source: tags/libIGCM_v2.0_rc1/AA_pack_debug

Last change on this file was 741, checked in by sdipsl, 12 years ago
  • use xlarge class on curie
  • comment header tweaking for ensemble due to bas side effect
  • Property svn:keywords set to Revision Author Date
File size: 13.6 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r PACKDEBUG    # Nom du job
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r PACKDEBUG      # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- curie #MSUB -q xlarge
20#-Q- curie #MSUB -Q normal
21#-Q- curie set +x
22#-Q- platine #!/usr/bin/ksh
23#-Q- platine ###################
24#-Q- platine ## PLATINE   CEA ##
25#-Q- platine ###################
26#-Q- platine #BSUB -J PACKDEBUG            # Nom du job
27#-Q- platine #BSUB -N                        # message a la fin du job
28#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
29#-Q- platine #BSUB -W 4:00                   # Limite temps
30#-Q- platine #BSUB -q post                   # Passage en queue post
31#-Q- platine #BSUB -L /bin/ksh
32#-Q- sx8brodie #!/bin/ksh
33#-Q- sx8brodie #######################
34#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
35#-Q- sx8brodie #######################
36#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
37#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
38#-Q- sx8brodie # Nom du travail LoadLeveler
39#-Q- sx8brodie # @ job_name   = PACKDEBUG
40#-Q- sx8brodie # Fichier de sortie standard du travail
41#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
42#-Q- sx8brodie # Fichier de sortie d'erreur du travail
43#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
44#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
45#-Q- sx8brodie # @ notification = error
46#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
47#-Q- sx8brodie # @ queue
48#-Q- aix6 #!/bin/ksh
49#-Q- aix6 #######################
50#-Q- aix6 ##   VARGAS   IDRIS  ##
51#-Q- aix6 #######################
52#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
53#-Q- aix6 # @ wall_clock_limit = 10:00:00
54#-Q- aix6 # Nom du travail LoadLeveler
55#-Q- aix6 # @ job_name   = PACKDEBUG
56#-Q- aix6 # Fichier de sortie standard du travail
57#-Q- aix6 # @ output     = $(job_name).$(jobid)
58#-Q- aix6 # Fichier de sortie d'erreur du travail
59#-Q- aix6 # @ error      =  $(job_name).$(jobid)
60#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
61#-Q- aix6 # @ notification = error
62#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
63#-Q- aix6 # @ queue
64#-Q- ulam #!/bin/ksh
65#-Q- ulam #######################
66#-Q- ulam ##   VARGAS   IDRIS  ##
67#-Q- ulam #######################
68#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
69#-Q- ulam # @ wall_clock_limit = 10:00:00
70#-Q- ulam # Nom du travail LoadLeveler
71#-Q- ulam # @ job_name   = PACKDEBUG
72#-Q- ulam # Fichier de sortie standard du travail
73#-Q- ulam # @ output     = $(job_name).$(jobid)
74#-Q- ulam # Fichier de sortie d'erreur du travail
75#-Q- ulam # @ error      =  $(job_name).$(jobid)
76#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
77#-Q- ulam # @ notification = error
78#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
79#-Q- ulam # @ queue
80#-Q- sx8mercure #!/bin/ksh
81#-Q- sx8mercure ######################
82#-Q- sx8mercure ## SX8MERCURE   CEA ##
83#-Q- sx8mercure ######################
84#-Q- sx8mercure #PBS -N PACKDEBUG          # Nom du job
85#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
86#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
87#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
88#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
89#-Q- sx8mercure #PBS -q scalaire
90#-Q- sx8mercure #PBS -r n
91#-Q- sx9mercure #!/bin/ksh
92#-Q- sx9mercure ######################
93#-Q- sx9mercure ## SX9MERCURE  CCRT ##
94#-Q- sx9mercure ######################
95#-Q- sx9mercure #PBS -N PACKDEBUG          # Nom du job
96#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
97#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
98#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
99#-Q- sx9mercure #PBS -l elapstim_req=24:00:00  # Limite temps a 1 heures
100#-Q- sx9mercure #PBS -q scalaire
101#-Q- sx9mercure #PBS -r n
102#-Q- titane #!/bin/ksh
103#-Q- titane ######################
104#-Q- titane ## TITANE   CEA     ##
105#-Q- titane ######################
106#-Q- titane #MSUB -r PACKDEBUG    # Nom du job
107#-Q- titane #MSUB -eo
108#-Q- titane #MSUB -n 1              # Reservation du processus
109#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
110#-Q- titane #MSUB -q mono
111#-Q- titane #MSUB -E '-rn'
112#-Q- lxiv8 ######################
113#-Q- lxiv8 ## OBELIX      LSCE ##
114#-Q- lxiv8 ######################
115#-Q- lxiv8 #PBS -N PACKDEBUG
116#-Q- lxiv8 #PBS -m a
117#-Q- lxiv8 #PBS -j oe
118#-Q- lxiv8 #PBS -q medium
119#-Q- lxiv8 #PBS -o PACKDEBUG.$$
120#-Q- lxiv8 #PBS -S /bin/ksh
121#-Q- default #!/bin/ksh
122#-Q- default ##################
123#-Q- default ## DEFAULT HOST ##
124#-Q- default ##################
125
126#**************************************************************
127# Author: Sebastien Denvil
128# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
129# $Revision::                                          $ Revision of last commit
130# $Author::                                            $ Author of last commit
131# $Date::                                              $ Date of last commit
132# IPSL (2006)
133#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
134#
135#**************************************************************
136
137#set -eu
138#set -vx
139
140date
141
142#D- Task type (computing or post-processing)
143TaskType=post-processing
144
145########################################################################
146
147#D- Flag to determine if this job in a standalone mode
148#D- Default : value from AA_job if any
149StandAlone=${StandAlone:=true}
150
151#D- Path to libIGCM
152#D- Default : value from AA_job if any
153# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
154# WARNING you must check MirrorlibIGCM variable in sys library.
155# WARNING If this variable is true, you must use libIGCM_POST path instead
156# WARNING of your running libIGCM directory.
157libIGCM=${libIGCM:=::modipsl::/libIGCM}
158
159#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
160MASTER=${MASTER:=mercure|titane|brodie|vargas}
161
162#D- Flag to determine begin date for restart pack
163#D- Default : value from AA_job if any
164DateBegin=${DateBegin:=20000101}
165
166#D- Flag to determine end date for restart pack
167#D- Default : value from AA_job if any
168DateEnd=${DateEnd:=20691231}
169
170#D- Flag to determine pack period
171#D- Default : value from AA_job if any
172PeriodPack=${PeriodPack:=10Y}
173
174#D- Uncomment to run interactively
175#D- For testing purpose, will be remove
176#SUBMIT_DIR=${PWD}
177#RUN_DIR_PATH=${SCRATCHDIR}/Pack_Test
178
179#D- Increased verbosity (1, 2, 3)
180#D- Default : value from AA_job if any
181Verbosity=${Verbosity:=3}
182
183#D- Low level debug : to bypass lib test checks and stack construction
184#D- Default : value from AA_job if any
185DEBUG_debug=${DEBUG_debug:=false}
186
187#D- Keep following comments for now. Will be remove.
188
189#on veut archiver les fichiers restart
190#Dans le cadre du demenagement ils seront renommes
191#ATM/Restart/****.nc
192#OCE/Restart/****.nc
193#...
194#sous la forme
195#RESTART/ATM_****.nc
196#RESTART/OCE_****.nc
197#Attention de bien conserver les dates d'origines
198#
199#Dans le cadre de la production nouvelle chaine
200#ils auront directement le bon nom
201#
202#On veut egalement que l'archive soit par periode de temps
203# cette periode est definie par la taille du pack donc connue
204# en entree du script (1M, 1Y, 5Y, 10Y etc...)
205#
206# $1= PATH/config_card d'une simulation avec
207# TagName/JobName/ExperimentName/SpaceName/DateBegin/DateEnd
208# $2=PeriodPack en M/m ou Y/y
209
210########################################################################
211
212. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
213( ${DEBUG_debug} ) && IGCM_debug_Check
214. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
215( ${DEBUG_debug} ) && IGCM_card_Check
216. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
217( ${DEBUG_debug} ) && IGCM_date_Check
218#-------
219. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
220. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
221. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
222
223########################################################################
224
225#set -vx
226
227RUN_DIR=${RUN_DIR_PATH}
228IGCM_sys_MkdirWork ${RUN_DIR}
229IGCM_sys_Cd ${RUN_DIR}
230
231# ------------------------------------------------------------------
232# Test if all was right before proceeding further
233# ------------------------------------------------------------------
234IGCM_debug_Verif_Exit_Post
235
236if [ ${StandAlone} = true ] ; then
237    CARD_DIR=${SUBMIT_DIR}
238else
239    CARD_DIR=${RUN_DIR_PATH}
240    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
241    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
242    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
243    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
244fi
245
246#==================================
247# First of all
248#
249# Read libIGCM compatibility version in config.card
250# Read UserChoices section
251# Read Ensemble section
252# Read Post section
253# Define all netcdf output directories
254#==================================
255IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
256
257IGCM_sys_TestDirArchive ${R_SAVE}
258[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
259
260#STORE_DEBUG=/ccc/store/cont003/dsm/p86denv/.../DEBUG
261STORE_DEBUG=${R_SAVE}/DEBUG
262IGCM_sys_MkdirArchive ${STORE_DEBUG}
263
264#cd ${STORE_DEBUG}
265#rm -f *
266
267# Switch to script variables meaning (try to be compatible with ipsl_pack TGCC moving procedure)
268JobName=${config_UserChoices_JobName}
269echo $JobName $DateBegin $DateEnd
270
271# Clear txt file lists
272rm -f ${RUN_DIR}/liste_debug_files.txt
273rm -f ${RUN_DIR}/liste_out_files.txt
274rm -f ${RUN_DIR}/new_liste_debug_files.txt
275rm -f ${RUN_DIR}/liste_pack_*.txt
276
277# Create sorted debug list to work with
278find ${R_BUFR}/*/Debug -type f | sort >> ${RUN_DIR}/liste_debug_files.txt
279
280# Rename debug files we will work with using symlinks. use ???_ prefix ie NF-2
281#gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("cp --preserve " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
282gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
283
284# Add out_ : output of execution files
285find ${R_BUFR}/Out -type f -name '*out_*' | sort >> ${RUN_DIR}/liste_out_files.txt
286
287# Rename out files we will work with using symlinks. use Out_ prefix ie NF-1
288gawk -F/ '{dest_name=$(NF-1)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_out_files.txt
289
290# List renamed debug files. Exclude Job_xxx files.
291find ${RUN_DIR} -maxdepth 1 -mindepth 1 -name "???_*${JobName}*" -ls | sort -k 11 > ${RUN_DIR}/new_liste_debug_files.txt
292
293# ------------------------------------------------------------------
294# Test if all was right before proceeding further
295# ------------------------------------------------------------------
296IGCM_debug_Verif_Exit_Post
297
298# Init loop
299date_begin_pack=${DateBegin}
300date_end_simulation=${DateEnd}
301number_pack=1
302
303IGCM_debug_PrintVariables 3 date_begin_pack
304IGCM_debug_PrintVariables 3 date_end_simulation
305
306while [ ${date_begin_pack} -le ${date_end_simulation} ] ; do
307
308  IGCM_debug_PrintVariables 3 number_pack
309
310  DaysTemp=$( IGCM_date_DaysInCurrentPeriod ${date_begin_pack} ${PeriodPack} )
311  date_end_pack=$( IGCM_date_AddDaysToGregorianDate ${date_begin_pack} $(( ${DaysTemp} - 1 )) )
312
313  for file in $( gawk '{print $11}' ${RUN_DIR}/new_liste_debug_files.txt ); do
314    extract_date_file=$( echo ${file}  | sed -e "s/.*${JobName}_[0-9]*_//" )
315    date_file=$( echo ${extract_date_file} | sed 's/\([0-9]\{8\}\)_.*$/\1/g' )
316#   echo pack n°${number_pack}  ${date_file} ${date_begin_pack} ${date_end_pack}
317    if [ ${date_file} -le ${date_end_pack} ] && [ ${date_file} -ge ${date_begin_pack} ] ; then
318        echo $( basename ${file} ) >> ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
319        echo $( readlink ${file} ) >> ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt
320#    Will not work. Need to find a better ordering.
321#    elif [ ${date_file} -ge ${date_end_pack} ] ; then
322#      break
323    fi
324  done
325
326  # Create tar files
327  IGCM_debug_Print 1 "Tar ongoing"
328  tar -cvf ${JobName}_${date_begin_pack}_${date_end_pack}_debug.tar --dereference --files-from ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
329  # Save it
330  IGCM_sys_Put_Out ${JobName}_${date_begin_pack}_${date_end_pack}_debug.tar ${STORE_DEBUG}
331  # Clean it
332  IGCM_sys_Rm ${JobName}_${date_begin_pack}_${date_end_pack}_debug.tar
333  # Clean links
334  cat ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
335  # Clean files links pointed to
336  cat ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
337  # Save the list of files that has been pack (tar)
338  #mv ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt ${STORE_DEBUG}
339  IGCM_debug_Print 1 "Tar and cleaning done"
340
341  (( number_pack = number_pack + 1 ))
342
343  # Add 1 day to date_end_pack to have the new date_begin_pack
344  date_begin_pack=$( IGCM_date_AddDaysToGregorianDate ${date_end_pack} 1 )
345
346done
347
348# Clean RUN_DIR_PATH (necessary for cesium and titane only)
349IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
350
351date
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