source: tags/libIGCM_v2.0_rc1/libIGCM_sys/libIGCM_sys_curie.ksh @ 1137

Last change on this file since 1137 was 748, checked in by sdipsl, 12 years ago
  • correct a typo. Do not affect running simulations
  • Property svn:keywords set to Revision Author Date
File size: 72.2 KB
Line 
1#!/bin/ksh
2
3#**************************************************************
4# Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel
5# Contact: Arnaud.Caubel__at__lsce.ipsl.fr
6# $Revision::                                          $ Revision of last commit
7# $Author::                                            $ Author of last commit
8# $Date::                                              $ Date of last commit
9# IPSL (2006)
10#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11#
12#**************************************************************
13
14#=========================================================
15# The documentation of this file can be automatically generated
16# if you use the prefix #D- for comments to be extracted.
17# Extract with command: cat lib* | grep "^#D-" | cut -c "4-"
18#=========================================================
19
20#D-#==================================================
21#D-LibIGCM_sys for Curie
22#D-#==================================================
23#D-
24#D- This ksh library if a layer under some usefull
25#D-environment variables and shell commands.
26#D-All those definitions depend on host particularities.
27#D-It manages a stack mechanism and test validity of operations.
28#D-All function described bellow must be prefixed by IGCM_sys.
29
30#====================================================
31# libIGCM_sys PARAMETERS
32#====================================================
33
34#====================================================
35# set DEBUG_sys to true to output calls of function
36typeset -r DEBUG_sys=${DEBUG_sys:=true}
37
38#====================================================
39# Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get)
40typeset -r DRYRUN=${DRYRUN:=0}
41
42# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
43# -------------------------------------------------------------------------------------
44# | DRYRUN=  |  Date computations, | sys_Get    |  Exe    | sys_Put_Out; sys_Put_Rest |
45# |          |  Cp/Exe param files |            |  Chmod  |                           |
46# |          |      Qsub           |            |         |                           |
47# -------------------------------------------------------------------------------------
48# |    0     |       yes           |    yes     |  yes    |      yes                  |
49# -------------------------------------------------------------------------------------
50# |    1     |       yes           |    yes     |  yes    |      no                   |
51# -------------------------------------------------------------------------------------
52# |    2     |       yes           |    yes     |  no     |      no                   |
53# -------------------------------------------------------------------------------------
54# |    3     |       yes           |    no      |  no     |      no                   |
55# -------------------------------------------------------------------------------------
56
57#=====================================================
58# Global Variables :
59#=====================================================
60# Language : "fr" or "en"
61typeset -r MYLANG="fr"
62
63#=====================================================
64# Host and user names
65# $hostname ou hostname
66typeset  HOST=${HOST:=$( hostname )}
67# $username ou whoami
68typeset  LOGIN=${LOGIN:=$( whoami )}
69# $hostname of the MASTER job
70typeset MASTER=curie
71
72#D-
73#D-#==================================================
74#D-Program used in libIGCM
75#D-#==================================================
76
77# Submit command
78typeset SUBMIT=${SUBMIT:=ccc_msub}
79# rsync with path
80typeset -r RSYNC=/usr/bin/rsync
81# RSYNC_opt args to rsync
82typeset -r RSYNC_opt="-va"
83# ie storage filesystem
84typeset -r STOREHOST=${MASTER}
85
86#====================================================
87# Source default environment
88#====================================================
89##. /etc/profile
90
91#====================================================
92# Set environment tools (ferret, nco, cdo)
93#====================================================
94if [ X${TaskType} = Xcomputing ] ; then
95  . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_calcul_curie_ksh
96  export PATH=${PATH}:/ccc/cont003/home/dsm/p86ipsl/AddNoise/src_X64/bin
97else
98  . /ccc/cont003/home/dsm/p86ipsl/.atlas_env_post_curie_ksh
99fi
100
101#====================================================
102# Specific for ocean additionnal diagnostic
103export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO"
104export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET"
105
106#====================================================
107# Host specific DIRECTORIES
108#====================================================
109
110# ============ CESIUM START ============ #
111
112#====================================================
113#- Mirror libIGCM from titane to cesium if needed
114#ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' )
115#if [ ! ${ROOTSYS} = "home" ] ; then
116#  typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true}
117#else
118#  typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
119#fi
120
121#====================================================
122#- libIGCM_POST
123#if ( ${MirrorlibIGCM} ) ; then
124#  PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" )
125#  typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM
126#else
127#  typeset -r libIGCM_POST=${libIGCM}
128#fi
129
130# ============ CESIUM  END  ============ #
131
132#====================================================
133#- MirrorlibIGCM for frontend
134typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false}
135
136#====================================================
137#- libIGCM_POST for frontend
138typeset -r libIGCM_POST=${libIGCM}
139
140#====================================================
141#- R_EXE   (==> BIN_DIR = ${MODIPSL}/bin )
142typeset -r R_EXE="${MODIPSL}/bin"
143
144#====================================================
145#- SUBMIT_DIR : submission dir
146typeset SUBMIT_DIR=${SUBMIT_DIR:=${BRIDGE_MSUB_PWD}}
147
148#====================================================
149#- IN
150typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM}
151typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data}
152
153#====================================================
154#- ARCHIVE (dedicated to large files)
155typeset ARCHIVE=${CCCSTOREDIR}
156
157#====================================================
158#- STORAGE (dedicated to small/medium files)
159typeset STORAGE=${CCCWORKDIR}
160
161#====================================================
162#- R_OUT
163typeset R_OUT=${ARCHIVE}/IGCM_OUT
164
165#====================================================
166#- R_FIG (hosting figures : monitoring and atlas, and/or small files)
167typeset R_FIG=${STORAGE}/IGCM_OUT
168
169#====================================================
170#- R_BUF (ONLY FOR double copy an scratch)
171typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT
172
173#====================================================
174#- BIG_DIR : BIG_DIR to store files waiting for rebuild
175typeset -r BIG_DIR=${BIG_DIR:=${SCRATCHDIR}/REBUILD}
176
177#====================================================
178#- OUT_POST
179typeset -r R_OUT_POST=${SCRATCHDIR}/IGCM_OUT
180
181#====================================================
182#- RUN_DIR_PATH : Temporary working directory (=> TMP)
183if [ X${TaskType} = Xcomputing ] ; then
184  typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${BRIDGE_MSUB_JOBID}}
185else
186  typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${BRIDGE_MSUB_JOBID}}
187fi
188
189#====================================================
190#- HOST_MPIRUN_COMMAND
191typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="/usr/bin/time ccc_mprun"}
192
193#====================================================
194#- Max number of arguments passed to nco operator or demigration command
195UNIX_MAX_LIMIT=360
196
197#====================================================
198#- set PackDefault true on curie
199PackDefault=true
200
201#====================================================
202#- Number of core per node (max number of OpenMP task)
203NUM_COREPERNODE=8
204
205#====================================================
206#- Default number of MPI task for IPSL coupled model
207#- required for backward compatibility
208#-
209DEFAULT_NUM_PROC_OCE=5
210DEFAULT_NUM_PROC_CPL=1
211(( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL ))
212DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT}
213
214#D-#==================================================
215#D-function IGCM_sys_ChangeArchive
216#D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR
217#D-* Examples:
218#D-
219function IGCM_sys_ChangeArchive {
220  IGCM_debug_PushStack "IGCM_sys_ChangeArchive"
221
222  R_OUT=${SCRATCHDIR}/IGCM_OUT
223  R_FIG=${SCRATCHDIR}/IGCM_OUT
224
225  IGCM_debug_Print 1 "R_OUT   has been redefined = ${R_OUT}"
226  IGCM_debug_Print 1 "R_FIG   has been redefined = ${R_FIG}"
227
228  IGCM_debug_PopStack "IGCM_sys_ChangeArchive"
229}
230
231#D-#==================================================
232#D-function IGCM_sys_RshMaster
233#D-* Purpose: Connection to frontend machine.
234#D-* Examples:
235#D-
236function IGCM_sys_RshMaster {
237  IGCM_debug_PushStack "IGCM_sys_RshMaster" $@
238  /bin/ksh <<-EOF
239    export libIGCM=${libIGCM}
240    export DEBUG_debug=${DEBUG_debug}
241    . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
242    . ${libIGCM}/libIGCM_card/libIGCM_card.ksh
243    ${@}
244EOF
245  if [ $? -gt 0 ] ; then
246    echo "IGCM_sys_RshMaster : erreur."
247    IGCM_debug_Exit "IGCM_sys_RshMaster"
248  fi
249  IGCM_debug_PopStack "IGCM_sys_RshMaster"
250}
251
252#D-#==================================================
253#D-function IGCM_sys_RshArchive
254#D-* Purpose: Archive rsh command
255#D-* Examples:
256#D-
257function IGCM_sys_RshArchive {
258  IGCM_debug_PushStack "IGCM_sys_RshArchive" $@
259  /bin/ksh <<-EOF
260    ${@}
261EOF
262  if [ $? -gt 0 ] ; then
263    echo "IGCM_sys_RshArchive : erreur."
264    IGCM_debug_Exit "IGCM_sys_RshArchive"
265  fi
266  IGCM_debug_PopStack "IGCM_sys_RshArchive"
267}
268
269#D-#==================================================
270#D-function IGCM_sys_RshPost
271#D-* Purpose: Post-process rsh command
272#D-* Examples:
273#D-
274function IGCM_sys_RshPost {
275  IGCM_debug_PushStack "IGCM_sys_RshPost" $@
276  if ( $DEBUG_sys ) ; then
277    echo "IGCM_sys_RshPost :" $@
278  fi
279
280  #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL
281  #cat tmp_IGCM_sys_RshPost_$$
282  # keep standard input (stdin) for the loop onto temporary file
283  cat >tmp_IGCM_sys_RshPost_$$
284
285# ============ FRONTEND START ============ #
286
287  /bin/ksh <tmp_IGCM_sys_RshPost_$$
288  if [ $? -gt 0 ] ; then
289    echo "IGCM_sys_RshPost : erreur."
290    IGCM_debug_Exit "IGCM_sys_RshPost"
291  fi
292  # delete temporary file
293  \rm tmp_IGCM_sys_RshPost_$$
294
295# ============ FRONTEND  END  ============ #
296
297# ============ CESIUM START ============ #
298#  typeset NB_ESSAI DELAI status i
299#  if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then
300#    #little hack so that rebuild submission is done on titane not an cesium
301#
302#    libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' )
303#    POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' )
304#    sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
305#    sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$
306#    sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt
307#    sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$
308#    \mv tmp.txt tmp_IGCM_sys_RshPost_$$
309#
310#    echo cat tmp_IGCM_sys_RshPost_$$ AFTER
311#    cat tmp_IGCM_sys_RshPost_$$
312#
313#    /bin/ksh <tmp_IGCM_sys_RshPost_$$
314#    if [ $? -gt 0 ] ; then
315#      echo "IGCM_sys_RshPost : erreur."
316#      IGCM_debug_Exit "IGCM_sys_RshPost"
317#    fi
318#    # delete temporary file
319#    \rm tmp_IGCM_sys_RshPost_$$
320#
321#  else
322#    # number of tentative
323#    NB_ESSAI=10
324#    # time delay between tentative
325#    DELAI=10
326#    i=0
327#    while [ $i -ne $NB_ESSAI ] ; do
328#      ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$
329#      status=$?
330#      if [ ${status} -ne 0 ];
331#      then
332#       sleep $DELAI
333#      else
334#       break
335#      fi
336#      let i=$i+1
337#    done
338#    # delete temporary file
339#    \rm tmp_IGCM_sys_RshPost_$$
340#
341#    if [ ${status} -gt 0 ] ; then
342#      echo "IGCM_sys_RshPost : erreur."
343#      IGCM_debug_Exit "IGCM_sys_RshPost"
344#    fi
345#  fi
346
347# ============ CESIUM  END  ============ #
348
349  IGCM_debug_PopStack "IGCM_sys_RshPost"
350}
351
352#D-#==================================================
353#D-function IGCM_sys_SendMail
354#D-* Purpose: Send mail when simulation is over
355#D-* Examples:
356#D-
357function IGCM_sys_SendMail {
358  IGCM_debug_PushStack "IGCM_sys_SendMail" $@
359  if ( $DEBUG_sys ) ; then
360    echo "IGCM_sys_SendMail :" $@
361  fi
362
363  if ( ${ExitFlag} ) ; then
364    status=failed
365  else
366    status=completed
367  fi
368
369  cat  << END_MAIL > job_end.mail
370Dear ${LOGIN},
371
372  Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`.
373  Job started : ${DateBegin}
374  Job ended   : ${DateEnd}
375  Output files are available in ${R_SAVE}
376  Files to be rebuild are temporarily available in ${REBUILD_DIR}
377  Pre-packed files are temporarily available in ${R_BUFR}
378  Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR}
379END_MAIL
380
381    if [ ! -z ${config_UserChoices_MailName} ] ; then
382        mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail
383    elif [ -f ~/.forward ] ; then
384        mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail
385    fi
386    sleep 10
387    rm -f job_end.mail
388
389  if [ $? -gt 0 ] ; then
390    echo "IGCM_sys_SendMail : erreur."
391    IGCM_debug_Exit "IGCM_sys_SendMail"
392  fi
393  IGCM_debug_PopStack "IGCM_sys_SendMail"
394}
395
396#D-#==================================================
397#D-function IGCM_sys_Mkdir
398#D-* Purpose: Master locale mkdir command
399#D-* Examples:
400#D-
401function IGCM_sys_Mkdir {
402  IGCM_debug_PushStack "IGCM_sys_Mkdir" $@
403  if ( $DEBUG_sys ) ; then
404    echo "IGCM_sys_Mkdir :" $@
405  fi
406  if [ ! -d ${1} ]; then
407    \mkdir -p $1
408    if [ $? -gt 0 ] ; then
409      echo "IGCM_sys_Mkdir : erreur."
410      IGCM_debug_Exit "IGCM_sys_Mkdir"
411    fi
412  fi
413  # vérification :
414  if [ ! -d ${1} ] ; then
415    echo "IGCM_sys_Mkdir : erreur."
416    IGCM_debug_Exit "IGCM_sys_Mkdir"
417  fi
418  IGCM_debug_PopStack "IGCM_sys_Mkdir"
419}
420
421#D-#==================================================
422#D-function IGCM_sys_MkdirArchive
423#D-* Purpose: Mkdir on Archive
424#D-* Examples:
425#D-
426function IGCM_sys_MkdirArchive {
427  IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@
428  if ( $DEBUG_sys ) ; then
429    echo "IGCM_sys_MkdirArchive :" $@
430  fi
431  #- creation de repertoire sur le serveur fichier
432  if [ ! -d ${1} ]; then
433    \mkdir -p $1
434    if [ $? -gt 0 ] ; then
435      echo "IGCM_sys_MkdirArchive : erreur."
436      IGCM_debug_Exit "IGCM_sys_MkdirArchive"
437    fi
438  fi
439  IGCM_debug_PopStack "IGCM_sys_MkdirArchive"
440}
441
442#D-#==================================================
443#D-function IGCM_sys_MkdirWork
444#D-* Purpose: Mkdir on Work
445#D-* Examples:
446#D-
447function IGCM_sys_MkdirWork {
448  IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@
449  if ( $DEBUG_sys ) ; then
450    echo "IGCM_sys_MkdirWork :" $@
451  fi
452  #- creation de repertoire sur le serveur fichier
453  if [ ! -d ${1} ]; then
454    \mkdir -p $1
455    if [ $? -gt 0 ] ; then
456      echo "IGCM_sys_MkdirWork : erreur."
457      IGCM_debug_Exit "IGCM_sys_MkdirWork"
458    fi
459  fi
460  IGCM_debug_PopStack "IGCM_sys_MkdirWork"
461}
462
463#D-#==================================================
464#D-function IGCM_sys_Cd
465#D-* Purpose: master cd command
466#D-* Examples:
467#D-
468function IGCM_sys_Cd {
469  IGCM_debug_PushStack "IGCM_sys_Cd" $@
470  if ( $DEBUG_sys ) ; then
471    echo "IGCM_sys_Cd :" $@
472  fi
473  \cd $1
474  if [ $? -gt 0 ] ; then
475    echo "IGCM_sys_Cd : erreur."
476    IGCM_debug_Exit "IGCM_sys_Cd"
477  fi
478  IGCM_debug_PopStack "IGCM_sys_Cd"
479}
480
481#D-#==================================================
482#D-function IGCM_sys_Chmod
483#D-* Purpose: Chmod
484#D-* Examples:
485#D-
486function IGCM_sys_Chmod {
487  IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@
488  if ( $DEBUG_sys ) ; then
489    echo "IGCM_sys_Chmod :" $@
490  fi
491  if [ $DRYRUN -le 1 ]; then
492    \chmod $@
493    if [ $? -gt 0 ] ; then
494      echo "IGCM_sys_Chmod : erreur."
495      IGCM_debug_Exit "IGCM_sys_Chmod"
496    fi
497  else
498    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
499  fi
500  IGCM_debug_PopStack "IGCM_sys_Chmod"
501}
502
503#D-#==================================================
504#D-function IGCM_sys_FileSize
505#D-* Purpose: Filesize
506#D-* Examples:
507#D-
508function IGCM_sys_FileSize {
509  IGCM_debug_PushStack "IGCM_sys_FileSize" $@
510
511  typeset sizeF
512  set +A sizeF -- $( ls -la ${1} )
513  if [ $? -gt 0 ] ; then
514    IGCM_debug_Exit "IGCM_sys_FileSize"
515  fi
516  eval ${2}=${sizeF[4]}
517
518  IGCM_debug_PopStack "IGCM_sys_FileSize"
519}
520
521#D-#==================================================
522#D-function IGCM_sys_TestDir
523#D-* Purpose: Test Directory that must exists
524#D-* Examples:
525#D-
526function IGCM_sys_TestDir {
527  IGCM_debug_PushStack "IGCM_sys_TestDir" $@
528  if ( $DEBUG_sys ) ; then
529    echo "IGCM_sys_TestDir :" $@
530  fi
531  typeset ExistFlag
532  ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 )
533  IGCM_debug_PopStack "IGCM_sys_TestDir"
534
535  return ${ExistFlag}
536}
537
538#D-#==================================================
539#D-function IGCM_sys_TestDirArchive
540#D-* Purpose: Test Directory that must exists on Archive
541#D-* Examples:
542#D-
543function IGCM_sys_TestDirArchive {
544  IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@
545  if ( $DEBUG_sys ) ; then
546    echo "IGCM_sys_TestDirArchive :" $@
547  fi
548  typeset ExistFlag
549  ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 )
550  IGCM_debug_PopStack "IGCM_sys_TestDirArchive"
551
552  return ${ExistFlag}
553}
554
555#D-#==================================================
556#D-function IGCM_sys_IsFileArchived
557#D-* Purpose: Test file that must NOT EXISTS on Archive
558#D-* Examples:
559#D-
560function IGCM_sys_IsFileArchived {
561  IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@
562  if ( $DEBUG_sys ) ; then
563    echo "IGCM_sys_IsFileArchived :" $@
564  fi
565  typeset IsArchivedFlag
566  IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 )
567  IGCM_debug_PopStack "IGCM_sys_IsFileArchived"
568
569  return ${IsArchivedFlag}
570}
571
572#D-#==================================================
573#D-function IGCM_sys_TestFileArchive
574#D-* Purpose: Test file that must NOT EXISTS on Archive
575#D-* Examples:
576#D-
577function IGCM_sys_TestFileArchive {
578  IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@
579  typeset ExistFlag
580  ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 )
581  IGCM_debug_PopStack "IGCM_sys_TestFileArchive"
582
583  return ${ExistFlag}
584}
585
586#D-#==================================================
587#D-function IGCM_sys_TestFileBuffer
588#D-* Purpose: Test file that must NOT EXISTS on Buffer
589#D-* Examples:
590#D-
591function IGCM_sys_TestFileBuffer {
592  IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@
593  typeset ExistFlag
594  ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 )
595  IGCM_debug_PopStack "IGCM_sys_TestFileBuffer"
596
597  return ${ExistFlag}
598}
599
600#D-#==================================================
601#D-function IGCM_sys_CountFileArchive
602#D-* Purpose: Count files on Archive filesystem
603#D-* Examples:
604#D-
605function IGCM_sys_CountFileArchive {
606  IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@
607  ls ${@} 2>/dev/null | wc -l
608  if [ $? -gt 0 ] ; then
609    echo "IGCM_sys_CountFileArchive : erreur."
610  fi
611  IGCM_debug_PopStack "IGCM_sys_CountFileArchive"
612}
613
614#D-#==================================================
615#D-function IGCM_sys_CountFileBuffer
616#D-* Purpose: Count files on Scratch filesystem
617#D-* Examples:
618#D-
619function IGCM_sys_CountFileBuffer {
620  IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@
621  ls ${@} 2>/dev/null | wc -l
622  if [ $? -gt 0 ] ; then
623    echo "IGCM_sys_CountFileBuffer : erreur."
624  fi
625  IGCM_debug_PopStack "IGCM_sys_CountFileBuffer"
626}
627
628#D-#==================================================
629#D-function IGCM_sys_Tree
630#D-* Purpose: Tree directories with files on ${ARCHIVE}
631#D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT}
632#D-
633function IGCM_sys_Tree {
634  IGCM_debug_PushStack "IGCM_sys_Tree" $@
635  if ( $DEBUG_sys ) ; then
636    echo "IGCM_sys_Tree :" $@
637  fi
638
639  \ls -lR ${@}
640
641  IGCM_debug_PopStack "IGCM_sys_Tree"
642}
643
644#D-#==================================================
645#D-function IGCM_sys_Tar
646#D-* Purpose: master tar command
647#D-* Examples:
648#D-
649function IGCM_sys_Tar {
650  IGCM_debug_PushStack "IGCM_sys_Tar" $@
651  if ( $DEBUG_sys ) ; then
652    echo "IGCM_sys_Tar :" $@
653  fi
654  \tar cf $@
655  if [ $? -gt 0 ] ; then
656    echo "IGCM_sys_Tar : erreur."
657    IGCM_debug_Exit "IGCM_sys_Tar"
658  fi
659  IGCM_debug_PopStack "IGCM_sys_Tar"
660}
661
662#D-#==================================================
663#D-function IGCM_sys_UnTar
664#D-* Purpose: master un-tar command
665#D-* Examples:
666#D-
667function IGCM_sys_UnTar {
668  IGCM_debug_PushStack "IGCM_sys_UnTar" $@
669  if ( $DEBUG_sys ) ; then
670    echo "IGCM_sys_UnTar :" $@
671  fi
672  \tar xvf $1
673  if [ $? -gt 0 ] ; then
674    echo "IGCM_sys_UnTar : erreur."
675    IGCM_debug_Exit "IGCM_sys_UnTar"
676  fi
677  IGCM_debug_PopStack "IGCM_sys_UnTar"
678}
679
680#D-#==================================================
681#D-function IGCM_sys_Qsub
682#D-* Purpose: Qsub new job
683#D-* Examples:
684#D-
685function IGCM_sys_Qsub {
686  IGCM_debug_PushStack "IGCM_sys_Qsub" $@
687  if ( $DEBUG_sys ) ; then
688    echo "IGCM_sys_Qsub :" $@
689  fi
690  typeset options
691  if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then
692    options=" -o ${Script_Output} -e ${Script_Output}"
693  else
694    options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}"
695  fi
696
697  /usr/bin/ccc_msub ${options} < $1
698  if [ $? -gt 0 ] ; then
699    echo "IGCM_sys_Qsub : erreur ${options} $1"
700    IGCM_debug_Exit "IGCM_sys_Qsub"
701  fi
702  IGCM_debug_PopStack "IGCM_sys_Qsub"
703}
704
705#D-#==================================================
706#D-function IGCM_sys_QsubPost
707#D-* Purpose: Qsub new job on scalaire
708#D-* Examples:
709#D-
710function IGCM_sys_QsubPost {
711  IGCM_debug_PushStack "IGCM_sys_QsubPost" $@
712  if ( $DEBUG_sys ) ; then
713    echo "IGCM_sys_QsubPost :" $@
714  fi
715  /usr/bin/ccc_msub -Q normal -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job
716  if [ $? -gt 0 ] ; then
717    echo "IGCM_sys_QsubPost : erreur " $@
718    IGCM_debug_Exit "IGCM_sys_QsubPost"
719  fi
720  IGCM_debug_PopStack "IGCM_sys_QsubPost"
721}
722
723#D-*************************
724#D- File transfer functions
725#D-*************************
726#D-
727
728#D-#==================================================
729#D-function IGCM_sys_Rsync_out
730#D-* Purpose: treat return val of rsync
731#D-* Examples: IGCM_sys_Rsync_out out_RET_rsync
732#D-  Error values and explanations can depend on your system version.
733function IGCM_sys_Rsync_out {
734  status=$1
735  if [ ! $status ] ; then
736    echo "rsync error !"
737  fi
738
739  if [ $MYLANG = "fr" ]; then
740    case $status in
741    0)  return ;;
742    1)  echo "Erreur de rsync ; RERR_SYNTAX : "
743      echo "Erreur de syntaxe ou d'utilisation."
744      return;;
745    2)  echo "Erreur de rsync ; RERR_PROTOCOL : "
746      echo "Incompatibilité de protocole."
747      return;;
748    3)  echo "Erreur de rsync ; RERR_FILESELECT 3"
749      echo "Erreurs  lors  de  la  sélection des fichiers d'entrée sortie et"
750      echo "répertoires"
751      return;;
752    4)  echo "Erreur de rsync ; RERR_UNSUPPORTED"
753      echo "Action demandée non supportée : une tentative de manipulation de"
754      echo "fichiers  64-bits  sur une plate-forme qui ne les supporte pas a"
755      echo "été faite ; ou une option qui est supportée par le  client  mais"
756      echo "pas par le serveur a été spécifiée."
757      return;;
758    10) echo "Erreur de rsync ; RERR_SOCKETIO"
759      echo "Erreur dans le socket d'entrée sortie"
760      return;;
761    11) echo "Erreur de rsync ; RERR_FILEIO"
762      echo "Erreur d'entrée sortie fichier"
763      return;;
764    12) echo "Erreur de rsync ; RERR_STREAMIO"
765      echo "Erreur dans flux de donnée du protocole rsync"
766      return;;
767    13) echo "Erreur de rsync ; RERR_MESSAGEIO"
768      echo "Erreur avec les diagnostics du programme"
769      return;;
770    14) echo "Erreur de rsync ; RERR_IPC"
771      echo "Erreur dans le code IPC"
772      return;;
773    20) echo "Erreur de rsync ; RERR_SIGNAL"
774      echo "SIGUSR1 ou SIGINT reçu"
775      return;;
776    21) echo "Erreur de rsync ; RERR_WAITCHILD"
777      echo "Une erreur retournée par waitpid()"
778      return;;
779    22) echo "Erreur de rsync ; RERR_MALLOC"
780      echo "Erreur lors de l'allocation des tampons de mémoire de coeur"
781      return;;
782    23) echo ""
783      echo "Erreur fichier inexistant"
784      return;;
785    30) echo "Erreur de rsync ; RERR_TIMEOUT"
786      echo "Temps d'attente écoulé dans l'envoi/réception de données"
787      return;;
788    *)  echo "Erreur de rsync : code de retour de rsync inconnu :" $status
789      return;;
790    esac
791  elif [ $MYLANG = "en" ] ; then
792    case $status in
793    0)  return;;
794    1)  echo "rsync error : Syntax or usage error "
795      return;;
796    2)  echo "rsync error : Protocol incompatibility "
797      return;;
798    3)  echo "rsync error : Errors selecting input/output files, dirs"
799      return;;
800    4)  echo "rsync error : Requested action not supported: an attempt"
801      echo "was made to manipulate 64-bit files on a platform that cannot support"
802      echo "them; or an option was specified that is supported by the client and"
803      echo "not by the server."
804      return;;
805    5)  echo "rsync error : Error starting client-server protocol"
806      return;;
807    10) echo "rsync error : Error in socket I/O "
808      return;;
809    11) echo "rsync error : Error in file I/O "
810      return;;
811    12) echo "rsync error : Error in rsync protocol data stream "
812      return;;
813    13) echo "rsync error : Errors with program diagnostics "
814      return;;
815    14) echo "rsync error : Error in IPC code "
816      return;;
817    20) echo "rsync error : Received SIGUSR1 or SIGINT "
818      return;;
819    21) echo "rsync error : Some error returned by waitpid() "
820      return;;
821    22) echo "rsync error : Error allocating core memory buffers "
822      return;;
823    23) echo "rsync error : Partial transfer due to error"
824      return;;
825    24) echo "rsync error : Partial transfer due to vanished source files"
826      return;;
827    30) echo "rsync error : Timeout in data send/receive "
828      return;;
829    *)  echo "rsync error : return code of rsync unknown :" $status
830      return;;
831    esac
832  else
833    echo "unknown language $MYLANG."
834    return
835  fi
836}
837
838#D-#==================================================
839#D-function IGCM_sys_Miror_libIGCM
840#D-* Purpose: Mirror libIGCM PATH and lib to cesium
841#D-* Examples:
842#D-
843function IGCM_sys_Mirror_libIGCM {
844  IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM"
845  if ( $DEBUG_sys ) ; then
846    echo "IGCM_sys_Mirror_libIGCM"
847  fi
848
849  typeset status DEST
850
851  mkdir -p ${HOME}/MIRROR/${PATHlibIGCM}
852
853  echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1
854  ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1
855  status=$?
856
857  if [ ${status} -gt 0 ] ; then
858    echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium."
859    cat out_rsync
860  fi
861  IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM"
862}
863
864#D-#==================================================
865#D-function IGCM_sys_Cp
866#D-* Purpose: generic cp
867#D-* Examples:
868#D-
869function IGCM_sys_Cp {
870  IGCM_debug_PushStack "IGCM_sys_Cp" $@
871  if ( $DEBUG_sys ) ; then
872    echo "IGCM_sys_Cp :" $@
873  fi
874
875  typeset status
876
877  echo cp $@ > out_rsync 2>&1
878  \cp $@ >> out_rsync 2>&1
879  status=$?
880
881  if [ ${status} -gt 0 ] ; then
882    echo "IGCM_sys_Cp : error code ${status}"
883    cat out_rsync
884    IGCM_debug_Exit "IGCM_sys_Cp"
885  else
886    \rm out_rsync
887  fi
888  IGCM_debug_PopStack "IGCM_sys_Cp"
889}
890
891#D-#==================================================
892#D-function IGCM_sys_Rm
893#D-* Purpose: generic rm
894#D-* Examples:
895#D-
896function IGCM_sys_Rm {
897  IGCM_debug_PushStack "IGCM_sys_Rm" -- $@
898  if ( $DEBUG_sys ) ; then
899    echo "IGCM_sys_Rm :" $@
900  fi
901
902  typeset status
903
904  echo rm $@ > out_rsync 2>&1
905  \rm $@ >> out_rsync 2>&1
906  status=$?
907
908  if [ ${status} -gt 0 ] ; then
909    echo "IGCM_sys_Rm : error code ${status}"
910    cat out_rsync
911    IGCM_debug_Exit "IGCM_sys_Rm"
912  else
913    \rm out_rsync
914  fi
915  IGCM_debug_PopStack "IGCM_sys_Rm"
916}
917
918#D-#==================================================
919#D-function IGCM_sys_RmRunDir
920#D-* Purpose: rm tmpdir (dummy function most of the time batch
921#D-                      scheduler will do the job)
922#D-* Examples:
923#D-
924function IGCM_sys_RmRunDir {
925  IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@
926  if ( $DEBUG_sys ) ; then
927    echo "IGCM_sys_RmRunDir :" $@
928  fi
929
930  typeset status
931
932  echo rm $@ > out_rsync 2>&1
933  \rm $@ >> out_rsync 2>&1
934  status=$?
935
936  if [ ${status} -gt 0 ] ; then
937    echo "IGCM_sys_RmRunDir : error code ${status}"
938    cat out_rsync
939    IGCM_debug_Exit "IGCM_sys_RmRunDir"
940  else
941    \rm out_rsync
942  fi
943  IGCM_debug_PopStack "IGCM_sys_RmRunDir"
944}
945
946#D-#==================================================
947#D-function IGCM_sys_Mv
948#D-* Purpose: generic move
949#D-* Examples:
950#D-
951function IGCM_sys_Mv {
952  IGCM_debug_PushStack "IGCM_sys_Mv" $@
953  if ( $DEBUG_sys ) ; then
954    echo "IGCM_sys_Mv :" $@
955  fi
956
957  if [ $DRYRUN = 0 ]; then
958
959    typeset status
960
961    echo mv $@ > out_rsync 2>&1
962    \mv $@ >> out_rsync 2>&1
963    status=$?
964
965    if [ ${status} -gt 0 ] ; then
966      echo "IGCM_sys_Mv : error code ${status}"
967      cat out_rsync
968      IGCM_debug_Exit "IGCM_sys_Mv"
969    else
970      \rm out_rsync
971    fi
972  else
973    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
974  fi
975
976  IGCM_debug_PopStack "IGCM_sys_Mv"
977}
978
979#D-#==================================================
980#D-function IGCM_sys_Put_Dir
981#D-* Purpose: Copy a complete directory on $(ARCHIVE)
982#D-* Examples:
983#D-
984function IGCM_sys_Put_Dir {
985  IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@
986  if ( $DEBUG_sys ) ; then
987    echo "IGCM_sys_Put_Dir :" $@
988  fi
989  if [ $DRYRUN = 0 ]; then
990    if [ ! -d ${1} ] ; then
991      echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ."
992      IGCM_debug_PopStack "IGCM_sys_Put_Dir"
993      return
994    fi
995
996    typeset status
997
998    # Only if we use rsync
999    #IGCM_sys_TestDirArchive $( dirname $2 )
1000    #
1001    #USUAL WAY
1002    \cp -r $1 $2 > out_rsync 2>&1
1003    status=$?
1004
1005    if [ ${status} -gt 0 ] ; then
1006      echo "IGCM_sys_Put_Dir : error code ${status}"
1007      cat out_rsync
1008      IGCM_debug_Exit "IGCM_sys_Put_Dir"
1009    else
1010      \rm out_rsync
1011    fi
1012  else
1013    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1014  fi
1015  IGCM_debug_PopStack "IGCM_sys_Put_Dir"
1016}
1017
1018#D-#==================================================
1019#D-function IGCM_sys_Get_Dir
1020#D-* Purpose: Copy a complete directory from ${ARCHIVE}
1021#D-* Examples:
1022#D-
1023function IGCM_sys_Get_Dir {
1024  IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@
1025  if ( $DEBUG_sys ) ; then
1026    echo "IGCM_sys_Get_Dir :" $@
1027  fi
1028  if [ $DRYRUN = 0 ]; then
1029#    if [ ! -d ${1} ] ; then
1030#      echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ."
1031#      IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1032#      return
1033#    fi
1034
1035    typeset NB_ESSAI DELAI status i
1036    # number of tentative
1037    NB_ESSAI=3
1038    # time delay between tentative
1039    DELAI=2
1040
1041    # Only if we use rsync
1042    #IGCM_sys_TestDirArchive $( dirname $2 )
1043    #
1044    # USUAL WAY
1045    # add 'ccc_hsm get' (to demigrate all offline files) to reduce time of this command :
1046    ccc_hsm get -r $1
1047
1048    i=0
1049    while [ $i -lt $NB_ESSAI ] ; do
1050      \cp -ur $1 $2 >> out_rsync 2>&1
1051      status=$?
1052      if [ ${status} -gt 0 ]; then
1053        IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}"
1054        IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again."
1055        sleep $DELAI
1056      else
1057        break
1058      fi
1059      (( i = i + 1 ))
1060    done
1061
1062    if [ ${status} -gt 0 ] ; then
1063      echo "IGCM_sys_Get_Dir : error."
1064      cat out_rsync
1065      IGCM_debug_Exit "IGCM_sys_Get_Dir"
1066    else
1067      \rm out_rsync
1068    fi
1069  else
1070    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1071  fi
1072  IGCM_debug_PopStack "IGCM_sys_Get_Dir"
1073}
1074
1075#D-#==================================================
1076#D-function IGCM_sys_Get_Master
1077#D-* Purpose: Copy a complete directory from MASTER filesystem
1078#D-* Examples:
1079#D-
1080function IGCM_sys_Get_Master {
1081  IGCM_debug_PushStack "IGCM_sys_Get_Master" $@
1082  if ( $DEBUG_sys ) ; then
1083    echo "IGCM_sys_Get_Master :" $@
1084  fi
1085  if [ $DRYRUN = 0 ]; then
1086    if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then
1087      echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ."
1088      IGCM_debug_PopStack "IGCM_sys_Get_Master"
1089      return
1090    fi
1091
1092    typeset NB_ESSAI DELAI status i
1093    # number of tentative
1094    NB_ESSAI=3
1095    # time delay between tentative
1096    DELAI=2
1097
1098    i=0
1099    while [ $i -lt $NB_ESSAI ] ; do
1100      \cp -urL $1 $2 > out_rsync 2>&1
1101      status=$?
1102      if [ ${status} -gt 0 ]; then
1103        IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}"
1104        IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again."
1105        sleep $DELAI
1106      else
1107        break
1108      fi
1109      (( i = i + 1 ))
1110    done
1111
1112    if [ ${status} -gt 0 ] ; then
1113      echo "IGCM_sys_Get_Master : error."
1114      cat out_rsync
1115      IGCM_debug_Exit "IGCM_sys_Get_Master"
1116    else
1117      \rm out_rsync
1118    fi
1119  else
1120    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1121  fi
1122  IGCM_debug_PopStack "IGCM_sys_Get_Master"
1123}
1124
1125#====================================================
1126#- Call IGCM_sys_Mirror_libIGCM now !
1127if ( $MirrorlibIGCM ) ; then
1128  IGCM_sys_Mirror_libIGCM
1129fi
1130
1131#D-#==================================================
1132#D-function IGCM_sys_Put_Rest
1133#D-* Purpose: Put computied restarts on ${ARCHIVE}.
1134#D-           File and target directory must exist.
1135#D-* Examples:
1136#D-
1137function IGCM_sys_Put_Rest {
1138  IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@
1139  if ( $DEBUG_sys ) ; then
1140    echo "IGCM_sys_Put_Rest :" $@
1141  fi
1142  if [ $DRYRUN = 0 ]; then
1143    if [ ! -f ${1} ] ; then
1144      echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ."
1145      IGCM_debug_Exit "IGCM_sys_Put_Rest"
1146    fi
1147
1148    typeset status
1149    #
1150    if [ X${JobType} = XRUN ] ; then
1151      IGCM_sys_Chmod 444 ${1}
1152    fi
1153
1154    #
1155    # USUAL WAY
1156    \cp $1 $2 > out_rsync 2>&1
1157    status=$?
1158
1159#       #RSYNC WITH NETWORK SSH CALL
1160#       echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1161#       ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1162
1163#       #RSYNC WITH NFS USE
1164#       echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1165#       ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1166
1167#       status=$?
1168#       IGCM_sys_Rsync_out $status
1169
1170#       ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1171#       (( status=status+$? ))
1172
1173    if [ ${status} -gt 0 ] ; then
1174      echo "IGCM_sys_Put_Rest : cp failed error code ${status}"
1175      cat out_rsync
1176      IGCM_debug_Exit "IGCM_sys_Put_Rest"
1177    else
1178      \rm out_rsync
1179    fi
1180  else
1181    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1182  fi
1183  IGCM_debug_PopStack "IGCM_sys_Put_Rest"
1184}
1185
1186#D-#==================================================
1187#D-function IGCM_sys_PutBuffer_Rest
1188#D-* Purpose: Put computied restarts on ${SCRATCHDIR}.
1189#D-           File and target directory must exist.
1190#D-* Examples:
1191#D-
1192function IGCM_sys_PutBuffer_Rest {
1193  IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@
1194  if ( $DEBUG_sys ) ; then
1195    echo "IGCM_sys_PutBuffer_Rest :" $@
1196  fi
1197  if [ $DRYRUN = 0 ]; then
1198    if [ ! -f ${1} ] ; then
1199      echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ."
1200      IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1201    fi
1202
1203    typeset status
1204    #
1205    if [ X${JobType} = XRUN ] ; then
1206      IGCM_sys_Chmod 444 ${1}
1207    fi
1208
1209    #
1210    # USUAL WAY
1211    \cp $1 $2 > out_rsync 2>&1
1212    status=$?
1213
1214    if [ ${status} -gt 0 ] ; then
1215      echo "IGCM_sys_PutBuffer_Rest : error code ${status}"
1216      cat out_rsync
1217      IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest"
1218    else
1219      \rm out_rsync
1220    fi
1221  else
1222    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1223  fi
1224  IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest"
1225}
1226
1227#D-#==================================================
1228#D-function IGCM_sys_Put_Out
1229#D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly
1230#D-* Examples:
1231#D-
1232function IGCM_sys_Put_Out {
1233  IGCM_debug_PushStack "IGCM_sys_Put_Out" $@
1234  if ( $DEBUG_sys ) ; then
1235    echo "IGCM_sys_Put_Out :" $@
1236  fi
1237
1238  typeset NB_ESSAI DELAI status i exist skip
1239
1240  # number of tentative
1241  NB_ESSAI=3
1242  # time delay between tentative
1243  DELAI=2
1244
1245  if [ $DRYRUN = 0 ]; then
1246    if [ ! -f ${1} ] ; then
1247      echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ."
1248      IGCM_debug_PopStack "IGCM_sys_Put_Out"
1249      return 1
1250    fi
1251    #
1252    IGCM_sys_MkdirArchive $( dirname $2 )
1253    #
1254
1255    #=====================================================
1256    #         COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1257    #=====================================================
1258
1259    #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1
1260    #if [ $? -eq 0 ] ; then
1261    #    typeset WORKPATH FILEPATH
1262    #    WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" )
1263    #    IGCM_sys_MkdirWork ${WORKPATH}
1264    #    FILEPATH=${WORKPATH}/$( basename $2 )
1265    #    #
1266    #    IGCM_sys_Cp ${1} ${FILEPATH}
1267    #fi
1268
1269    if [ X${JobType} = XRUN ] ; then
1270      if [ X${3} = X ] ; then
1271        IGCM_sys_Chmod 444 ${1}
1272      fi
1273    fi
1274    #
1275
1276    exist=false
1277    skip=false
1278    if [ -f $2 ] ; then
1279      IGCM_debug_Print 1 "$2 already exist"
1280      #dmget $2
1281      ccc_hsm get $2
1282      exist=true
1283      if [ "X$( diff $1 $2 )" = X ] ; then
1284        IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1285        skip=true
1286      else
1287        IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1288        skip=false
1289      fi
1290    fi
1291    #
1292    if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1293      IGCM_sys_Chmod u+w $2
1294    fi
1295
1296    if [ X${skip} = Xfalse ] ; then
1297      i=0
1298      while [ $i -lt $NB_ESSAI ] ; do
1299        # USUAL WAY
1300        \cp $1 $2 > out_rsync 2>&1
1301        status=$?
1302        if [ ${status} -gt 0 ]; then
1303          IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1304          IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again."
1305          sleep $DELAI
1306        else
1307          break
1308        fi
1309        (( i = i + 1 ))
1310      done
1311    fi
1312
1313#       #RSYNC WITH NETWORK SSH CALL
1314#       echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1
1315#       ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1
1316
1317#       #RSYNC WITH NFS USE
1318#       echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1
1319#       ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1
1320
1321#       status=$?
1322#       IGCM_sys_Rsync_out $status
1323
1324#       ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1325#       (( status=status+$? ))
1326
1327    if [ ${status} -gt 0 ] ; then
1328      echo "IGCM_sys_Put_Out : error."
1329      cat out_rsync
1330      IGCM_debug_Exit "IGCM_sys_Put_Out"
1331    else
1332      \rm out_rsync
1333    fi
1334  else
1335    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1336  fi
1337  IGCM_debug_PopStack "IGCM_sys_Put_Out"
1338  return 0
1339}
1340
1341#D-#==================================================
1342#D-function IGCM_sys_PutBuffer_Out
1343#D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly
1344#D-* Examples:
1345#D-
1346function IGCM_sys_PutBuffer_Out {
1347  IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@
1348  if ( $DEBUG_sys ) ; then
1349    echo "IGCM_sys_PutBuffer_Out :" $@
1350  fi
1351
1352  typeset NB_ESSAI DELAI status i exist skip
1353
1354  # number of tentative
1355  NB_ESSAI=3
1356  # time delay between tentative
1357  DELAI=2
1358
1359  if [ $DRYRUN = 0 ]; then
1360    if [ ! -f ${1} ] ; then
1361      echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ."
1362      IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1363      return 1
1364    fi
1365    #
1366    IGCM_sys_Mkdir $( dirname $2 )
1367    #
1368
1369    if [ X${JobType} = XRUN ] ; then
1370      if [ X${3} = X ] ; then
1371        IGCM_sys_Chmod 444 ${1}
1372      fi
1373    fi
1374
1375    exist=false
1376    skip=false
1377    if [ -f $2 ] ; then
1378      IGCM_debug_Print 1 "$2 already exist"
1379      exist=true
1380      if [ "X$( diff $1 $2 )" = X ] ; then
1381        IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy"
1382        skip=true
1383      else
1384        IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy"
1385        skip=false
1386      fi
1387    fi
1388    #
1389    if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then
1390      IGCM_sys_Chmod u+w $2
1391    fi
1392
1393    if [ X${skip} = Xfalse ] ; then
1394      i=0
1395      while [ $i -lt $NB_ESSAI ] ; do
1396        # USUAL WAY
1397        \cp $1 $2 > out_rsync 2>&1
1398        status=$?
1399        if [ ${status} -gt 0 ]; then
1400          IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}"
1401          IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again."
1402          sleep $DELAI
1403        else
1404          break
1405        fi
1406        (( i = i + 1 ))
1407      done
1408    fi
1409
1410    if [ ${status} -gt 0 ] ; then
1411      echo "IGCM_sys_PutBuffer_Out : error."
1412      cat out_rsync
1413      IGCM_debug_Exit "IGCM_sys_PutBuffer_Out"
1414    else
1415      \rm out_rsync
1416    fi
1417  else
1418    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1419  fi
1420  IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out"
1421  return 0
1422}
1423
1424#D-#==================================================
1425#D-function IGCM_sys_Get
1426#D-* Purpose: Get a file from ${ARCHIVE}
1427#D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX
1428#D-            IGCM_sys_Get /l Array_contain_myfiles /destpath/
1429function IGCM_sys_Get {
1430  IGCM_debug_PushStack "IGCM_sys_Get" $@
1431
1432  typeset DEST dm_liste ifile target file_work
1433  typeset NB_ESSAI DELAI status i
1434
1435  if ( $DEBUG_sys ) ; then
1436    echo "IGCM_sys_Get :" $@
1437  fi
1438
1439  # number of tentative
1440  NB_ESSAI=3
1441  # time delay between tentative
1442  DELAI=2
1443
1444  if [ $DRYRUN -le 2 ]; then
1445    if [ X${1} = X'/l' ] ; then
1446      # test if the first file is present in the old computation :
1447      eval set +A dm_liste \${${2}}
1448    else
1449      eval set +A dm_liste ${1}
1450    fi
1451    eval DEST=\${${#}}
1452
1453    #=====================================================
1454    #         COMMENT OUT DOUBLE COPY ON SCRATCHDIR
1455    #=====================================================
1456
1457    # Is it an R_OUT file (not R_IN) ?
1458    #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1
1459    #if [ $? -eq 0 ] ; then
1460    #    # Yes  ? then we try to get it in SCRATCHDIR
1461    #    set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" )
1462    #    if [ -f ${file_work[0]} ] ; then
1463    #   IGCM_sys_Cp ${file_work[*]} ${DEST}
1464    #   IGCM_debug_PopStack "IGCM_sys_Get"
1465    #   return
1466    #    fi
1467    #fi
1468
1469    ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1470    status=$?
1471    if [ ${status} -gt 0 ] ; then
1472      echo "WARNING IGCM_sys_Get : error code ${status}"
1473      cat out_rsync
1474      echo "WARNING IGCM_sys_Get : will stop later if the cp fails."
1475    fi
1476
1477    #if [ ${status} -gt 0 ] ; then
1478    #    if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then
1479    #   cat out_rsync
1480    #   echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : "
1481    #   sleep 30
1482    #   echo "We try another time"
1483    ##  dmget ${dm_liste[*]} > out_rsync 2>&1
1484    #   ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1
1485    #   status=$?
1486    #   if [ ${status} -gt 0 ] ; then
1487    #       echo "ERROR IGCM_sys_Get : again demigration error :"
1488    #       cat out_rsync
1489    #       IGCM_debug_Exit "IGCM_sys_Get"
1490    #   fi
1491    #    else
1492    #   echo "ERROR IGCM_sys_Get : demigration error :"
1493    #   cat out_rsync
1494    #   IGCM_debug_Exit "IGCM_sys_Get"
1495    #    fi
1496    #fi
1497
1498    #   #RSYNC WITH NETWORK SSH CALL
1499    #   echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1
1500    #   ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1
1501
1502    #   #RSYNC WITH NFS USE
1503    #   echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1
1504    #   ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1
1505
1506    #   status=$?
1507    #   IGCM_sys_Rsync_out $status
1508
1509    #   ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync
1510    #   (( status=status+$? ))
1511
1512    #USUAL WAY
1513    if [ X${1} = X'/l' ] ; then
1514      for target in ${dm_liste[*]} ; do
1515        local_file=$( basename ${target} )
1516        # test if the target file is present before the loop
1517        IGCM_sys_TestFileArchive ${target}
1518        status=$?
1519        if [ ${status} -gt 0 ] ; then
1520          echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ."
1521          IGCM_debug_Exit "IGCM_sys_Get"
1522        else
1523          i=0
1524          while [ $i -lt $NB_ESSAI ] ; do
1525            \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1526            status=$?
1527            if [ ${status} -gt 0 ]; then
1528              IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1529              IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1530              sleep $DELAI
1531            else
1532              break
1533            fi
1534            (( i = i + 1 ))
1535          done
1536          if [ ${status} -gt 0 ] ; then
1537            echo "IGCM_sys_Get : error"
1538            cat out_rsync
1539            \rm out_rsync
1540            IGCM_debug_Exit "IGCM_sys_Get"
1541          else
1542            \rm out_rsync
1543          fi
1544        fi
1545      done
1546    else
1547      i=0
1548      while [ $i -lt $NB_ESSAI ] ; do
1549        \cp ${dm_liste} ${DEST} >> out_rsync 2>&1
1550        status=$?
1551        if [ ${status} -gt 0 ]; then
1552          IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}"
1553          IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again."
1554          sleep $DELAI
1555        else
1556          break
1557        fi
1558        (( i = i + 1 ))
1559      done
1560      if [ ${status} -gt 0 ] ; then
1561        echo "IGCM_sys_Get : error"
1562        cat out_rsync
1563        \rm out_rsync
1564        IGCM_debug_Exit "IGCM_sys_Get"
1565      else
1566        \rm out_rsync
1567      fi
1568    fi
1569  else
1570    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1571  fi
1572  IGCM_debug_PopStack "IGCM_sys_Get"
1573}
1574
1575#D-#==================================================
1576#D-function IGCM_sys_GetBuffer
1577#D-* Purpose: Get a file from ${SCRATCHDIR}
1578#D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX
1579#D-            IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/
1580function IGCM_sys_GetBuffer {
1581  IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@
1582
1583  typeset DEST buf_liste ifile target file_work
1584  typeset NB_ESSAI DELAI status i
1585
1586  if ( $DEBUG_sys ) ; then
1587    echo "IGCM_sys_GetBuffer :" $@
1588  fi
1589
1590  # number of tentative
1591  NB_ESSAI=3
1592  # time delay between tentative
1593  DELAI=2
1594
1595  if [ $DRYRUN -le 2 ]; then
1596    if [ X${1} = X'/l' ] ; then
1597      # test if the first file is present in the old computation :
1598      eval set +A buf_liste \${${2}}
1599    else
1600      eval set +A buf_liste ${1}
1601    fi
1602    eval DEST=\${${#}}
1603
1604    #USUAL WAY
1605    if [ X${1} = X'/l' ] ; then
1606      for target in ${buf_liste[*]} ; do
1607        local_file=$( basename ${target} )
1608        i=0
1609        while [ $i -lt $NB_ESSAI ] ; do
1610          \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1
1611          status=$?
1612          if [ ${status} -gt 0 ]; then
1613            IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1614            IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1615            sleep $DELAI
1616          else
1617            break
1618          fi
1619          (( i = i + 1 ))
1620        done
1621        if [ ${status} -gt 0 ] ; then
1622          echo "IGCM_sys_Get : error"
1623          cat out_rsync
1624          \rm out_rsync
1625          IGCM_debug_Exit "IGCM_sys_GetBuffer"
1626        else
1627          \rm out_rsync
1628        fi
1629      done
1630    else
1631      i=0
1632      while [ $i -lt $NB_ESSAI ] ; do
1633        \cp ${buf_liste} ${DEST} >> out_rsync 2>&1
1634        status=$?
1635        if [ ${status} -gt 0 ]; then
1636          IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}"
1637          IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again."
1638          sleep $DELAI
1639        else
1640          break
1641        fi
1642        (( i = i + 1 ))
1643      done
1644      if [ ${status} -gt 0 ] ; then
1645        echo "IGCM_sys_Get : error"
1646        cat out_rsync
1647        \rm out_rsync
1648        IGCM_debug_Exit "IGCM_sys_GetBuffer"
1649      else
1650        \rm out_rsync
1651      fi
1652    fi
1653  else
1654    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1655  fi
1656  IGCM_debug_PopStack "IGCM_sys_GetBuffer"
1657}
1658
1659#D-#==================================================
1660#D-function IGCM_sys_GetDate_FichWork
1661#D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK
1662#D-* Examples:
1663#D-
1664function IGCM_sys_GetDate_FichWork {
1665  IGCM_debug_PushStack "IGCM_sys_FichWork" $@
1666  if ( $DEBUG_sys ) ; then
1667    echo "IGCM_sys_GetDate_FichWork :" $@
1668  fi
1669  typeset dateF
1670  set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1671  eval ${2}=${dateF[5]}
1672
1673    # donne la date filesys d'un fichier sur la machine work
1674  IGCM_debug_PopStack "IGCM_sys_FichWork"
1675}
1676
1677#D-#==================================================
1678#D-function IGCM_sys_GetDate_FichArchive
1679#D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE
1680#D-* Examples:
1681#D-
1682function IGCM_sys_GetDate_FichArchive {
1683  IGCM_debug_PushStack "IGCM_sys_FichArchive" $@
1684  if ( $DEBUG_sys ) ; then
1685    echo "IGCM_sys_GetDate_FichArchive :" $@
1686  fi
1687  typeset dateF
1688  set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} )
1689  eval ${2}=${dateF[5]}
1690
1691  IGCM_debug_PopStack "IGCM_sys_FichArchive"
1692}
1693
1694#D-#==================================================
1695#D-function IGCM_sys_Dods_Rm
1696#D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole.
1697#D-* Examples:
1698#D-
1699function IGCM_sys_Dods_Rm {
1700  if ( $DEBUG_sys ) ; then
1701    echo "IGCM_sys_Dods_Rm :" $@
1702  fi
1703  typeset status
1704  if [ $DRYRUN = 0 ]; then
1705
1706#    if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then
1707#      echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ."
1708#      echo "Nothing has been done."
1709#      return
1710#    fi
1711
1712    /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1
1713    status=$?
1714
1715#       if [ ${status} -gt 0 ] ; then
1716#           echo "IGCM_sys_Dods_Rm : error."
1717#           cat out_dods_rm
1718#           IGCM_debug_Exit "IGCM_sys_Dods_Rm"
1719#       else
1720#           rm out_dods_rm
1721#       fi
1722
1723  else
1724    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1725  fi
1726  return $status
1727}
1728
1729#D-#==================================================
1730#D-function IGCM_sys_Dods_Cp
1731#D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole.
1732#D-* Examples:
1733#D-
1734function IGCM_sys_Dods_Cp {
1735  if ( $DEBUG_sys ) ; then
1736    echo "IGCM_sys_Dods_Cp :" $@
1737  fi
1738  typeset status
1739  if [ $DRYRUN = 0 ]; then
1740
1741#    if [ ! -d ${R_SAVE}/${1} ] ; then
1742#      echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ."
1743#      echo "Nothing has been done."
1744#      return
1745#    fi
1746
1747    /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1
1748    status=$?
1749
1750#       if [ ${status} -gt 0 ] ; then
1751#           echo "IGCM_sys_Dods_Cp : error."
1752#           cat out_dods_cp
1753#           IGCM_debug_Exit "IGCM_sys_Dods_Cp"
1754#       else
1755#           rm out_dods_cp
1756#       fi
1757
1758  else
1759    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1760  fi
1761  return $status
1762}
1763
1764#D-#==================================================
1765#D-function IGCM_sys_Put_Dods
1766#D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole.
1767#D-* Examples:
1768#D-
1769function IGCM_sys_Put_Dods {
1770  IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@
1771  if ( $DEBUG_sys ) ; then
1772    echo "IGCM_sys_Put_Dods :" $@
1773  fi
1774  #set -vx
1775  typeset status
1776  if [ $DRYRUN = 0 ]; then
1777    if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then
1778      echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should."
1779      echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST."
1780      echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST."
1781      IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1782      return
1783    fi
1784
1785    if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then
1786      echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should."
1787      echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS."
1788      echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS."
1789      IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1790      return
1791    fi
1792    #
1793    if [ -d ${R_SAVE}/${1} ] ; then
1794      cd ${R_SAVE}
1795    elif [ -d ${R_FIGR}/${1} ] ; then
1796      cd ${R_FIGR}
1797    fi
1798
1799    IGCM_sys_Dods_Rm ${1}
1800    IGCM_sys_Dods_Cp ${1}
1801    status=0
1802
1803    if [ ${status} -gt 0 ] ; then
1804      echo "IGCM_sys_Put_Dods : error."
1805      IGCM_debug_Exit "IGCM_sys_Put_Dods"
1806    fi
1807  else
1808    ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack
1809  fi
1810  IGCM_debug_PopStack "IGCM_sys_Put_Dods"
1811}
1812
1813##############################################################
1814# REBUILD OPERATOR
1815
1816function IGCM_sys_rebuild {
1817  IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@
1818  if ( $DEBUG_sys ) ; then
1819    echo "IGCM_sys_rebuild :" $@
1820  fi
1821
1822  typeset NB_ESSAI DELAI status i firstArg
1823  # number of tentative
1824  NB_ESSAI=3
1825  # time delay between tentative
1826  DELAI=2
1827
1828  i=0
1829  while [ $i -lt $NB_ESSAI ] ; do
1830    ~p86ipsl/CESIUM/bin/rebuild -f -o $@ > out_rsync 2>&1
1831    status=$?
1832    if [ ${status} -gt 0 ] ; then
1833      IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}"
1834      cat out_rsync
1835      \rm out_rsync
1836      IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
1837      firstArg=${1}
1838      \rm ${firstArg}
1839      sleep $DELAI
1840    else
1841      \rm out_rsync
1842      break
1843    fi
1844    (( i = i + 1 ))
1845  done
1846
1847  if [ ${status} -gt 0 ] ; then
1848    echo "IGCM_sys_rebuild : rebuild error"
1849    IGCM_debug_Exit "rebuild"
1850  fi
1851
1852  IGCM_debug_PopStack "IGCM_sys_rebuild"
1853}
1854
1855function IGCM_sys_rebuild_station {
1856  IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@
1857  typeset i list_opt file_in file_out prefix_invert list_invert
1858  if ( $DEBUG_sys ) ; then
1859    echo "IGCM_sys_rebuild_station :" $@
1860  fi
1861  list_opt=$@
1862
1863  # Invert Axis : t,x -> x,t
1864  #               t,pres,x -> x,t,pres
1865  # So that we can concatenate along x
1866  i=0
1867  for file_in in ${list_opt} ; do
1868    (( i = i + 1))
1869    [ ${i} = 1 ] && file_out=${file_in} && continue
1870    prefix_invert=$( basename ${file_in} .nc )
1871    IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc
1872    list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc
1873  done
1874
1875  # Concatenate
1876  IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc
1877
1878  # Re-ivert file
1879  IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out}
1880
1881  # Station re-ordering is too expansive to be run within libICGM
1882  # This is due to (ncpdq - nrcat - ncpdq) I/O sequence.
1883  # This re-ordering must be done "in memory" by the cmorization process
1884  # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq)
1885  # BEGIN reordering
1886
1887  # Only LMDZ text output contains the exact ordering of the station.
1888  # We isolate this in the code below:
1889  #  0  38  -157.5000000000000  70.98591549295774
1890  #  0  54  27.49999999999999   67.18309859154928
1891  #  0  56  -62.50000000000001  82.39436619718309
1892  #  0  79  12.49999999999999   78.59154929577466
1893  #  0  116 -165.0000000000000  76.05633802816901
1894  #  0  117 130.0000000000000   70.98591549295774
1895  #  0  118 110.0000000000000   87.46478873239437
1896  #  1  40  4.999999999999995   51.97183098591550
1897#  typeset iStation iProc list_opt file_in file_out prefix_invert
1898#  typeset -Z4 j4
1899#  typeset -Z3 j3
1900
1901#  unset list_opt
1902#  set +A list_opt $@
1903
1904  # Filename after rebuild
1905#  file_out=${list_opt[0]}
1906  # Prefix of output files
1907#  prefix_invert=$( basename ${file_out} .nc )
1908  # Number of procs
1909#  num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l )
1910
1911#  iProc=0
1912#  while [ ${iProc} -lt ${num_proc} ] ; do
1913    # Array containing Station as a number
1914#    unset proc_stn
1915#    set +A proc_stn $( grep "iophy_mpi rank ip lon lat  $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' )
1916    # Number of stations produced by processor proc
1917#    stationLast=${#proc_stn[*]}
1918    # Proc number on 4 digits
1919#    j4=${iProc}
1920    # Init
1921#    iStation=0
1922#    while [ ${iStation} -lt ${stationLast} ] ; do
1923      # Station number on 3 digits
1924#      j3=${proc_stn[${iStation}]}
1925      # Extract station
1926      # Invert Axis : t,x -> x,t
1927      #               t,pres,x -> x,t,pres
1928      # So that we can concatenate along x
1929#      IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc
1930#      (( iStation = iStation + 1 ))
1931#    done
1932#    (( iProc = iProc + 1 ))
1933#  done
1934
1935  # Concatenate all station along x
1936#  IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc
1937
1938  # Re-invert file
1939#  IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out}
1940
1941  # END reordering
1942
1943  IGCM_debug_PopStack "IGCM_sys_rebuild_station"
1944}
1945
1946############################################################
1947# Activate Running Environnment Variables
1948
1949function IGCM_sys_activ_variables {
1950  IGCM_debug_PushStack "IGCM_sys_activ_variables"
1951  if ( $DEBUG_sys ) ; then
1952    echo "IGCM_sys_activ_variables"
1953  fi
1954
1955  ulimit -s unlimited
1956
1957  IGCM_debug_PopStack "IGCM_sys_activ_variables"
1958}
1959
1960############################################################
1961# Desactivate Running Environnment Variables
1962
1963function IGCM_sys_desactiv_variables {
1964  IGCM_debug_PushStack "IGCM_sys_desactiv_variables"
1965  if ( $DEBUG_sys ) ; then
1966    echo "IGCM_sys_desactiv_variables"
1967  fi
1968  IGCM_debug_PopStack "IGCM_sys_desactiv_variables"
1969}
1970
1971############################################################
1972# Build MPI/OMP scripts run file (dummy function)
1973
1974function IGCM_sys_build_run_file {
1975
1976IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file "
1977
1978}
1979
1980############################################################
1981# Build MPI/OMP scripts
1982function IGCM_sys_build_execution_scripts
1983{
1984  IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@
1985  if ( $DEBUG_sys ) ; then
1986    echo "IGCM_sys_build_execution_scripts " $@
1987  fi
1988
1989    # Verification with MSUB parameter
1990  EXECUTION=${HOST_MPIRUN_COMMAND}
1991
1992  if ( ${OK_PARA_MPMD} ) ; then
1993
1994    if [ -f run_file ] ; then
1995      IGCM_sys_Rm -f run_file
1996    fi
1997    touch run_file
1998
1999# run_file construction
2000
2001# Then first loop on the components for the coupler ie oasis
2002
2003### the coupler ie oasis must be the first one
2004    for comp in ${config_ListOfComponents[*]} ; do
2005
2006      eval ExeNameIn=\${config_Executable_${comp}[0]}
2007      eval ExeNameOut=\${config_Executable_${comp}[1]}
2008
2009        # for CPL component only
2010      if [ "X${comp}" = "XCPL" ] ; then
2011
2012        eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2013        eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2014        echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2015      fi
2016    done
2017
2018# Then second loop on the components
2019
2020    for comp in ${config_ListOfComponents[*]} ; do
2021
2022      eval ExeNameIn=\${config_Executable_${comp}[0]}
2023      eval ExeNameOut=\${config_Executable_${comp}[1]}
2024
2025        # Only if we really have an executable for the component and not the coupler ie oasis:
2026      if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then
2027
2028        eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2029        eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2030        echo "${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file
2031      fi
2032    done
2033
2034    EXECUTION="${HOST_MPIRUN_COMMAND} -f ./run_file"
2035
2036    IGCM_sys_Chmod u+x run_file
2037    if ( $DEBUG_sys ) ; then
2038      echo "run_file contains : "
2039      cat run_file
2040    fi
2041
2042  else # Only one executable. launch it.
2043
2044    #
2045    for comp in ${config_ListOfComponents[*]} ; do
2046
2047      # Only if we really have an executable for the component :
2048      eval ExeNameOut=\${config_Executable_${comp}[1]}
2049      if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then
2050
2051        echo "#!/bin/ksh" > script_${ExeNameOut}.ksh
2052        echo ""  >> script_${ExeNameOut}.ksh
2053        IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh
2054
2055        if ( ${OK_PARA_OMP} ) ; then
2056          eval comp_proc_omp_loc=\${${comp}_PROC_OMP}
2057          echo ""  >> script_${ExeNameOut}.ksh
2058          echo "export KMP_STACKSIZE=3g"  >> script_${ExeNameOut}.ksh
2059          echo "export KMP_LIBRARY=turnaround"  >> script_${ExeNameOut}.ksh
2060          echo "export MKL_SERIAL=YES"  >> script_${ExeNameOut}.ksh
2061          echo "OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh
2062        fi
2063
2064        if  ( ${OK_PARA_MPI} ) ; then
2065          eval comp_proc_mpi_loc=\${${comp}_PROC_MPI}
2066          # Default : ccc_mprun used if nb_proc gt 1
2067          # to have out/err per process on different files
2068          # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${SLURM_PROCID} 2>out_${ExeNameOut}.err.\${SLURM_PROCID}"  >> script_${ExeNameOut}.ksh
2069          echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2070          EXECUTION="${HOST_MPIRUN_COMMAND} -n ${comp_proc_mpi_loc} ./script_${ExeNameOut}.ksh"
2071        else
2072          # Default : ccc_mprun is NOT used if nb_proc eq 1
2073          # to have out/err per process on different files
2074          # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh
2075          echo "./${ExeNameOut}" >> script_${ExeNameOut}.ksh
2076          EXECUTION="/usr/bin/time ./script_${ExeNameOut}.ksh"
2077        fi
2078
2079        IGCM_debug_Print 1 "sys Curie : script_${ExeNameOut}.ksh contains"
2080        cat script_${ExeNameOut}.ksh
2081
2082      fi
2083
2084    done
2085
2086  fi
2087
2088  IGCM_debug_Print 1 "sys Curie : execution command is "
2089  IGCM_debug_Print 1 "$EXECUTION"
2090
2091  IGCM_debug_PopStack "IGCM_sys_build_execution_scripts"
2092}
2093
2094############################################################
2095# Check of space available on temporary filesytems
2096function IGCM_sys_check_quota {
2097    IGCM_debug_PushStack "IGCM_sys_check_quota"
2098    if ( $DEBUG_sys ) ; then
2099        echo "IGCM_sys_check_quota"
2100    fi
2101    IGCM_debug_PopStack "IGCM_sys_check_quota"
2102}
2103
2104##############################################################
2105# NCO OPERATOR
2106
2107function IGCM_sys_ncap2 {
2108  IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@
2109  if ( $DEBUG_sys ) ; then
2110    echo "IGCM_sys_ncap2 :" $@
2111  fi
2112
2113  typeset NB_ESSAI DELAI status i
2114  # number of tentative
2115  NB_ESSAI=3
2116  # time delay between tentative
2117  DELAI=2
2118
2119  i=0
2120  while [ $i -lt $NB_ESSAI ] ; do
2121    ncap2 "$@" > out_rsync 2>&1
2122    status=$?
2123    if [ ${status} -gt 0 ] ; then
2124      IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}"
2125      cat out_rsync
2126      \rm out_rsync
2127      IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2128      sleep $DELAI
2129    else
2130      \rm out_rsync
2131      break
2132    fi
2133    (( i = i + 1 ))
2134  done
2135
2136  if [ ${status} -gt 0 ] ; then
2137      echo "IGCM_sys_ncap2 : ncap2 error"
2138      IGCM_debug_Exit "ncap2"
2139  fi
2140
2141  IGCM_debug_PopStack "IGCM_sys_ncap2"
2142}
2143
2144function IGCM_sys_ncatted {
2145  IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@
2146  if ( $DEBUG_sys ) ; then
2147    echo "IGCM_sys_ncatted :" $@
2148  fi
2149
2150  typeset NB_ESSAI DELAI status i
2151  # number of tentative
2152  NB_ESSAI=3
2153  # time delay between tentative
2154  DELAI=2
2155
2156  i=0
2157  while [ $i -lt $NB_ESSAI ] ; do
2158    ncatted "$@" > out_rsync 2>&1
2159    status=$?
2160    if [ ${status} -gt 0 ] ; then
2161      IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}"
2162      cat out_rsync
2163      \rm out_rsync
2164      IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2165      sleep $DELAI
2166    else
2167      \rm out_rsync
2168      break
2169    fi
2170    (( i = i + 1 ))
2171  done
2172
2173  if [ ${status} -gt 0 ] ; then
2174      echo "IGCM_sys_ncatted : ncatted error"
2175      IGCM_debug_Exit "ncatted"
2176  fi
2177
2178  IGCM_debug_PopStack "IGCM_sys_ncatted"
2179}
2180
2181function IGCM_sys_ncbo {
2182  IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@
2183  if ( $DEBUG_sys ) ; then
2184    echo "IGCM_sys_ncbo :" $@
2185  fi
2186
2187  typeset NB_ESSAI DELAI status i
2188  # number of tentative
2189  NB_ESSAI=3
2190  # time delay between tentative
2191  DELAI=2
2192
2193  i=0
2194  while [ $i -lt $NB_ESSAI ] ; do
2195    ncbo $@ > out_rsync 2>&1
2196    status=$?
2197    if [ ${status} -gt 0 ] ; then
2198      IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}"
2199      cat out_rsync
2200      \rm out_rsync
2201      IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2202      sleep $DELAI
2203    else
2204      \rm out_rsync
2205      break
2206    fi
2207    (( i = i + 1 ))
2208  done
2209
2210  if [ ${status} -gt 0 ] ; then
2211      echo "IGCM_sys_ncbo : ncbo error"
2212      IGCM_debug_Exit "ncbo"
2213  fi
2214
2215  IGCM_debug_PopStack "IGCM_sys_ncbo"
2216}
2217
2218function IGCM_sys_ncdiff {
2219  IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@
2220  if ( $DEBUG_sys ) ; then
2221    echo "IGCM_sys_ncdiff :" $@
2222  fi
2223
2224  typeset NB_ESSAI DELAI status i
2225  # number of tentative
2226  NB_ESSAI=3
2227  # time delay between tentative
2228  DELAI=2
2229
2230  i=0
2231  while [ $i -lt $NB_ESSAI ] ; do
2232    ncdiff $@ > out_rsync 2>&1
2233    status=$?
2234    if [ ${status} -gt 0 ] ; then
2235      IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}"
2236      cat out_rsync
2237      \rm out_rsync
2238      IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2239      sleep $DELAI
2240    else
2241      \rm out_rsync
2242      break
2243    fi
2244    (( i = i + 1 ))
2245  done
2246
2247  if [ ${status} -gt 0 ] ; then
2248      echo "IGCM_sys_ncdiff : ncdiff error"
2249      IGCM_debug_Exit "ncdiff"
2250  fi
2251
2252  IGCM_debug_PopStack "IGCM_sys_ncdiff"
2253}
2254
2255function IGCM_sys_ncea {
2256  IGCM_debug_PushStack "IGCM_sys_ncea" -- $@
2257  if ( $DEBUG_sys ) ; then
2258    echo "IGCM_sys_ncea :" $@
2259  fi
2260
2261  typeset NB_ESSAI DELAI status i
2262  # number of tentative
2263  NB_ESSAI=3
2264  # time delay between tentative
2265  DELAI=2
2266
2267  i=0
2268  while [ $i -lt $NB_ESSAI ] ; do
2269    ncea $@ > out_rsync 2>&1
2270    status=$?
2271    if [ ${status} -gt 0 ] ; then
2272      IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}"
2273      cat out_rsync
2274      \rm out_rsync
2275      IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2276      sleep $DELAI
2277    else
2278      \rm out_rsync
2279      break
2280    fi
2281    (( i = i + 1 ))
2282  done
2283
2284  if [ ${status} -gt 0 ] ; then
2285      echo "IGCM_sys_ncea : ncea error"
2286      IGCM_debug_Exit "ncea"
2287  fi
2288
2289  IGCM_debug_PopStack "IGCM_sys_ncea"
2290}
2291
2292function IGCM_sys_ncecat {
2293  IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@
2294  if ( $DEBUG_sys ) ; then
2295    echo "IGCM_sys_ncecat :" $@
2296  fi
2297
2298  typeset NB_ESSAI DELAI status i
2299  # number of tentative
2300  NB_ESSAI=3
2301  # time delay between tentative
2302  DELAI=2
2303
2304  i=0
2305  while [ $i -lt $NB_ESSAI ] ; do
2306    ncecat $@ > out_rsync 2>&1
2307    status=$?
2308    if [ ${status} -gt 0 ] ; then
2309      IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}"
2310      cat out_rsync
2311      \rm out_rsync
2312      IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2313      sleep $DELAI
2314    else
2315      \rm out_rsync
2316      break
2317    fi
2318    (( i = i + 1 ))
2319  done
2320
2321  if [ ${status} -gt 0 ] ; then
2322      echo "IGCM_sys_ncecat : ncecat error"
2323      IGCM_debug_Exit "ncecat"
2324  fi
2325
2326  IGCM_debug_PopStack "IGCM_sys_ncecat"
2327}
2328
2329function IGCM_sys_ncflint {
2330  IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@
2331  if ( $DEBUG_sys ) ; then
2332    echo "IGCM_sys_ncflint :" $@
2333  fi
2334
2335  typeset NB_ESSAI DELAI status i
2336  # number of tentative
2337  NB_ESSAI=3
2338  # time delay between tentative
2339  DELAI=2
2340
2341  i=0
2342  while [ $i -lt $NB_ESSAI ] ; do
2343    ncflint $@ > out_rsync 2>&1
2344    status=$?
2345    if [ ${status} -gt 0 ] ; then
2346      IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}"
2347      cat out_rsync
2348      \rm out_rsync
2349      IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2350      sleep $DELAI
2351    else
2352      \rm out_rsync
2353      break
2354    fi
2355    (( i = i + 1 ))
2356  done
2357
2358  if [ ${status} -gt 0 ] ; then
2359      echo "IGCM_sys_ncflint : ncflint error"
2360      IGCM_debug_Exit "ncflint"
2361  fi
2362
2363  IGCM_debug_PopStack "IGCM_sys_ncflint"
2364}
2365
2366function IGCM_sys_ncks {
2367  IGCM_debug_PushStack "IGCM_sys_ncks" -- $@
2368  if ( $DEBUG_sys ) ; then
2369    echo "IGCM_sys_ncks :" $@
2370  fi
2371
2372  typeset NB_ESSAI DELAI status i
2373  # number of tentative
2374  NB_ESSAI=3
2375  # time delay between tentative
2376  DELAI=2
2377
2378  i=0
2379  while [ $i -lt $NB_ESSAI ] ; do
2380    ncks $@ > out_rsync 2>&1
2381    status=$?
2382    if [ ${status} -gt 0 ] ; then
2383      IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}"
2384      cat out_rsync
2385      \rm out_rsync
2386      IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2387      sleep $DELAI
2388    else
2389      \rm out_rsync
2390      break
2391    fi
2392    (( i = i + 1 ))
2393  done
2394
2395  if [ ${status} -gt 0 ] ; then
2396      echo "IGCM_sys_ncks : ncks error"
2397      IGCM_debug_Exit "ncks"
2398  fi
2399
2400  IGCM_debug_PopStack "IGCM_sys_ncks"
2401}
2402
2403function IGCM_sys_ncpdq {
2404  IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@
2405  if ( $DEBUG_sys ) ; then
2406    echo "IGCM_sys_ncpdq :" $@
2407  fi
2408
2409  typeset NB_ESSAI DELAI status i
2410  # number of tentative
2411  NB_ESSAI=3
2412  # time delay between tentative
2413  DELAI=2
2414
2415  i=0
2416  while [ $i -lt $NB_ESSAI ] ; do
2417    ncpdq $@ > out_rsync 2>&1
2418    status=$?
2419    if [ ${status} -gt 0 ] ; then
2420      IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}"
2421      cat out_rsync
2422      \rm out_rsync
2423      IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2424      sleep $DELAI
2425    else
2426      \rm out_rsync
2427      break
2428    fi
2429    (( i = i + 1 ))
2430  done
2431
2432  if [ ${status} -gt 0 ] ; then
2433      echo "IGCM_sys_ncpdq : ncpdq error"
2434      IGCM_debug_Exit "ncpdq"
2435  fi
2436
2437  IGCM_debug_PopStack "IGCM_sys_ncpdq"
2438}
2439
2440function IGCM_sys_ncra {
2441  IGCM_debug_PushStack "IGCM_sys_ncra" -- $@
2442  if ( $DEBUG_sys ) ; then
2443    echo "IGCM_sys_ncra :" $@
2444  fi
2445
2446  typeset NB_ESSAI DELAI status i
2447  # number of tentative
2448  NB_ESSAI=3
2449  # time delay between tentative
2450  DELAI=2
2451
2452  i=0
2453  while [ $i -lt $NB_ESSAI ] ; do
2454    ncra $@ > out_rsync 2>&1
2455    status=$?
2456    if [ ${status} -gt 0 ] ; then
2457      IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}"
2458      cat out_rsync
2459      \rm out_rsync
2460      IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2461      sleep $DELAI
2462    else
2463      \rm out_rsync
2464      break
2465    fi
2466    (( i = i + 1 ))
2467  done
2468
2469  if [ ${status} -gt 0 ] ; then
2470      echo "IGCM_sys_ncra : ncra error"
2471      IGCM_debug_Exit "ncra"
2472  fi
2473
2474  IGCM_debug_PopStack "IGCM_sys_ncra"
2475}
2476
2477function IGCM_sys_ncrcat {
2478  IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@
2479  if ( $DEBUG_sys ) ; then
2480    echo "IGCM_sys_ncrcat :" $@
2481  fi
2482
2483  typeset NB_ESSAI DELAI status i lastArg
2484  # number of tentative
2485  NB_ESSAI=3
2486  # time delay between tentative
2487  DELAI=2
2488
2489  i=0
2490  while [ $i -lt $NB_ESSAI ] ; do
2491    ncrcat $@ > out_rsync 2>&1
2492    status=$?
2493    if [ ${status} -gt 0 ] ; then
2494      IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}"
2495      cat out_rsync
2496      \rm out_rsync
2497      IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2498      sleep $DELAI
2499    elif [ ! "X$( grep "WARNING Intra-file non-monotonicity" out_rsync )" = "X" ] ; then
2500      IGCM_debug_Print 2 "IGCM_sys_ncrcat : WARNING Intra-file non-monotonicity"
2501      cat out_rsync
2502      # remove files having corrupted time axis
2503      eval lastArg=\${$#}
2504      IGCM_debug_Print 2 "IGCM_sys_ncrcat : Delete ${lastArg}"
2505      \rm ${lastArg}
2506      \rm out_rsync
2507      IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2508      sleep $DELAI
2509    else
2510      \rm out_rsync
2511      break
2512    fi
2513    (( i = i + 1 ))
2514  done
2515
2516  if [ ${status} -gt 0 ] ; then
2517      echo "IGCM_sys_ncrcat : ncrcat error"
2518      #IGCM_debug_Exit "ncrcat"
2519  fi
2520
2521  IGCM_debug_PopStack "IGCM_sys_ncrcat"
2522}
2523
2524function IGCM_sys_ncrename {
2525  IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@
2526  if ( $DEBUG_sys ) ; then
2527    echo "IGCM_sys_ncrename :" $@
2528  fi
2529
2530  typeset NB_ESSAI DELAI status i
2531  # number of tentative
2532  NB_ESSAI=3
2533  # time delay between tentative
2534  DELAI=2
2535
2536  i=0
2537  while [ $i -lt $NB_ESSAI ] ; do
2538    ncrename $@ > out_rsync 2>&1
2539    status=$?
2540    if [ ${status} -gt 0 ] ; then
2541      IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}"
2542      cat out_rsync
2543      \rm out_rsync
2544      IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2545      sleep $DELAI
2546    else
2547      \rm out_rsync
2548      break
2549    fi
2550    (( i = i + 1 ))
2551  done
2552
2553  if [ ${status} -gt 0 ] ; then
2554      echo "IGCM_sys_ncrename : ncrename error"
2555      IGCM_debug_Exit "ncrename"
2556  fi
2557
2558  IGCM_debug_PopStack "IGCM_sys_ncrename"
2559}
2560
2561function IGCM_sys_ncwa {
2562  IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@
2563  if ( $DEBUG_sys ) ; then
2564    echo "IGCM_sys_ncwa :" $@
2565  fi
2566
2567  typeset NB_ESSAI DELAI status i
2568  # number of tentative
2569  NB_ESSAI=3
2570  # time delay between tentative
2571  DELAI=2
2572
2573  i=0
2574  while [ $i -lt $NB_ESSAI ] ; do
2575    ncwa $@ > out_rsync 2>&1
2576    status=$?
2577    if [ ${status} -gt 0 ] ; then
2578      IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}"
2579      cat out_rsync
2580      \rm out_rsync
2581      IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again."
2582      sleep $DELAI
2583    else
2584      \rm out_rsync
2585      break
2586    fi
2587    (( i = i + 1 ))
2588  done
2589
2590  if [ ${status} -gt 0 ] ; then
2591      echo "IGCM_sys_ncwa : ncwa error"
2592      IGCM_debug_Exit "ncwa"
2593  fi
2594
2595  IGCM_debug_PopStack "IGCM_sys_ncwa"
2596}
2597
2598##############################################################
2599# CDO OPERATOR
2600
2601function IGCM_sys_cdo {
2602  IGCM_debug_PushStack "IGCM_sys_cdo" -- $@
2603  if ( $DEBUG_sys ) ; then
2604    echo "IGCM_sys_cdo :" $@
2605  fi
2606
2607  typeset status
2608
2609  \cdo $@ > out_rsync 2>&1
2610  status=$?
2611  if [ ${status} -gt 0 ] ; then
2612    echo "IGCM_sys_cdo : error code ${status}"
2613    cat out_rsync
2614    \rm out_rsync
2615    IGCM_debug_PopStack "IGCM_sys_cdo"
2616    return 1
2617  else
2618    IGCM_debug_PopStack "IGCM_sys_cdo"
2619    return 0
2620  fi
2621
2622  IGCM_debug_PopStack "IGCM_sys_cdo"
2623}
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