| 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Patrick Brockmann, Martial Mancip |
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| 5 | # Contact: Patrick.Brockmann__at__cea.fr Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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| 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #================================================== |
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| 15 | # The documentation of this file can be automatically generated |
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| 16 | # if you use the prefix #D- for comments to be extracted. |
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| 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #================================================== |
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| 19 | |
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| 20 | #================================================== |
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| 21 | # Add high level verbosity |
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| 22 | typeset -i Verbosity=${Verbosity:=3} |
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| 23 | |
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| 24 | #================================================== |
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| 25 | # DEBUG_debug |
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| 26 | # Add low level verbosity |
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| 27 | typeset DEBUG_debug=${DEBUG_debug:=false} |
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| 28 | |
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| 29 | #================================================== |
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| 30 | # GENERATE RANDOM ERROR ; only apply if ( ${DEBUG_debug} ) |
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| 31 | typeset RandomError=false |
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| 32 | |
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| 33 | # Stack file containing call tree will be stored there. |
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| 34 | if ( $DEBUG_debug ) ; then |
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| 35 | if [ X${TaskType} = Xcomputing ]; then |
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| 36 | typeset StackFileLocation=${StackFileLocation:=${PWD}} |
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| 37 | typeset StackFileName=computing.stack.$$ |
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| 38 | elif [ X${TaskType} = Xpost-processing ]; then |
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| 39 | typeset StackFileLocation=${POST_DIR:=${StackFileLocation}} |
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| 40 | typeset StackFileName=post-processing.stack.$$ |
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| 41 | elif [ X${TaskType} = Xchecking ]; then |
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| 42 | typeset StackFileLocation=${POST_DIR:=${PWD}} |
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| 43 | typeset StackFileName=checking.stack.$$ |
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| 44 | else |
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| 45 | typeset StackFileLocation=${POST_DIR:=${PWD}} |
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| 46 | typeset StackFileName=checking.stack.$$ |
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| 47 | fi |
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| 48 | |
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| 49 | if [ -f ${StackFileLocation}/${StackFileName} ] ; |
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| 50 | then |
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| 51 | echo "Stack of an libIGCM job :" >> ${StackFileLocation}/${StackFileName} |
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| 52 | else |
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| 53 | echo "Stack of an libIGCM job :" > ${StackFileLocation}/${StackFileName} |
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| 54 | fi |
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| 55 | fi |
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| 56 | |
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| 57 | #================================================== |
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| 58 | # NULL_STR |
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| 59 | # Default null string |
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| 60 | typeset -r NULL_STR="_0_" |
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| 61 | |
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| 62 | #================================================== |
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| 63 | # libIGCM_CurrentTag |
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| 64 | # Current libIGCM tag, check compatibilty with *.card |
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| 65 | typeset -r libIGCM_CurrentTag="1.0" |
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| 66 | |
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| 67 | #================================================== |
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| 68 | # Exit Flag (internal debug) |
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| 69 | # When true, end the master loop AFTER SAVES FILES |
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| 70 | ExitFlag=false |
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| 71 | |
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| 72 | #================================================== |
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| 73 | # Declare a stack of functions calls |
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| 74 | unset IGCM_debug_Stack |
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| 75 | unset IGCM_debug_StackArgs |
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| 76 | unset IGCM_debug_StackTiming |
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| 77 | IGCM_debug_Stack[0]=${NULL_STR} |
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| 78 | IGCM_debug_StackArgs[0]=${NULL_STR} |
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| 79 | IGCM_debug_StackTiming[0]=${NULL_STR} |
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| 80 | IGCM_debug_LenStack=0 |
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| 81 | |
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| 82 | #D-#================================================================== |
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| 83 | #D-function IGCM_debug_getDate_ms |
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| 84 | #D- * Purpose: Give number of milliseconds since 01-jan-1970 |
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| 85 | function IGCM_debug_getDate_ms |
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| 86 | { |
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| 87 | typeset nanosecs ms |
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| 88 | # nano secondes since 01-jan-1970 |
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| 89 | nanosecs=$( date +%s%N ) |
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| 90 | |
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| 91 | # truncate the last 6 digits to get milliseconds since 01-jan-1970 |
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| 92 | ms=${nanosecs:0:${#nanosecs}-6} |
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| 93 | |
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| 94 | echo "$ms" |
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| 95 | } |
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| 96 | |
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| 97 | #D-#================================================================== |
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| 98 | #D-function IGCM_debug_sizeOfTabContent |
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| 99 | #D- * Purpose: Give sumed size of a list of files |
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| 100 | #D- * Usage: IGCM_debug_sizeOfTabContent entityList destination |
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| 101 | #D- * where entityList is a list of files or directory |
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| 102 | #D- * where dest is either a directory or a file name |
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| 103 | function IGCM_debug_sizeOfTabContent |
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| 104 | { |
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| 105 | typeset entityListe destination iEntity sizeKo sumSizeKo sumSizeMo |
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| 106 | |
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| 107 | eval set +A entityListe \${${1}} |
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| 108 | destination=${2} |
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| 109 | sumSizeKo=0 |
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| 110 | |
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| 111 | # Here we will try to compute size (file or directory size) from local path and not from archive. |
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| 112 | for ((i = 0; i < ${#entityListe[*]}; i += 1)) ; do |
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| 113 | if [ -f ${entityListe[$i]} ] ; then |
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| 114 | # One file or a bunch of files has been copied without renaming from a visible filesystem |
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| 115 | iEntity=${entityListe[$i]} |
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| 116 | elif [ -f ${entityListe[$i]##/*/} ] ; then |
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| 117 | # One file or a bunch of files has been copied without renaming from an non visible filesystem |
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| 118 | # remove path /home/login/../ from entityListe elements |
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| 119 | iEntity=${entityListe[$i]##/*/} |
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| 120 | elif [ -f ${destination} ] ; then |
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| 121 | # a file has been copied and renamed |
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| 122 | iEntity=${destination} |
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| 123 | elif [ -f ${destination}/${entityListe[$i]##/*/} ] ; then |
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| 124 | # a copy in a directory but not in ${PWD} |
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| 125 | iEntity=${destination}/${entityListe[$i]##/*/} |
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| 126 | elif [ -d ${entityListe[$i]} ] ; then |
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| 127 | # a directory has been copied from a non remote place |
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| 128 | iEntity=${entityListe[$i]} |
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| 129 | elif [ -d ${destination}/${entityListe[$i]##/*/} ] ; then |
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| 130 | # a directory has been copied from a remote archive and not renamed |
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| 131 | iEntity=${destination}/${entityListe[$i]##/*/} |
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| 132 | elif [ -d ${destination} ] ; then |
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| 133 | # a directory has been copied from a remote archive and renamed |
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| 134 | iEntity=${destination} |
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| 135 | fi |
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| 136 | sizeKo=$( du --apparent-size -sk ${iEntity} | gawk '{print $1}' ) |
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| 137 | sumSizeKo=$(( $sumSizeKo + $sizeKo )) |
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| 138 | done |
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| 139 | sumSizeMo=$( echo "scale=6;${sumSizeKo}/1024" | bc ) |
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| 140 | echo "${sumSizeKo}|${sumSizeMo}" |
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| 141 | } |
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| 142 | |
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| 143 | #D-#================================================================== |
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| 144 | #D-function IGCM_debug_send_AMQP_msg__MAILTUNNEL |
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| 145 | #D- * Purpose: Take over AMQP C client using mail as a message recipient |
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| 146 | #D- * One argument : base64 encoded message |
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| 147 | function IGCM_debug_send_AMQP_msg__MAILTUNNEL { |
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| 148 | |
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| 149 | typeset b64_encoded_msg mail_recipient |
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| 150 | typeset buffer send_messages mail_frequency |
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| 151 | typeset last_mail_date__file |
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| 152 | |
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| 153 | b64_encoded_msg=$1 |
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| 154 | |
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| 155 | buffer=/tmp/buffer.$$ |
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| 156 | mail_recipient="sebastien.denvil@ipsl.jussieu.fr" |
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| 157 | send_messages=0 |
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| 158 | mail_frequency=3600 # in seconds |
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| 159 | # use to keep track when was last mail sent (maybe to be replaced with global variable) |
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| 160 | last_mail_date__file=/tmp/stamp.$$ |
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| 161 | |
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| 162 | # init |
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| 163 | if [ ! -f "${buffer}" ]; then |
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| 164 | touch "${buffer}" |
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| 165 | fi |
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| 166 | |
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| 167 | # retrieve pending messages number |
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| 168 | messages_count=$( wc -l ${buffer} | gawk {'print $1'} ) |
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| 169 | |
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| 170 | if [ ! -f "${last_mail_date__file}" ]; then |
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| 171 | # if we are here, it means no mail has been sent yet |
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| 172 | # send the first mail |
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| 173 | [ ${messages_count} -gt 0 ] && send_messages=1 |
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| 174 | else |
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| 175 | # compute last time the file was changed (in seconds) |
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| 176 | seconds_since_last_mail=$(( $(date +%s) - $(stat -c %Y ${last_mail_date__file}) )) |
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| 177 | # send message when exceeding threshold |
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| 178 | [ ${seconds_since_last_mail} -gt ${mail_frequency} ] && send_messages=1 |
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| 179 | fi |
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| 180 | |
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| 181 | # queue messages in the buffer |
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| 182 | echo ${b64_encoded_msg} >> ${buffer} |
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| 183 | |
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| 184 | # send mail |
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| 185 | if ( [ ${send_messages} -eq 1 ] || [ X${FlushAMQP} = XTRUE ] ) ; then |
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| 186 | mail -s "[TEMPORARY AMQP CHANNEL]" ${mail_recipient} < ${buffer} # send buffer |
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| 187 | rm -f $buffer ; touch ${buffer} # clear buffer |
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| 188 | touch ${last_mail_date__file} # memorize last mail date |
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| 189 | fi |
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| 190 | |
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| 191 | # Allways all good for now. |
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| 192 | return 0 |
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| 193 | } |
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| 194 | |
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| 195 | #D-#================================================================== |
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| 196 | #D-function IGCM_debug_SendAMQP |
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| 197 | #D- * Purpose: Send body; encoded body and config.card to rabbitMQ |
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| 198 | function IGCM_debug_sendAMQP |
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| 199 | { |
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| 200 | typeset decal first additionnalOption encodedBody |
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| 201 | |
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| 202 | # Encode message Body |
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| 203 | encodedBody=$( echo "${Body}" | base64 -w 0 ) |
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| 204 | |
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| 205 | # Send config.card ? |
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| 206 | if [ X${1} = Xactivate ] ; then |
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| 207 | # Encode config.card |
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| 208 | cat ${SUBMIT_DIR}/config.card | base64 -w 0 > ${SUBMIT_DIR}/config.card.base64 |
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| 209 | # Prepare additionnal option |
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| 210 | additionnalOption="-f ${SUBMIT_DIR}/config.card.base64" |
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| 211 | else |
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| 212 | additionnalOption= |
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| 213 | fi |
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| 214 | |
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| 215 | # Only cosmetics : stack file |
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| 216 | decal=0 |
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| 217 | while [ ${decal} -lt ${IGCM_debug_LenStack} ]; do |
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| 218 | printf ' ' >> ${StackFileLocation}/${StackFileName} |
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| 219 | (( decal = decal + 1 )) |
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| 220 | done |
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| 221 | # Log to stack file using human readable format |
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| 222 | echo sendAMQPMsg -h localhost -p 5672 ${additionnalOption} -b "${Body}" >> ${StackFileLocation}/${StackFileName} |
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| 223 | |
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| 224 | # Log separately encoded AMQP message command for reuse in a mock up |
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| 225 | echo sendAMQPMsg -h localhost -p 5672 ${additionnalOption} -b ${encodedBody} >> /tmp/send.AMQP.${jobid}.history.txt |
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| 226 | |
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| 227 | # Send the message |
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| 228 | if [ X${BigBrotherChannel} = XMAIL ] ; then |
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| 229 | IGCM_debug_send_AMQP_msg__MAILTUNNEL "${encodedBody}" |
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| 230 | status=$? |
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| 231 | else |
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| 232 | sendAMQPMsg -h localhost -p 5672 ${additionnalOption} -b ${encodedBody} |
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| 233 | status=$? |
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| 234 | fi |
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| 235 | |
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| 236 | status=$? |
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| 237 | if [ ${status} -gt 0 ] ; then |
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| 238 | IGCM_debug_Print 2 "IGCM_debug_Push/PopStack/ActivateBigBro : command sendAMQPMsg failed error code ${status}" |
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| 239 | echo sendAMQPMsg -h localhost -p 5672 -b "${Body}" |
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| 240 | exit |
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| 241 | fi |
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| 242 | } |
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| 243 | |
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| 244 | #D-#================================================================== |
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| 245 | #D-function IGCM_debug_CallStack |
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| 246 | #D-* Purpose: Print the call stack tree from the oldest to the youngest (opposite of the display standard) |
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| 247 | #D- |
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| 248 | function IGCM_debug_CallStack { |
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| 249 | if ( $DEBUG_debug ) ; then |
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| 250 | # Cosmetics |
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| 251 | typeset i decal |
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| 252 | i=0 |
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| 253 | until [ $i -eq ${IGCM_debug_LenStack} ]; do |
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| 254 | decal=0 |
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| 255 | until [ $decal -eq ${i} ]; do |
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| 256 | printf -- ' ' |
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| 257 | (( decal = decal + 1 )) |
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| 258 | done |
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| 259 | echo "$i - ${IGCM_debug_Stack[$(( $IGCM_debug_LenStack-$i-1 ))]}" "(${IGCM_debug_StackArgs[$(( $IGCM_debug_LenStack-$i-1 ))]})" |
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| 260 | ((i = i + 1)) |
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| 261 | done |
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| 262 | fi |
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| 263 | } |
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| 264 | |
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| 265 | #D-#================================================================== |
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| 266 | #D-function IGCM_debug_PushStack |
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| 267 | #D-* Purpose: Push a function name in the stack |
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| 268 | #D- |
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| 269 | function IGCM_debug_PushStack { |
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| 270 | if ( $DEBUG_debug ) ; then |
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| 271 | typeset decal inputs startTime_ms |
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| 272 | |
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| 273 | # Only cosmetics : stack file |
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| 274 | echo >> ${StackFileLocation}/${StackFileName} |
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| 275 | decal=0 |
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| 276 | while [ ${decal} -lt ${IGCM_debug_LenStack} ]; do |
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| 277 | printf ' ' >> ${StackFileLocation}/${StackFileName} |
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| 278 | (( decal = decal + 1 )) |
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| 279 | done |
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| 280 | |
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| 281 | # Fill the stack file |
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| 282 | echo "> ${IGCM_debug_LenStack} : ${@}" >> ${StackFileLocation}/${StackFileName} |
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| 283 | |
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| 284 | # Save input list in an indexed array |
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| 285 | INPUTS=( $@ ) |
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| 286 | |
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| 287 | # Get timing information |
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| 288 | startTime_ms=$( IGCM_debug_getDate_ms ) |
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| 289 | |
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| 290 | # We add function call name on beginning of the stack |
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| 291 | set +A IGCM_debug_Stack -- ${1} ${IGCM_debug_Stack[*]} |
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| 292 | |
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| 293 | # Save timing in milliseconds in an indexed array |
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| 294 | set +A IGCM_debug_StackTiming -- ${startTime_ms} ${IGCM_debug_StackTiming[*]} |
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| 295 | |
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| 296 | # We include the "null" Args in the beginning of the StackArgs |
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| 297 | set +A IGCM_debug_StackArgs ${NULL_STR} ${IGCM_debug_StackArgs[*]} |
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| 298 | |
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| 299 | # Then, we shift StackArgs tabular |
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| 300 | if [ $# -gt 1 ]; then |
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| 301 | IGCM_debug_StackArgs[0]=$(echo ${INPUTS[*]:1} | sed -e "s/\ /,/g" ) |
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| 302 | fi |
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| 303 | |
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| 304 | if [ X${ActivateBigBro} = Xtrue ] ; then |
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| 305 | # RabbitMQ message code |
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| 306 | code=2000 |
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| 307 | # RabbitMQ message body |
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| 308 | Body=$( echo "{\"code\":\"${code}\",\"simuid\":\"${simuid}\",\"jobid\":\"${jobid}\",\"nesting\":\"${IGCM_debug_LenStack}\",\"command\":\"${INPUTS[*]}\",\"timestamp\":\"$( date +"%Y-%m-%d-%T" )\"}" ) |
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| 309 | # Fill the rabbitMQ queue |
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| 310 | IGCM_debug_sendAMQP |
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| 311 | fi |
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| 312 | |
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| 313 | # Increment LenStack |
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| 314 | (( IGCM_debug_LenStack = IGCM_debug_LenStack + 1 )) |
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| 315 | |
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| 316 | #IGCM_debug_CallStack |
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| 317 | fi |
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| 318 | } |
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| 319 | |
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| 320 | #D-#================================================================== |
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| 321 | #D-function IGCM_debug_PopStack |
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| 322 | #D-* Purpose: Pop a function name in the stack |
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| 323 | #D- |
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| 324 | function IGCM_debug_PopStack { |
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| 325 | if ( $DEBUG_debug ) ; then |
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| 326 | typeset i decal command arguments startTime_ms endTime_ms |
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| 327 | typeset instrumentation dest prefix |
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| 328 | # they are not typeset because they are send "by adress" to son functions |
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| 329 | # we unset them to avoid "memory effect" |
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| 330 | unset fileList source |
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| 331 | |
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| 332 | # INTRODUCE SIMPLE ERROR GENERATOR TO TEST SUPERVISOR |
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| 333 | # PROBABILITY ERROR IS 0.0001 PER COMMAND OR FUNCTION CALL |
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| 334 | # THERE ARE ~500 COMMAND OR FUNCTION CALL PER PERIOD |
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| 335 | if ( ${RandomError} ) ; then |
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| 336 | if [ $((RANDOM%10000)) -le 10 ] ; then |
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| 337 | IGCM_debug_Print 1 "Random error has been triggered" |
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| 338 | echo "RANDOM ERROR" >> ${StackFileLocation}/${StackFileName} |
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| 339 | ExitFlag=true |
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| 340 | fi |
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| 341 | fi |
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| 342 | |
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| 343 | if [ "${IGCM_debug_Stack[0]}" = "${1}" ]; then |
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| 344 | # Everything is cool |
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| 345 | |
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| 346 | # Get timing information |
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| 347 | endTime_ms=$( IGCM_debug_getDate_ms ) |
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| 348 | |
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| 349 | # Save Stack information before poping the stack |
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| 350 | command=${IGCM_debug_Stack[0]} |
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| 351 | |
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| 352 | # Go from comma separated (list) to space separated in an array |
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| 353 | set -A arguments $( echo ${IGCM_debug_StackArgs[0]} | sed -e "s/,/\ /g" ) |
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| 354 | |
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| 355 | # Save Stack information before poping the stack |
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| 356 | startTime_ms=${IGCM_debug_StackTiming[0]} |
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| 357 | |
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| 358 | # Pop the stack |
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| 359 | (( IGCM_debug_LenStack = IGCM_debug_LenStack - 1 )) |
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| 360 | set -A IGCM_debug_Stack -- ${IGCM_debug_Stack[*]:1} |
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| 361 | set -A IGCM_debug_StackArgs -- ${IGCM_debug_StackArgs[*]:1} |
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| 362 | set -A IGCM_debug_StackTiming -- ${IGCM_debug_StackTiming[*]:1} |
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| 363 | else |
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| 364 | echo 'IGCM_debug_Exit : stack is corrupted ! LenStack =' ${IGCM_debug_LenStack} |
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| 365 | IGCM_debug_Exit $@ |
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| 366 | fi |
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| 367 | |
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| 368 | # Special actions depending on command to prepare IGCM_debug_PrintInfosActions call |
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| 369 | # We are interested in: |
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| 370 | # 0. Which command performs the work |
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| 371 | # 1. Size of entity we are working with |
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| 372 | # 2. Where are we reading |
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| 373 | # 3. Where are we writing |
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| 374 | # 4. How long it took |
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| 375 | |
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| 376 | instrumentation=false |
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| 377 | |
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| 378 | case ${command} in |
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| 379 | # Classical copy (only files are given to IGCM_sys_Cp as options) |
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| 380 | IGCM_sys_Cp) |
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| 381 | instrumentation=true |
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| 382 | # All but the latest |
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| 383 | fileList=${arguments[*]:0:${#arguments[*]}-1} |
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| 384 | # just need the first file to get the directory |
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| 385 | source=${arguments[0]} |
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| 386 | # Nothing but the latest |
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| 387 | dest=${arguments[${#arguments[*]}-1]} |
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| 388 | # Size of file whose name are stored in a list |
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| 389 | entitySize=$( IGCM_debug_sizeOfTabContent fileList ${dest} ) |
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| 390 | ;; |
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| 391 | |
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| 392 | # Copy from archive machine or from buffer |
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| 393 | IGCM_sys_Get|IGCM_sys_GetBuffer) |
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| 394 | instrumentation=true |
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| 395 | if [ ${#arguments[*]} -eq 2 ] ; then |
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| 396 | source=${arguments[0]} |
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| 397 | dest=${arguments[1]} |
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| 398 | # Size of file whose name are stored in a variable |
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| 399 | entitySize=$( IGCM_debug_sizeOfTabContent source ${dest} ) |
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| 400 | elif ( [ ${#arguments[*]} -eq 3 ] && [ ${arguments[0]} = '/l' ] ) ; then |
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| 401 | # IGCM_sys_Get /l liste_file[*] /ccc/scratch/cont003/dsm/p86denv/RUN_DIR/985998_14754/ |
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| 402 | # Keep the array name hosting the all list |
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| 403 | eval set +A fileList \${${arguments[1]}} |
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| 404 | # just need the first file to get the directory |
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| 405 | source=${fileList[0]} |
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| 406 | dest=${arguments[2]} |
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| 407 | # Size of file whose name are stored in a list |
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| 408 | entitySize=$( IGCM_debug_sizeOfTabContent fileList[*] ${dest} ) |
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| 409 | elif [ [ ${#arguments[*]} -ge 3 ] ; then |
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| 410 | # All but the latest |
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| 411 | fileList=${arguments[*]:0:${#arguments[*]}-1} |
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| 412 | # just need the first file to get the directory |
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| 413 | source=${arguments[0]} |
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| 414 | # Nothing but the latest |
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| 415 | dest=${arguments[${#arguments[*]}-1]} |
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| 416 | # Size of file whose name are stored in a list |
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| 417 | entitySize=$( IGCM_debug_sizeOfTabContent fileList ${dest} ) |
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| 418 | fi |
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| 419 | ;; |
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| 420 | |
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| 421 | # Copy from compute node or copy to archive/buffer |
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| 422 | IGCM_sys_Get_Master|IGCM_sys_Get_Dir|IGCM_sys_Put_Out|IGCM_sys_PutBuffer_Out) |
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| 423 | instrumentation=true |
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| 424 | source=${arguments[0]} |
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| 425 | dest=${arguments[1]} |
|---|
| 426 | # Size of file whose name are stored in a variable |
|---|
| 427 | entitySize=$( IGCM_debug_sizeOfTabContent source ${dest} ) |
|---|
| 428 | ;; |
|---|
| 429 | |
|---|
| 430 | # Rebuild command |
|---|
| 431 | IGCM_sys_rebuild|IGCM_sys_rebuild_station) |
|---|
| 432 | instrumentation=true |
|---|
| 433 | # All but the first |
|---|
| 434 | fileList=${arguments[*]:1:${#arguments[*]}-1} |
|---|
| 435 | # just need a file to get the directory |
|---|
| 436 | source=${arguments[1]} |
|---|
| 437 | # Nothing but the first |
|---|
| 438 | dest=${arguments[0]} |
|---|
| 439 | # Size of file whose name are stored in a list |
|---|
| 440 | entitySize=$( IGCM_debug_sizeOfTabContent fileList ${dest} ) |
|---|
| 441 | ;; |
|---|
| 442 | |
|---|
| 443 | # NCO commands |
|---|
| 444 | IGCM_sys_ncrcat|IGCM_sys_ncecat|IGCM_sys_ncra|IGCM_sys_ncks|IGCM_sys_cdo) |
|---|
| 445 | # Example of what we want to catch : only filenames in those command lines |
|---|
| 446 | # IGCM_sys_ncrcat -O -v ${list_var_final_ncrcat} ${OUT_SE[*]} ${RESULT_SE} |
|---|
| 447 | # IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
|---|
| 448 | # IGCM_sys_ncrcat -p ${dir} ${liste_file_tmp} --output ${output} |
|---|
| 449 | # IGCM_sys_ncrcat -x -v ${list_var} -p ${dir} ${liste_file_tmp} --output ${output} |
|---|
| 450 | instrumentation=true |
|---|
| 451 | keepGoing=true |
|---|
| 452 | prefix=. |
|---|
| 453 | i=0 |
|---|
| 454 | while ( ${keepGoing} ) ; do |
|---|
| 455 | # the last one is not interesting |
|---|
| 456 | if [ ${i} -eq ${#arguments[*]}-1 ] ; then |
|---|
| 457 | keepGoing=false |
|---|
| 458 | # look after "-p" option. Path prefix is the following arguments |
|---|
| 459 | elif [ ${arguments[${i}]} = "-p" ] ; then |
|---|
| 460 | ((i = i + 1)) |
|---|
| 461 | prefix=${arguments[${i}]} |
|---|
| 462 | ((i = i + 1)) |
|---|
| 463 | elif [ ${i} -eq ${#arguments[*]}-1 ] ; then |
|---|
| 464 | keepGoing=false |
|---|
| 465 | # looking for files |
|---|
| 466 | elif [ -f ${prefix}/${arguments[${i}]} ] ; then |
|---|
| 467 | fileList="${fileList} ${prefix}/${arguments[${i}]}" |
|---|
| 468 | ((i = i + 1)) |
|---|
| 469 | # other options are not interesting |
|---|
| 470 | else |
|---|
| 471 | ((i = i + 1)) |
|---|
| 472 | fi |
|---|
| 473 | done |
|---|
| 474 | |
|---|
| 475 | # i value is at least 1 |
|---|
| 476 | # just need one file to get the directory |
|---|
| 477 | source=$( echo ${fileList} | gawk '{print $1}' ) |
|---|
| 478 | # Nothing but the latest |
|---|
| 479 | dest=${arguments[${#arguments[*]}-1]} |
|---|
| 480 | # Size of file whose name are stored in a list |
|---|
| 481 | entitySize=$( IGCM_debug_sizeOfTabContent fileList ${dest} ) |
|---|
| 482 | ;; |
|---|
| 483 | esac |
|---|
| 484 | |
|---|
| 485 | # Print information related to instrumentation |
|---|
| 486 | ( ${instrumentation} ) && IGCM_debug_PrintInfosActions ${command} ${entitySize} ${startTime_ms} ${endTime_ms} ${dest} ${source} |
|---|
| 487 | |
|---|
| 488 | # Only cosmetics : stack file |
|---|
| 489 | decal=0 |
|---|
| 490 | while [ ${decal} -lt ${IGCM_debug_LenStack} ]; do |
|---|
| 491 | printf ' ' >> ${StackFileLocation}/${StackFileName} |
|---|
| 492 | (( decal = decal + 1 )) |
|---|
| 493 | done |
|---|
| 494 | |
|---|
| 495 | if ( ${ExitFlag} ) ; then |
|---|
| 496 | # Inform the stack file |
|---|
| 497 | echo '!!! ExitFlag has been activated !!!' >> ${StackFileLocation}/${StackFileName} |
|---|
| 498 | |
|---|
| 499 | if [ X${ActivateBigBro} = Xtrue ] ; then |
|---|
| 500 | # RabbitMQ message code |
|---|
| 501 | code=9000 |
|---|
| 502 | # RabbitMQ message body |
|---|
| 503 | Body=$( echo "{\"code\":\"${code}\",\"simuid\":\"${simuid}\",\"jobid\":\"${jobid}\",\"status\":\"NOK\",\"out\":\"true\",\"nesting\":\"${IGCM_debug_LenStack}\",\"command\":\"${INPUTS[*]}\",\"timestamp\":\"$( date +"%Y-%m-%d-%T" )\"}" ) |
|---|
| 504 | # Fill the rabbitMQ queue |
|---|
| 505 | IGCM_debug_sendAMQP |
|---|
| 506 | fi |
|---|
| 507 | else |
|---|
| 508 | # Inform the stack file |
|---|
| 509 | echo "< ${IGCM_debug_LenStack} : ${@}" >> ${StackFileLocation}/${StackFileName} |
|---|
| 510 | if [ X${ActivateBigBro} = Xtrue ] ; then |
|---|
| 511 | # RabbitMQ message code |
|---|
| 512 | code=3000 |
|---|
| 513 | # RabbitMQ message body |
|---|
| 514 | Body=$( echo "{\"code\":\"${code}\",\"simuid\":\"${simuid}\",\"jobid\":\"${jobid}\",\"status\":\"OK\",\"out\":\"true\",\"nesting\":\"${IGCM_debug_LenStack}\",\"command\":\"${INPUTS[*]}\",\"timestamp\":\"$( date +"%Y-%m-%d-%T" )\"}" ) |
|---|
| 515 | # Fill the rabbitMQ queue |
|---|
| 516 | IGCM_debug_sendAMQP |
|---|
| 517 | fi |
|---|
| 518 | fi |
|---|
| 519 | |
|---|
| 520 | # Reset array if necessary |
|---|
| 521 | if [ ${IGCM_debug_LenStack} = 0 ]; then |
|---|
| 522 | #echo |
|---|
| 523 | #IGCM_debug_Print 3 "Clean stack array" |
|---|
| 524 | #echo |
|---|
| 525 | unset IGCM_debug_Stack |
|---|
| 526 | unset IGCM_debug_StackArgs |
|---|
| 527 | unset IGCM_debug_StackTiming |
|---|
| 528 | IGCM_debug_Stack[0]=${NULL_STR} |
|---|
| 529 | IGCM_debug_StackArgs[0]=${NULL_STR} |
|---|
| 530 | IGCM_debug_StackTiming[0]=${NULL_STR} |
|---|
| 531 | fi |
|---|
| 532 | fi |
|---|
| 533 | #IGCM_debug_CallStack |
|---|
| 534 | } |
|---|
| 535 | |
|---|
| 536 | #D-#================================================================== |
|---|
| 537 | #D-function IGCM_debug_ActivateBigBro |
|---|
| 538 | #D-* Purpose: switch rabbitMQ on |
|---|
| 539 | #D- |
|---|
| 540 | function IGCM_debug_ActivateBigBro { |
|---|
| 541 | IGCM_debug_PushStack "IGCM_debug_ActivateBigBro" |
|---|
| 542 | |
|---|
| 543 | if [ X${BigBrother} = Xtrue ] ; then |
|---|
| 544 | # ID to identify a simulation |
|---|
| 545 | simuid=${config_UserChoices_JobName}.${config_UserChoices_ExperimentName}.${config_UserChoices_SpaceName}.${config_UserChoices_TagName}.${LOGIN}.${CENTER}.${MASTER} |
|---|
| 546 | |
|---|
| 547 | # ID to identify a job. Several Jobs are needed to complete a simulation |
|---|
| 548 | jobid=${config_UserChoices_JobName}.${config_UserChoices_ExperimentName}.${config_UserChoices_SpaceName}.${config_UserChoices_TagName}.${LOGIN}.${CENTER}.${MASTER}.${CumulPeriod} |
|---|
| 549 | |
|---|
| 550 | # RabbitMQ message code |
|---|
| 551 | if ( ${FirstInitialize} ) ; then |
|---|
| 552 | code=0000 |
|---|
| 553 | else |
|---|
| 554 | code=1000 |
|---|
| 555 | fi |
|---|
| 556 | # RabbitMQ message body |
|---|
| 557 | Body=$( echo "{\"code\":\"${code}\",\"simuid\":\"${simuid}\",\"jobid\":\"${jobid}\",\"status\":\"OK\",\"out\":\"false\",\"nesting\":\"${IGCM_debug_LenStack}\",\"timestamp\":\"$( date +"%Y-%m-%d-%T" )\"}" ) |
|---|
| 558 | # Fill the rabbitMQ queue (specifying config.card must be send) |
|---|
| 559 | IGCM_debug_sendAMQP activate |
|---|
| 560 | |
|---|
| 561 | # Turn the flag on |
|---|
| 562 | ActivateBigBro=true |
|---|
| 563 | fi |
|---|
| 564 | IGCM_debug_PopStack "IGCM_debug_ActivateBigBro" |
|---|
| 565 | } |
|---|
| 566 | |
|---|
| 567 | #D-#================================================================== |
|---|
| 568 | #D-function IGCM_debug_Exit |
|---|
| 569 | #D-* Purpose: Print Call Stack and set ExitFlag to true |
|---|
| 570 | #D- |
|---|
| 571 | function IGCM_debug_Exit { |
|---|
| 572 | IGCM_debug_PushStack "IGCM_debug_Exit" |
|---|
| 573 | echo "IGCM_debug_Exit : " "${@}" |
|---|
| 574 | echo |
|---|
| 575 | echo "!!!!!!!!!!!!!!!!!!!!!!!!!!" |
|---|
| 576 | echo "!! ERROR TRIGGERED !!" |
|---|
| 577 | echo "!! EXIT FLAG SET !!" |
|---|
| 578 | echo "!------------------------!" |
|---|
| 579 | echo |
|---|
| 580 | IGCM_debug_CallStack |
|---|
| 581 | ExitFlag=true |
|---|
| 582 | IGCM_debug_PopStack "IGCM_debug_Exit" |
|---|
| 583 | } |
|---|
| 584 | |
|---|
| 585 | #D-#================================================== |
|---|
| 586 | #D-function IGCM_debug_Verif_Exit |
|---|
| 587 | #D-* Purpose: exit with number 1 if ExitFlag is true |
|---|
| 588 | #D- |
|---|
| 589 | function IGCM_debug_Verif_Exit { |
|---|
| 590 | if ( ${ExitFlag} ) ; then |
|---|
| 591 | # Plan to send an email here with IGCM_sys_SendMail |
|---|
| 592 | if [ X${TaskType} != Xchecking ] ; then |
|---|
| 593 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Fatal" |
|---|
| 594 | echo "IGCM_debug_Verif_Exit : Something wrong happened previously." |
|---|
| 595 | echo "IGCM_debug_Verif_Exit : ERROR and EXIT keyword will help find out where." |
|---|
| 596 | echo " EXIT THE JOB." |
|---|
| 597 | echo |
|---|
| 598 | IGCM_debug_CallStack |
|---|
| 599 | fi |
|---|
| 600 | |
|---|
| 601 | if [ X${ActivateBigBro} = Xtrue ] ; then |
|---|
| 602 | # RabbitMQ message code |
|---|
| 603 | code=9999 |
|---|
| 604 | # RabbitMQ message body |
|---|
| 605 | Body=$( echo "{\"code\":\"${code}\",\"simuid\":\"${simuid}\",\"jobid\":\"${jobid}\",\"status\":\"FATAL\",\"timestamp\":\"$( date +"%Y-%m-%d-%T" )\"}" ) |
|---|
| 606 | # Fill the rabbitMQ queue |
|---|
| 607 | IGCM_debug_sendAMQP |
|---|
| 608 | fi |
|---|
| 609 | |
|---|
| 610 | # Not sure about that one ... |
|---|
| 611 | if ( $DEBUG_debug ) ; then |
|---|
| 612 | echo "Your files on ${R_OUT} :" |
|---|
| 613 | IGCM_sys_Tree ${R_SAVE} |
|---|
| 614 | echo |
|---|
| 615 | fi |
|---|
| 616 | |
|---|
| 617 | # Mail notification |
|---|
| 618 | IGCM_sys_SendMail |
|---|
| 619 | |
|---|
| 620 | # And Good Bye |
|---|
| 621 | date |
|---|
| 622 | exit 1 |
|---|
| 623 | fi |
|---|
| 624 | } |
|---|
| 625 | |
|---|
| 626 | #D-#================================================== |
|---|
| 627 | #D-function IGCM_debug_Verif_Exit_Post |
|---|
| 628 | #D-* Purpose: exit with number 1 if ExitFlag is true for Post-treatment |
|---|
| 629 | #D- |
|---|
| 630 | function IGCM_debug_Verif_Exit_Post { |
|---|
| 631 | if ( ${ExitFlag} ) ; then |
|---|
| 632 | echo "IGCM_debug_Verif_Exit_Post : Something wrong happened." |
|---|
| 633 | # If SpaceName is PROD then we stop if post_processing fails |
|---|
| 634 | # Plan to send an email here with IGCM_sys_SendMail |
|---|
| 635 | if [ X${config_UserChoices_SpaceName} = XPROD ] ; then |
|---|
| 636 | echo " EXIT THE JOB." |
|---|
| 637 | echo |
|---|
| 638 | # Mail notification |
|---|
| 639 | #IGCM_sys_SendMailPost |
|---|
| 640 | # And Good Bye |
|---|
| 641 | date |
|---|
| 642 | exit 1 |
|---|
| 643 | else |
|---|
| 644 | echo "Either inside config.card the variable SpaceName is not in PROD" |
|---|
| 645 | echo "or inside the main Job the variable JobType is not in RUN mode" |
|---|
| 646 | echo " SO WE DO NOT EXIT THE JOB." |
|---|
| 647 | echo |
|---|
| 648 | date |
|---|
| 649 | fi |
|---|
| 650 | fi |
|---|
| 651 | } |
|---|
| 652 | |
|---|
| 653 | #D-#================================================================== |
|---|
| 654 | #D-function IGCM_debug_Print |
|---|
| 655 | #D-* Purpose: Print arguments according to a level of verbosity. |
|---|
| 656 | #D- |
|---|
| 657 | function IGCM_debug_Print |
|---|
| 658 | { |
|---|
| 659 | typeset level=$1 |
|---|
| 660 | shift |
|---|
| 661 | |
|---|
| 662 | if [ X"${1}" = X"-e" ]; then |
|---|
| 663 | typeset cmd_echo="echo -e" |
|---|
| 664 | shift |
|---|
| 665 | else |
|---|
| 666 | typeset cmd_echo="echo" |
|---|
| 667 | fi |
|---|
| 668 | |
|---|
| 669 | if [ ${level} -le ${Verbosity} ] ; then |
|---|
| 670 | typeset i |
|---|
| 671 | case "${level}" in |
|---|
| 672 | 1) for i in "$@" ; do |
|---|
| 673 | ${cmd_echo} $(date +"%Y-%m-%d %T") "--Debug1-->" ${i} |
|---|
| 674 | done ;; |
|---|
| 675 | 2) for i in "$@" ; do |
|---|
| 676 | ${cmd_echo} $(date +"%Y-%m-%d %T") "--------Debug2-->" ${i} |
|---|
| 677 | done ;; |
|---|
| 678 | 3) for i in "$@" ; do |
|---|
| 679 | ${cmd_echo} $(date +"%Y-%m-%d %T") "--------------Debug3-->" ${i} |
|---|
| 680 | done ;; |
|---|
| 681 | esac |
|---|
| 682 | fi |
|---|
| 683 | } |
|---|
| 684 | |
|---|
| 685 | #D-#================================================================== |
|---|
| 686 | #D-function IGCM_debug_PrintVariables |
|---|
| 687 | #D-* Purpose: Print arguments when match a pattern |
|---|
| 688 | #D- according to a level of verbosity. |
|---|
| 689 | function IGCM_debug_PrintVariables |
|---|
| 690 | { |
|---|
| 691 | typeset level=$1 |
|---|
| 692 | shift |
|---|
| 693 | |
|---|
| 694 | list=$( set | grep ^$1 | sed -e "s/'//g" ) |
|---|
| 695 | |
|---|
| 696 | if [ "X${list}" != X ] ; then |
|---|
| 697 | IGCM_debug_Print ${level} ${list} |
|---|
| 698 | fi |
|---|
| 699 | } |
|---|
| 700 | |
|---|
| 701 | #D-#================================================================== |
|---|
| 702 | #D-function IGCM_debug_PrintInfosActions |
|---|
| 703 | #D-* Purpose: Print information related to instrumentation |
|---|
| 704 | function IGCM_debug_PrintInfosActions |
|---|
| 705 | { |
|---|
| 706 | typeset actionType=$1 |
|---|
| 707 | typeset entitySize=$2 |
|---|
| 708 | typeset start_ms=$3 |
|---|
| 709 | typeset end_ms=$4 |
|---|
| 710 | |
|---|
| 711 | typeset dest=$5 |
|---|
| 712 | typeset source=$6 |
|---|
| 713 | |
|---|
| 714 | typeset diff_ms entitySizeKo entitySizeMo flux_Ko_ms flux_Ko_s flux_Mo_s |
|---|
| 715 | typeset name dirOut dirSource |
|---|
| 716 | |
|---|
| 717 | name="doNotKnow" |
|---|
| 718 | |
|---|
| 719 | diff_ms=$(( $end_ms - $start_ms )) |
|---|
| 720 | # echo "diff_ms=$diff_ms" |
|---|
| 721 | |
|---|
| 722 | entitySizeKo=$( echo ${entitySize} | gawk -F"|" '{print $1}' ) |
|---|
| 723 | # echo "entitySizeKo=$entitySizeKo" |
|---|
| 724 | entitySizeMo=$( echo ${entitySize} | gawk -F"|" '{print $2}' ) |
|---|
| 725 | |
|---|
| 726 | # flux en Ko / ms |
|---|
| 727 | flux_Ko_ms=$( echo "scale=6;${entitySizeKo}/${diff_ms}" | bc ) |
|---|
| 728 | # echo "flux_Ko_ms=$flux_Ko_ms" |
|---|
| 729 | |
|---|
| 730 | # flux en Ko / s |
|---|
| 731 | flux_Ko_s=$(( $flux_Ko_ms * 1000 )) |
|---|
| 732 | # echo "flux_Ko_s=$flux_Ko_s" |
|---|
| 733 | |
|---|
| 734 | # flux en Mo / s |
|---|
| 735 | flux_Mo_s=$( echo "scale=6;${flux_Ko_s}/1024" | bc ) |
|---|
| 736 | # echo "flux_Mo_s=$flux_Mo_s" |
|---|
| 737 | |
|---|
| 738 | if [ -d $dest ] ; then |
|---|
| 739 | dirOut=$( readlink -f ${dest} ) |
|---|
| 740 | else |
|---|
| 741 | dirOut=$( readlink -f $( dirname ${dest} ) ) |
|---|
| 742 | fi |
|---|
| 743 | |
|---|
| 744 | if [ -d $source ] ; then |
|---|
| 745 | dirSource=$( readlink -f ${source} ) |
|---|
| 746 | else |
|---|
| 747 | dirSource=$( readlink -f $( dirname ${source} ) ) |
|---|
| 748 | fi |
|---|
| 749 | |
|---|
| 750 | echo "==>act:${actionType}|sz:${entitySizeMo}|ms:${diff_ms}|fx(ko):${flux_Ko_s}|fx(mo):${flux_Mo_s}|nm:${name}|dirSource:${dirSource}|dirOut:${dirOut}" |
|---|
| 751 | } |
|---|
| 752 | |
|---|
| 753 | #D-#================================================================== |
|---|
| 754 | #D-function IGCM_debug_Check |
|---|
| 755 | #D- * Purpose: Check the present file by comparison with a reference file |
|---|
| 756 | function IGCM_debug_Check |
|---|
| 757 | { |
|---|
| 758 | #--------------------- |
|---|
| 759 | if [ ! -n "${libIGCM}" ] ; then |
|---|
| 760 | echo "Check libIGCM_debug ..........................................[ FAILED ]" |
|---|
| 761 | echo "--Error--> libIGCM variable is not defined" |
|---|
| 762 | exit 2 |
|---|
| 763 | fi |
|---|
| 764 | |
|---|
| 765 | #--------------------- |
|---|
| 766 | if [ ! -n "${Verbosity}" ] ; then |
|---|
| 767 | echo "Check libIGCM_debug ..........................................[ FAILED ]" |
|---|
| 768 | echo "--Error--> Verbosity variable is not defined" |
|---|
| 769 | exit 3 |
|---|
| 770 | fi |
|---|
| 771 | |
|---|
| 772 | #--------------------- |
|---|
| 773 | ${libIGCM}/libIGCM_debug/IGCM_debug_Test.ksh > /tmp/IGCM_debug_Test.$$.ref.failed 2>&1 |
|---|
| 774 | sleep 2 |
|---|
| 775 | |
|---|
| 776 | # Remove date stamp. |
|---|
| 777 | sed -e "s:[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9] [0-9][0-9]\:[0-9][0-9]\:[0-9][0-9] ::g" /tmp/IGCM_debug_Test.$$.ref.failed > /tmp/IGCM_debug_Test.$$.ref.failed.nodate |
|---|
| 778 | mv /tmp/IGCM_debug_Test.$$.ref.failed.nodate /tmp/IGCM_debug_Test.$$.ref.failed |
|---|
| 779 | |
|---|
| 780 | if diff /tmp/IGCM_debug_Test.$$.ref.failed ${libIGCM}/libIGCM_debug/IGCM_debug_Test.ref > /dev/null 2>&1 ; then |
|---|
| 781 | echo "Check libIGCM_debug ..............................................[ OK ]" |
|---|
| 782 | rm -f /tmp/IGCM_debug_Test.$$.ref.failed |
|---|
| 783 | else |
|---|
| 784 | echo "Check libIGCM_debug ..........................................[ FAILED ]" |
|---|
| 785 | echo "--Error--> Execution of ${libIGCM}/libIGCM_debug/IGCM_debug_Test.ksh" |
|---|
| 786 | echo " has produced the file IGCM_debug_Test.ref.failed" |
|---|
| 787 | echo " Please analyse differences with the reference file by typing:" |
|---|
| 788 | echo " diff IGCM_debug_Test.ref.failed ${libIGCM}/libIGCM_debug/IGCM_debug_Test.ref" |
|---|
| 789 | echo " Report errors to the author: Patrick.Brockmann@cea.fr" |
|---|
| 790 | cat /tmp/IGCM_debug_Test.$$.ref.failed |
|---|
| 791 | exit 4 |
|---|
| 792 | fi |
|---|
| 793 | #--------------------- |
|---|
| 794 | } |
|---|
