source: tags/libIGCM_v2.0_rc2/AA_atlas_ORCA_LIM @ 1456

Last change on this file since 1456 was 758, checked in by mafoipsl, 11 years ago

On curie, delete #MSUB -E '--no-requeue' option. The system will requeue jobs automatically.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.3 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_OPA        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_OPA        # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -q xlarge
19#-Q- curie #MSUB -Q normal
20#-Q- curie set +x
21#-Q- platine #!/usr/bin/ksh
22#-Q- platine ##################
23#-Q- platine ## PLATINE   CEA ##
24#-Q- platine ##################
25#-Q- platine #BSUB -J ATL_OPA           # Nom du job
26#-Q- platine #BSUB -N                   # message a la fin du job
27#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
28#-Q- platine #BSUB -W 1:00              # Limite temps
29#-Q- platine #BSUB -q post              # Passage en queue post
30#-Q- platine #BSUB -L /bin/ksh
31#-Q- sx8brodie #!/bin/ksh
32#-Q- sx8brodie #######################
33#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
34#-Q- sx8brodie #######################
35#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
36#-Q- sx8brodie # @ wall_clock_limit = 2:00:00
37#-Q- sx8brodie # Nom du travail LoadLeveler
38#-Q- sx8brodie # @ job_name   = ATL_OPA
39#-Q- sx8brodie # Fichier de sortie standard du travail       
40#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
41#-Q- sx8brodie # Fichier de sortie d'erreur du travail
42#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
43#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
44#-Q- sx8brodie # @ notification = error
45#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
46#-Q- sx8brodie # @ queue
47#-Q- aix6 #!/bin/ksh
48#-Q- aix6 #######################
49#-Q- aix6 ##   VARGAS   IDRIS  ##
50#-Q- aix6 #######################
51#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
52#-Q- aix6 # @ wall_clock_limit = 2:00:00
53#-Q- aix6 # Nom du travail LoadLeveler
54#-Q- aix6 # @ job_name   = ATL_OPA
55#-Q- aix6 # Fichier de sortie standard du travail       
56#-Q- aix6 # @ output     = $(job_name).$(jobid)
57#-Q- aix6 # Fichier de sortie d'erreur du travail
58#-Q- aix6 # @ error      =  $(job_name).$(jobid)
59#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
60#-Q- aix6 # @ notification = error
61#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
62#-Q- aix6 # @ queue
63#-Q- ulam #!/bin/ksh
64#-Q- ulam #######################
65#-Q- ulam ##   ULAM   IDRIS  ##
66#-Q- ulam #######################
67#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
68#-Q- ulam # @ wall_clock_limit = 2:00:00
69#-Q- ulam # Nom du travail LoadLeveler
70#-Q- ulam # @ job_name   = ATL_OPA
71#-Q- ulam # Fichier de sortie standard du travail       
72#-Q- ulam # @ output     = $(job_name).$(jobid)
73#-Q- ulam # Fichier de sortie d'erreur du travail
74#-Q- ulam # @ error      =  $(job_name).$(jobid)
75#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
76#-Q- ulam # @ notification = error
77#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
78#-Q- ulam # @ queue
79#-Q- sx8mercure #!/bin/ksh
80#-Q- sx8mercure ######################
81#-Q- sx8mercure ## SX8MERCURE   CEA ##
82#-Q- sx8mercure ######################
83#-Q- sx8mercure #PBS -N  ATL_OPA             # Nom du job
84#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
85#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
86#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
87#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
88#-Q- sx8mercure #PBS -q scalaire
89#-Q- sx8mercure #PBS -r n
90#-Q- sx9mercure #!/bin/ksh
91#-Q- sx9mercure ######################
92#-Q- sx9mercure ## SX9MERCURE  CCRT ##
93#-Q- sx9mercure ######################
94#-Q- sx9mercure #PBS -N  ATL_OPA             # Nom du job
95#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
96#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
97#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
98#-Q- sx9mercure #PBS -l elapstim_req=2:00:00   # Limite temps a 2 heures
99#-Q- sx9mercure #PBS -q scalaire
100#-Q- sx9mercure #PBS -r n
101#-Q- titane #!/bin/ksh
102#-Q- titane ######################
103#-Q- titane ## TITANE   CEA ##
104#-Q- titane ######################
105#-Q- titane #MSUB -r ATL_OPA        # Nom du job               
106#-Q- titane #MSUB -eo
107#-Q- titane #MSUB -n 1              # Reservation du processus
108#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
109#-Q- titane #MSUB -q mono
110#-Q- titane #MSUB -E '-rn'
111#-Q- default #!/bin/ksh
112#-Q- default ##################
113#-Q- default ## DEFAULT HOST ##
114#-Q- default ##################
115
116#**************************************************************
117# Author: Sebastien Denvil
118# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
119# $Revision::                                          $ Revision of last commit
120# $Author::                                            $ Author of last commit
121# $Date::                                              $ Date of last commit
122# IPSL (2006)
123#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
124#
125#**************************************************************
126
127#set -eu
128#set -vx
129
130date
131
132#-Q- sx8brodie export OMP_NUM_THREADS=1
133#-Q- aix6 export OMP_NUM_THREADS=1
134#-Q- ulam export OMP_NUM_THREADS=1
135
136#D- Task type (computing or post-processing)
137TaskType=post-processing
138
139########################################################################
140
141. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
142      ( ${DEBUG_debug} ) && IGCM_debug_Check
143. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
144     ( ${DEBUG_debug} ) && IGCM_card_Check
145. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
146     ( ${DEBUG_debug} ) && IGCM_date_Check
147#-------
148. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
149. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
150
151########################################################################
152
153#set -vx
154
155IGCM_sys_MkdirWork ${RUN_DIR_PATH}
156IGCM_sys_Cd ${RUN_DIR_PATH}
157
158# ------------------------------------------------------------------
159# Test if all was right before proceeding further
160# ------------------------------------------------------------------
161IGCM_debug_Verif_Exit_Post
162
163if [ ${StandAlone} = true ] ; then
164    CARD_DIR=${SUBMIT_DIR}
165else
166    CARD_DIR=${RUN_DIR_PATH}
167    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
168    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
169    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
170    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
171
172fi
173
174#==================================
175# First of all
176#
177# Read libIGCM compatibility version in config.card
178# Read UserChoices section
179# Read Ensemble section
180# Read Post section
181# Define all netcdf output directories
182#==================================
183IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
184
185#
186IGCM_sys_MkdirArchive ${R_FIGR}
187
188R_ATLAS=ATLAS/SE_${YEARS}
189R_OUT_OCE=${R_SAVE}/OCE
190R_OUT_ICE=${R_SAVE}/ICE
191DIR_OUT=${DIR_OUT:=SE}
192
193RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
194IGCM_sys_MkdirWork ${RUN_DIR}
195IGCM_sys_Cd ${RUN_DIR}
196
197# --------------------------------------------
198# Insert your commands between III...III lines
199# and precise produced directories to save
200# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
201
202IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
203IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
204IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
205IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
206IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
207
208atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
209atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
210atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
211#atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
212atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
213atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
214
215# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
216
217# Put ferret journal files together
218for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do 
219    echo -e "\n\n################################" ;
220    echo -e "$file\n" ; cat $file ;
221done  > ${R_ATLAS}/OCE_T/allferretscript.txt
222
223for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do 
224    echo -e "\n\n################################" ;
225    echo -e "$file\n" ; cat $file ;
226done  > ${R_ATLAS}/OCE_U/allferretscript.txt
227
228for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do 
229    echo -e "\n\n################################" ;
230    echo -e "$file\n" ; cat $file ;
231done  > ${R_ATLAS}/OCE_V/allferretscript.txt
232
233for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do 
234    echo -e "\n\n################################" ;
235    echo -e "$file\n" ; cat $file ;
236done  > ${R_ATLAS}/OCE/allferretscript.txt
237
238for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do 
239    echo -e "\n\n################################" ;
240    echo -e "$file\n" ; cat $file ;
241done  > ${R_ATLAS}/ICE/allferretscript.txt
242
243# WHILE WAITING FOR A MORE GENERIC SOLUTION
244if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
245    IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
246    atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
247    for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
248        echo -e "\n\n################################" ;
249        echo -e "$file\n" ; cat $file ;
250    done > ${R_ATLAS}/ZNL/allferretscript.txt
251fi
252
253# Clear some files
254find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
255
256# Save files
257IGCM_sys_Put_Dir ATLAS ${R_FIGR}
258
259IGCM_sys_Rm -Rf ATLAS
260IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
261IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc     
262# WHILE WAITING FOR A MORE GENERIC SOLUTION
263if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
264    IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
265fi
266
267# DODS copy
268IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
269[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
270
271# Clean RUN_DIR_PATH (necessary for cesium and titane only)
272IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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