretscript.txt
243
244# WHILE WAITING FOR A MORE GENERIC SOLUTION
245if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
246    IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
247    atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
248    for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
249        echo -e "\n\n################################" ;
250        echo -e "$file\n" ; cat $file ;
251    done > ${R_ATLAS}/ZNL/allferretscript.txt
252fi
253
254# Clear some files
255find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
256
257# Save files
258IGCM_sys_Put_Dir ATLAS ${R_FIGR}
259
260IGCM_sys_Rm -Rf ATLAS
261IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
262IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc     
263# WHILE WAITING FOR A MORE GENERIC SOLUTION
264if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
265    IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
266fi
267
268# DODS copy
269IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
270[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
271
272# Clean RUN_DIR_PATH (necessary for cesium and titane only)
273IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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