source: tags/libIGCM_v2.2/AA_pack_debug

Last change on this file was 929, checked in by sdipsl, 11 years ago

machine cleanup
whitespace cleanup

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File size: 9.9 KB
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1#-Q- curie ######################
2#-Q- curie ## CURIE   TGCC/CEA ##
3#-Q- curie ######################
4#-Q- curie #MSUB -r PACKDEBUG      # Nom du job
5#-Q- curie #MSUB -eo
6#-Q- curie #MSUB -n 1              # Reservation du processus
7#-Q- curie #MSUB -T 3600          # Limite de temps elapsed du job
8#-Q- curie #MSUB -q xlarge
9#-Q- curie #MSUB -Q normal
10#-Q- curie #MSUB -A ::default_project::
11#-Q- curie set +x
12#-Q- ada #!/bin/ksh
13#-Q- ada #######################
14#-Q- ada ## ADA         IDRIS ##
15#-Q- ada #######################
16#-Q- ada # @ job_type = serial
17#-Q- ada # @ requirements = (Feature == "prepost")
18#-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss
19#-Q- ada # @ wall_clock_limit = 10:00:00
20#-Q- ada # Nom du travail LoadLeveler
21#-Q- ada # @ job_name   = PACKDEBUG
22#-Q- ada # Fichier de sortie standard du travail
23#-Q- ada # @ output     = $(job_name).$(jobid)
24#-Q- ada # Fichier de sortie d'erreur du travail
25#-Q- ada # @ error      =  $(job_name).$(jobid)
26#-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
27#-Q- ada # @ notification = error
28#-Q- ada # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $DateBegin ; $DateEnd ; $PeriodPack ; $StandAlone ; $MASTER
29#-Q- ada # @ queue
30#-Q- lxiv8 ######################
31#-Q- lxiv8 ## OBELIX      LSCE ##
32#-Q- lxiv8 ######################
33#-Q- lxiv8 #PBS -N PACKDEBUG
34#-Q- lxiv8 #PBS -m a
35#-Q- lxiv8 #PBS -j oe
36#-Q- lxiv8 #PBS -q medium
37#-Q- lxiv8 #PBS -o PACKDEBUG.$$
38#-Q- lxiv8 #PBS -S /bin/ksh
39#-Q- default #!/bin/ksh
40#-Q- default ##################
41#-Q- default ## DEFAULT HOST ##
42#-Q- default ##################
43
44#**************************************************************
45# Author: Sebastien Denvil
46# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
47# $Revision::                                          $ Revision of last commit
48# $Author::                                            $ Author of last commit
49# $Date::                                              $ Date of last commit
50# IPSL (2006)
51#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
52#
53#**************************************************************
54
55#set -eu
56#set -vx
57
58date
59
60#D- Task type (computing or post-processing)
61TaskType=post-processing
62
63########################################################################
64
65#D- Flag to determine if this job in a standalone mode
66#D- Default : value from AA_job if any
67StandAlone=${StandAlone:=true}
68
69#D- Path to libIGCM
70#D- Default : value from AA_job if any
71# WARNING For StandAlone use : To run this script on some machine (ulam and cesium)
72# WARNING you must check MirrorlibIGCM variable in sys library.
73# WARNING If this variable is true, you must use libIGCM_POST path instead
74# WARNING of your running libIGCM directory.
75libIGCM=${libIGCM:=::modipsl::/libIGCM}
76
77#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
78MASTER=${MASTER:=ada|curie}
79
80#D- Flag to determine begin date for restart pack
81#D- Default : value from AA_job if any
82DateBegin=${DateBegin:=20000101}
83
84#D- Flag to determine end date for restart pack
85#D- Default : value from AA_job if any
86DateEnd=${DateEnd:=20691231}
87
88#D- Flag to determine pack period
89#D- Default : value from AA_job if any
90PeriodPack=${PeriodPack:=10Y}
91
92#D- Uncomment to run interactively
93#D- For testing purpose, will be remove
94#SUBMIT_DIR=${PWD}
95#RUN_DIR_PATH=${SCRATCHDIR}/Pack_Test
96
97#D- Increased verbosity (1, 2, 3)
98#D- Default : value from AA_job if any
99Verbosity=${Verbosity:=3}
100
101#D- Low level debug : to bypass lib test checks and stack construction
102#D- Default : value from AA_job if any
103DEBUG_debug=${DEBUG_debug:=false}
104
105#D- Keep following comments for now. Will be remove.
106
107#on veut archiver les fichiers restart
108#Dans le cadre du demenagement ils seront renommes
109#ATM/Restart/****.nc
110#OCE/Restart/****.nc
111#...
112#sous la forme
113#RESTART/ATM_****.nc
114#RESTART/OCE_****.nc
115#Attention de bien conserver les dates d'origines
116#
117#Dans le cadre de la production nouvelle chaine
118#ils auront directement le bon nom
119#
120#On veut egalement que l'archive soit par periode de temps
121# cette periode est definie par la taille du pack donc connue
122# en entree du script (1M, 1Y, 5Y, 10Y etc...)
123#
124# $1= PATH/config_card d'une simulation avec
125# TagName/JobName/ExperimentName/SpaceName/DateBegin/DateEnd
126# $2=PeriodPack en M/m ou Y/y
127
128########################################################################
129
130. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
131. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
132. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
133#-------
134. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
135. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
136. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
137#-------
138( ${DEBUG_debug} ) && IGCM_debug_Check
139( ${DEBUG_debug} ) && IGCM_card_Check
140( ${DEBUG_debug} ) && IGCM_date_Check
141
142########################################################################
143
144#set -vx
145
146RUN_DIR=${RUN_DIR_PATH}
147IGCM_sys_MkdirWork ${RUN_DIR}
148IGCM_sys_Cd ${RUN_DIR}
149
150# ------------------------------------------------------------------
151# Test if all was right before proceeding further
152# ------------------------------------------------------------------
153IGCM_debug_Verif_Exit_Post
154
155if [ ${StandAlone} = true ] ; then
156    CARD_DIR=${SUBMIT_DIR}
157else
158    CARD_DIR=${RUN_DIR_PATH}
159    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
160    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
161    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
162    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
163fi
164
165#==================================
166# First of all
167#
168# Read libIGCM compatibility version in config.card
169# Read UserChoices section
170# Read Ensemble section
171# Read Post section
172# Define all netcdf output directories
173#==================================
174IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
175
176IGCM_sys_TestDirArchive ${R_SAVE}
177[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
178
179#STORE_DEBUG=/ccc/store/cont003/dsm/p86denv/.../DEBUG
180STORE_DEBUG=${R_SAVE}/DEBUG
181IGCM_sys_MkdirArchive ${STORE_DEBUG}
182
183#cd ${STORE_DEBUG}
184#rm -f *
185
186# Switch to script variables meaning (try to be compatible with ipsl_pack TGCC moving procedure)
187JobName=${config_UserChoices_JobName}
188echo $JobName $DateBegin $DateEnd
189
190# Clear txt file lists
191rm -f ${RUN_DIR}/liste_debug_files.txt
192rm -f ${RUN_DIR}/liste_out_files.txt
193rm -f ${RUN_DIR}/new_liste_debug_files.txt
194rm -f ${RUN_DIR}/liste_pack_*.txt
195
196# Create sorted debug list to work with
197find ${R_BUFR}/*/Debug -type f | sort >> ${RUN_DIR}/liste_debug_files.txt
198
199# Rename debug files we will work with using symlinks. use ???_ prefix ie NF-2
200#gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("cp --preserve " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
201gawk -F/ '{dest_name=$(NF-2)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_debug_files.txt
202
203# Add out_ : output of execution files
204find ${R_BUFR}/Out -type f -name '*out_*' | sort >> ${RUN_DIR}/liste_out_files.txt
205
206# Rename out files we will work with using symlinks. use Out_ prefix ie NF-1
207gawk -F/ '{dest_name=$(NF-1)("_") $(NF); system("ln -s " $0 " "dest_name)}' ${RUN_DIR}/liste_out_files.txt
208
209# List renamed debug files. Exclude Job_xxx files.
210find ${RUN_DIR} -maxdepth 1 -mindepth 1 -name "???_*${JobName}*" -ls | sort -k 11 > ${RUN_DIR}/new_liste_debug_files.txt
211
212# ------------------------------------------------------------------
213# Test if all was right before proceeding further
214# ------------------------------------------------------------------
215IGCM_debug_Verif_Exit_Post
216
217# Init loop
218date_begin_pack=${DateBegin}
219date_end_simulation=${DateEnd}
220number_pack=1
221
222IGCM_debug_PrintVariables 3 date_begin_pack
223IGCM_debug_PrintVariables 3 date_end_simulation
224
225while [ ${date_begin_pack} -le ${date_end_simulation} ] ; do
226
227  IGCM_debug_PrintVariables 3 number_pack
228
229  DaysTemp=$( IGCM_date_DaysInCurrentPeriod ${date_begin_pack} ${PeriodPack} )
230  date_end_pack=$( IGCM_date_AddDaysToGregorianDate ${date_begin_pack} $(( ${DaysTemp} - 1 )) )
231
232  for file in $( gawk '{print $11}' ${RUN_DIR}/new_liste_debug_files.txt ); do
233    extract_date_file=$( echo ${file}  | sed -e "s/.*${JobName}_[0-9]*_//" )
234    date_file=$( echo ${extract_date_file} | sed 's/\([0-9]\{8\}\)_.*$/\1/g' )
235#   echo pack n°${number_pack}  ${date_file} ${date_begin_pack} ${date_end_pack}
236    if [ ${date_file} -le ${date_end_pack} ] && [ ${date_file} -ge ${date_begin_pack} ] ; then
237        echo $( basename ${file} ) >> ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
238        echo $( readlink ${file} ) >> ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt
239#    Will not work. Need to find a better ordering.
240#    elif [ ${date_file} -ge ${date_end_pack} ] ; then
241#      break
242    fi
243  done
244
245  # Create tar files
246  IGCM_debug_Print 1 "Tar ongoing"
247  tar -cvf ${JobName}_${date_begin_pack}_${date_end_pack}_debug.tar --dereference --files-from ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt
248  # Save it
249  IGCM_sys_Put_Out ${JobName}_${date_begin_pack}_${date_end_pack}_debug.tar ${STORE_DEBUG}
250  # Clean it
251  IGCM_sys_Rm ${JobName}_${date_begin_pack}_${date_end_pack}_debug.tar
252  # ------------------------------------------------------------------
253  # Test if all was right before proceeding cleaning
254  # ------------------------------------------------------------------
255  IGCM_debug_Verif_Exit_Post
256  # Clean links
257  cat ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
258  # Clean files links pointed to
259  cat ${RUN_DIR}/liste_remove_pack_${date_begin_pack}_${date_end_pack}.txt | xargs rm
260  # Save the list of files that has been pack (tar)
261  #mv ${RUN_DIR}/liste_pack_${date_begin_pack}_${date_end_pack}.txt ${STORE_DEBUG}
262  IGCM_debug_Print 1 "Tar and cleaning done"
263
264  (( number_pack = number_pack + 1 ))
265
266  # Add 1 day to date_end_pack to have the new date_begin_pack
267  date_begin_pack=$( IGCM_date_AddDaysToGregorianDate ${date_end_pack} 1 )
268
269done
270
271# Clean RUN_DIR_PATH (necessary for cesium and titane only)
272IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
273
274date
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