[2] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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| 4 | # Author: Sebastien Denvil, Martial Mancip |
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[373] | 5 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[2] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #======================================================================== |
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| 15 | function IGCM_comp_Initialize |
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| 16 | { |
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[544] | 17 | IGCM_debug_PushStack "IGCM_comp_Initialize" |
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[2] | 18 | |
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[778] | 19 | # Debug Print : |
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[544] | 20 | echo |
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| 21 | IGCM_debug_Print 1 "IGCM_comp_Initialize" |
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| 22 | echo |
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[2] | 23 | |
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[1244] | 24 | typeset comp compname comptagname auxprint card_UserChoices first_option option i j |
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[544] | 25 | for comp in ${config_ListOfComponents[*]} ; do |
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[2] | 26 | |
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[902] | 27 | # Define component |
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[544] | 28 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card ListOfComponents ${comp} |
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| 29 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 30 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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[457] | 31 | |
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[615] | 32 | # Debug Print |
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| 33 | IGCM_debug_Print 1 "Initialize ${comp} : ${compname} component." |
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| 34 | |
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[1244] | 35 | # ${compname}.card PATH |
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[544] | 36 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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[2] | 37 | |
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[544] | 38 | # Manage component executable |
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| 39 | IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/config.card Executable ${comp} |
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[2] | 40 | |
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[849] | 41 | # Define all options in section [comp] |
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| 42 | IGCM_debug_Print 3 " DefineArrayFromSection : ${comp}" |
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| 43 | IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card ${comp} |
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| 44 | eval config_comp=\${config_${comp}[*]} > /dev/null 2>&1 |
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| 45 | for option in ${config_comp[*]} ; do |
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[902] | 46 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} ${option} |
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[849] | 47 | done |
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| 48 | IGCM_debug_Print 3 " Found in section config_${comp} : ${config_comp[*]} " |
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| 49 | |
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[544] | 50 | # Debug Print : |
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| 51 | eval auxprint=\${config_${comp}_WriteFrequency} |
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| 52 | IGCM_debug_Print 1 "Write frequency for ${compname} : ${auxprint} " |
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| 53 | #2> /dev/null |
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[2] | 54 | |
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[544] | 55 | # Debug Print : |
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| 56 | IGCM_debug_Print 2 "Initialize following component library" |
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[522] | 57 | |
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[544] | 58 | # Source drivers in directory DRIVER if it exist |
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| 59 | # else source them from directory COMP |
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| 60 | if [ -d ${SUBMIT_DIR}/DRIVER ] ; then |
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| 61 | IGCM_debug_Print 2 ${SUBMIT_DIR}/DRIVER/${compname}.driver |
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| 62 | # Source component library |
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| 63 | . ${SUBMIT_DIR}/DRIVER/${compname}.driver |
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| 64 | else |
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| 65 | IGCM_debug_Print 2 ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 66 | # Source component library |
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| 67 | . ${SUBMIT_DIR}/COMP/${compname}.driver |
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| 68 | fi |
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| 69 | IGCM_debug_Print 3 "With tag : ${comptagname}" |
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[2] | 70 | |
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[544] | 71 | # Debug Print |
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| 72 | IGCM_debug_Print 3 "Initialize ${comp} output directory." |
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[2] | 73 | |
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[544] | 74 | # Define ARCHIVED Dirs |
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| 75 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 76 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}} |
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[2] | 77 | |
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[544] | 78 | eval R_OUT_${comp}_O=\${R_OUT_${comp}}/Output |
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| 79 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_O} |
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[2] | 80 | |
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[1375] | 81 | eval R_OUT_${comp}_A=\${R_OUT_${comp}}/Analyse |
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| 82 | eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_A} |
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| 83 | |
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[544] | 84 | eval R_OUT_${comp}_R=\${R_OUT_${comp}}/Restart |
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[804] | 85 | [ ${config_Post_PackFrequency} = NONE ] && eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_R} |
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[2] | 86 | |
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[544] | 87 | eval R_OUT_${comp}_D=\${R_OUT_${comp}}/Debug |
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[804] | 88 | [ ${config_Post_PackFrequency} = NONE ] && eval IGCM_sys_MkdirArchive \${R_OUT_${comp}_D} |
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[2] | 89 | |
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[544] | 90 | eval R_OUT_${comp}_O_H=\${R_OUT_${comp}_O}/HF |
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| 91 | eval R_OUT_${comp}_O_D=\${R_OUT_${comp}_O}/DA |
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| 92 | eval R_OUT_${comp}_O_M=\${R_OUT_${comp}_O}/MO |
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| 93 | eval R_OUT_${comp}_O_Y=\${R_OUT_${comp}_O}/YE |
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| 94 | |
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[1375] | 95 | eval R_OUT_${comp}_A_H=\${R_OUT_${comp}_A}/TS_HF |
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| 96 | eval R_OUT_${comp}_A_D=\${R_OUT_${comp}_A}/TS_DA |
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| 97 | eval R_OUT_${comp}_A_M=\${R_OUT_${comp}_A}/TS_MO |
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| 98 | eval R_OUT_${comp}_A_Y=\${R_OUT_${comp}_A}/TS_YE |
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| 99 | |
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[544] | 100 | # Define BUFFERED Dirs |
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[1022] | 101 | if ( [ ! ${config_Post_PackFrequency} = NONE ] || [ X${config_UserChoices_SpaceName} = XTEST ] ) ; then |
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[804] | 102 | eval R_BUF_${comp}=${R_BUFR}/${comp} |
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| 103 | eval IGCM_sys_Mkdir \${R_BUF_${comp}} |
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[544] | 104 | |
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[804] | 105 | eval R_BUF_${comp}_O=\${R_BUF_${comp}}/Output |
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| 106 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_O} |
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[544] | 107 | |
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[1375] | 108 | eval R_BUF_${comp}_A=\${R_BUF_${comp}}/Analyse |
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| 109 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_A} |
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| 110 | |
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[804] | 111 | eval R_BUF_${comp}_R=\${R_BUF_${comp}}/Restart |
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| 112 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_R} |
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[544] | 113 | |
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[804] | 114 | eval R_BUF_${comp}_D=\${R_BUF_${comp}}/Debug |
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| 115 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_D} |
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[544] | 116 | |
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[804] | 117 | eval R_BUF_${comp}_O_H=\${R_BUF_${comp}_O}/HF |
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| 118 | eval R_BUF_${comp}_O_D=\${R_BUF_${comp}_O}/DA |
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| 119 | eval R_BUF_${comp}_O_M=\${R_BUF_${comp}_O}/MO |
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| 120 | eval R_BUF_${comp}_O_Y=\${R_BUF_${comp}_O}/YE |
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[1375] | 121 | |
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| 122 | eval R_BUF_${comp}_A_H=\${R_BUF_${comp}_A}/TS_HF |
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| 123 | eval R_BUF_${comp}_A_D=\${R_BUF_${comp}_A}/TS_DA |
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| 124 | eval R_BUF_${comp}_A_M=\${R_BUF_${comp}_A}/TS_MO |
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| 125 | eval R_BUF_${comp}_A_Y=\${R_BUF_${comp}_A}/TS_YE |
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[804] | 126 | fi |
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[544] | 127 | |
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| 128 | # Read UserChoices section of component card |
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| 129 | IGCM_debug_Print 2 "DefineArrayFromSection : ${compname}_UserChoices ${card}" |
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| 130 | IGCM_card_DefineArrayFromSection ${card} UserChoices |
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| 131 | eval first_option=\${${compname}_UserChoices[0]} > /dev/null 2>&1 |
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[804] | 132 | |
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[544] | 133 | # If section is not empty we define corresponding variables |
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| 134 | if [ X${first_option} != X"Error:" ] ; then |
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| 135 | if [ X${card_UserChoices[0]} != X ] ; then |
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[778] | 136 | unset card_UserChoices |
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[544] | 137 | fi |
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[833] | 138 | eval set +A card_UserChoices -- \${${compname}_UserChoices[*]} > /dev/null 2>&1 |
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[544] | 139 | IGCM_debug_Print 3 "${compname}_UserChoices_values:" |
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| 140 | for option in ${card_UserChoices[*]} ; do |
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[778] | 141 | IGCM_card_DefineVariableFromOption ${card} UserChoices ${option} |
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| 142 | eval IGCM_debug_Print 3 "${option}=\${${compname}_UserChoices_${option}}" |
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[544] | 143 | done |
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| 144 | fi |
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| 145 | |
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| 146 | # Read and Build Output File stuff |
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| 147 | IGCM_debug_Print 2 "DefineArrayFromOption : ${compname}_OutputFiles ${card}" |
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| 148 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 149 | ListFilesName=${compname}_OutputFiles_List |
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| 150 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 151 | # |
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| 152 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 153 | # |
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| 154 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 155 | # |
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| 156 | # INITIALISATION |
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| 157 | # |
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| 158 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 159 | # |
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| 160 | i=2 |
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| 161 | # |
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| 162 | until [ $i -ge $NbFiles ]; do |
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[778] | 163 | # |
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| 164 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 165 | # |
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| 166 | if [ X${flag_post} != XNONE ] ; then |
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| 167 | # |
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[544] | 168 | # First of all |
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| 169 | # |
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[778] | 170 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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[1151] | 171 | # This section is mandatory |
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| 172 | if [ "X$( eval echo \${${compname}_${flag_post}[@]} )" = "X" ] ; then |
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| 173 | IGCM_debug_Print 1 "IGCM_card_DefineArrayFromSection ${card} ${flag_post}" |
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| 174 | IGCM_debug_Exit "${flag_post} section do not exist in ${card}. Please check your card." |
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| 175 | IGCM_debug_Verif_Exit |
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| 176 | fi |
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[1375] | 177 | |
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| 178 | # Do have seasonal average enabled |
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| 179 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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[778] | 180 | if [ $( eval echo \${${compname}_${flag_post}_Seasonal} ) = ON ] ; then |
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| 181 | Seasonal=true |
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| 182 | fi |
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| 183 | |
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[1375] | 184 | # Read the Patches Option |
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[778] | 185 | IGCM_card_DefineArrayFromOption ${card} ${flag_post} Patches |
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| 186 | fi |
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| 187 | (( i=i+3 )) |
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[544] | 188 | done |
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| 189 | fi |
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| 190 | # Debug Print |
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| 191 | IGCM_debug_Print 3 "Initialize ${compname} with driver." |
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| 192 | # INIT component |
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| 193 | ${comp}_Initialize |
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| 194 | echo |
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| 195 | done |
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[2] | 196 | |
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[544] | 197 | IGCM_debug_PopStack "IGCM_comp_Initialize" |
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[2] | 198 | } |
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| 199 | |
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| 200 | #======================================================================= |
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| 201 | function IGCM_comp_PrepareDeletedFiles |
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| 202 | { |
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[544] | 203 | IGCM_debug_PushStack "IGCM_comp_PrepareDeletedFiles" $@ |
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[778] | 204 | |
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[544] | 205 | if [ X${2} != X. ] ; then |
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| 206 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${2} ) > /dev/null 2>&1 |
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| 207 | else |
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| 208 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=$( basename ${1} ) > /dev/null 2>&1 |
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| 209 | fi |
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[2] | 210 | |
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[544] | 211 | IGCM_debug_PopStack "IGCM_comp_PrepareDeletedFiles" |
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[2] | 212 | } |
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| 213 | |
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| 214 | #======================================================================= |
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[1338] | 215 | function IGCM_comp_PrepareXiosFiles |
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| 216 | { |
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| 217 | IGCM_debug_PushStack "IGCM_comp_PrepareXiosFiles" $@ |
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| 218 | |
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| 219 | typeset file |
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| 220 | [ X${2} != X. ] && file=$( basename ${2} ) || file=$( basename ${1} ) |
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| 221 | |
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| 222 | if [ $( echo ${file} | grep "^field_def_" | wc -l ) = 1 ] ; then |
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| 223 | eval FieldDef[${#FieldDef[@]}]=${file} > /dev/null 2>&1 |
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| 224 | fi |
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| 225 | if [ $( echo ${file} | grep "^file_def_" | wc -l ) = 1 ] ; then |
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| 226 | eval FileDef[${#FileDef[@]}]=${file} > /dev/null 2>&1 |
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| 227 | fi |
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[1375] | 228 | if [ $( echo ${file} | grep "^timeseries_def_" | wc -l ) = 1 ] ; then |
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| 229 | eval FileDef[${#FileDef[@]}]=${file} > /dev/null 2>&1 |
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| 230 | fi |
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[1338] | 231 | |
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| 232 | IGCM_debug_PopStack "IGCM_comp_PrepareXiosFiles" |
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| 233 | } |
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| 234 | |
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| 235 | #======================================================================= |
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[2] | 236 | function IGCM_comp_GetInputInitialStateFiles |
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| 237 | { |
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[544] | 238 | IGCM_debug_PushStack "IGCM_comp_GetInputInitialStateFiles" |
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[2] | 239 | |
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[544] | 240 | # Debug Print : |
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| 241 | echo |
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| 242 | IGCM_debug_Print 1 "IGCM_comp_GetInputInitialStateFiles" |
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| 243 | echo |
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[2] | 244 | |
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[902] | 245 | # Only the first time step need InitialStateFiles |
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[544] | 246 | # otherwise it's BoundaryConditions |
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| 247 | if ( ${FirstInitialize} ) ; then |
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[902] | 248 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
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| 249 | typeset file_in_ file_in file_out_ file_out do_init |
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[544] | 250 | for comp in ${config_ListOfComponents[*]} ; do |
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| 251 | # Initialize |
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| 252 | do_init="y" |
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| 253 | # Do we need to bring initial state file for this component |
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| 254 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
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[778] | 255 | eval do_init="n" |
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[544] | 256 | else |
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[778] | 257 | # Read component Restarts parameters |
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| 258 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
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| 259 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
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| 260 | if [ "${do_start}" = "y" ] ; then |
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| 261 | do_init="n" |
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| 262 | else |
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| 263 | do_init="y" |
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| 264 | fi |
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[544] | 265 | fi |
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[2] | 266 | |
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[544] | 267 | if [ "${do_init}" = "y" ] ; then |
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[902] | 268 | # Define component |
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[778] | 269 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 270 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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[2] | 271 | |
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[778] | 272 | # Debug Print : |
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| 273 | IGCM_debug_Print 3 "Initialisation files ${compname}" |
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[2] | 274 | |
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[778] | 275 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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[2] | 276 | |
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[778] | 277 | IGCM_card_DefineArrayFromOption ${card} InitialStateFiles List |
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| 278 | ListFilesName=${compname}_InitialStateFiles_List |
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[2] | 279 | |
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[778] | 280 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 281 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 282 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 283 | (( i=0 )) |
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| 284 | until [ $i -ge $NbFiles ]; do |
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| 285 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 286 | eval file_in=${file_in_} |
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| 287 | (( i_ = i+1 )) |
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| 288 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 289 | eval file_out=${file_out_} |
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[2] | 290 | |
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[778] | 291 | IGCM_sys_IsFileArchived ${file_in} |
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| 292 | if [ $? = 0 ] ; then |
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| 293 | IGCM_sys_Get ${file_in} ${file_out} |
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| 294 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
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| 295 | else |
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| 296 | IGCM_sys_Cp ${file_in} ${file_out} |
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| 297 | fi |
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| 298 | (( i=i+2 )) |
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| 299 | done |
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| 300 | fi |
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[544] | 301 | fi |
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| 302 | done |
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| 303 | fi |
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| 304 | IGCM_debug_PopStack "IGCM_comp_GetInputInitialStateFiles" |
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[2] | 305 | } |
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| 306 | |
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| 307 | #======================================================================= |
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[247] | 308 | # Definition of Smooth modulo function |
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[902] | 309 | # usage : |
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[247] | 310 | # IGCM_SmoothModulo StringModulo value |
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| 311 | # |
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| 312 | # StringModulo : A string of min max and modulo like definition of Scilab vectors. |
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| 313 | # [min]:[modulo:][max] |
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| 314 | # where : |
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[902] | 315 | # [] value are optionnals; |
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[247] | 316 | # empty min equal 1 |
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| 317 | # empty max equal infinity |
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| 318 | # modulo not given or empty equal 1 |
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| 319 | # empty string or just ':' equal always. |
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| 320 | # |
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| 321 | # value : the value to test with the definition |
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| 322 | # |
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[902] | 323 | # return : true(1)/false(0) |
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[247] | 324 | function IGCM_SmoothModulo |
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| 325 | { |
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[544] | 326 | IGCM_debug_PushStack "IGCM_SmoothModulo" |
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| 327 | typeset defVector ModValue |
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[247] | 328 | |
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[544] | 329 | eval set +A defVector -- $( echo "${1}" | \ |
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| 330 | gawk -F ':' '{print ($1 == "" ? 1 : $1) " " (NF==3 ? ($2 == "" ? 1 : $2) : 1) " " (NF==3 ? ($3 == "" ? -1 : $3) : ($2 == "" ? -1 : $2))}' ) |
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[247] | 331 | |
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[544] | 332 | # Save Smooth Min and Max. Needed to call IGCM_sys_Get when appropriate |
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| 333 | arr[1]=${defVector[0]} |
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| 334 | arr[2]=${defVector[2]} |
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[412] | 335 | |
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[902] | 336 | # Test limits : |
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| 337 | # ${defVector[0]} <= ${2} <= ${defVector[2]} |
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[544] | 338 | # or ${defVector[2]} == -1 |
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| 339 | if ( [ ${2} -ge ${defVector[0]} ] && ( [ ${2} -le ${defVector[2]} ] || [ ${defVector[2]} -lt 0 ] ) ) ; then |
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| 340 | # Test modulo |
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| 341 | ModValue=$( expr \( ${2} - ${defVector[0]} \) % ${defVector[1]} ) |
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| 342 | if [ ${ModValue} -eq 0 ] ; then |
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| 343 | arr[3]=true |
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| 344 | echo ${arr[@]} |
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| 345 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 346 | return 1 |
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[247] | 347 | else |
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[544] | 348 | arr[3]=false |
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| 349 | echo ${arr[@]} |
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| 350 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 351 | return 0 |
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[247] | 352 | fi |
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[544] | 353 | else |
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| 354 | arr[3]=false |
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| 355 | echo ${arr[@]} |
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| 356 | IGCM_debug_PopStack "IGCM_SmoothModulo" |
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| 357 | return 0 |
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| 358 | fi |
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[247] | 359 | } |
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| 360 | |
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| 361 | #======================================================================= |
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| 362 | function IGCM_comp_GetInputSmoothFiles |
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| 363 | { |
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[544] | 364 | IGCM_debug_PushStack "IGCM_comp_GetInputSmoothFiles" |
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[247] | 365 | |
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[544] | 366 | # Debug Print : |
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| 367 | echo |
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| 368 | IGCM_debug_Print 1 "IGCM_comp_GetInputSmoothFiles" |
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| 369 | echo |
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[247] | 370 | |
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[544] | 371 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles j i i_ i__ |
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| 372 | typeset file_in_ file_in file_out_ file_out ret SmoothDef aux val |
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[247] | 373 | |
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[544] | 374 | for comp in ${config_ListOfComponents[*]} ; do |
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| 375 | # Define component |
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| 376 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 377 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
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[247] | 378 | |
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[544] | 379 | # Debug Print : |
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| 380 | IGCM_debug_Print 3 "Smooth files ${compname}" |
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[247] | 381 | |
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[544] | 382 | card=${SUBMIT_DIR}/COMP/${compname}.card |
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[247] | 383 | |
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[544] | 384 | IGCM_card_DefineArrayFromOption ${card} SmoothFiles List |
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| 385 | ListFilesName=${compname}_SmoothFiles_List |
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| 386 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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[247] | 387 | |
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[544] | 388 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != X"Section" ] ) ; then |
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| 389 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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[247] | 390 | |
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[544] | 391 | (( i=0 )) |
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| 392 | until [ $i -ge $NbFiles ]; do |
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[778] | 393 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 394 | eval file_in=${file_in_} |
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| 395 | (( i_ = i+1 )) |
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| 396 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 397 | eval file_out=${file_out_} |
---|
[247] | 398 | |
---|
[778] | 399 | # define CumulPeriod definition for this file |
---|
| 400 | (( i__ = i+2 )) |
---|
| 401 | eval SmoothDef=\${${ListFilesName}[$i__]} |
---|
| 402 | IGCM_debug_Print 3 " ${file_in} ${SmoothDef}" |
---|
| 403 | aux=$( IGCM_SmoothModulo ${SmoothDef} ${CumulPeriod} ) |
---|
| 404 | j=1 |
---|
| 405 | for val in ${aux} ; do |
---|
| 406 | [ ${j} -eq 1 ] && SmoothMin=${val} |
---|
| 407 | [ ${j} -eq 2 ] && SmoothMax=${val} |
---|
| 408 | [ ${j} -eq 3 ] && ret=${val} |
---|
| 409 | (( j=j+1 )) |
---|
| 410 | done |
---|
| 411 | [ ${SmoothMax} -eq -1 ] && SmoothMax=${CumulPeriod} |
---|
| 412 | if ( [ X${ret} = Xtrue ] || ( [ ${Period} -eq 1 ] && [ ${CumulPeriod} -ge ${SmoothMin} ] && [ ${CumulPeriod} -le ${SmoothMax} ] ) ) ; then |
---|
[548] | 413 | |
---|
[778] | 414 | IGCM_sys_IsFileArchived ${file_in} |
---|
| 415 | if [ $? = 0 ] ; then |
---|
| 416 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 417 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 418 | else |
---|
| 419 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 420 | fi |
---|
| 421 | fi |
---|
| 422 | (( i=i+3 )) |
---|
[544] | 423 | done |
---|
| 424 | fi |
---|
| 425 | done |
---|
[778] | 426 | |
---|
[544] | 427 | IGCM_debug_PopStack "IGCM_comp_GetInputSmoothFiles" |
---|
[247] | 428 | } |
---|
| 429 | |
---|
| 430 | #======================================================================= |
---|
[2] | 431 | function IGCM_comp_GetInputBoundaryFiles |
---|
| 432 | { |
---|
[544] | 433 | IGCM_debug_PushStack "IGCM_comp_GetInputBoundaryFiles" |
---|
[2] | 434 | |
---|
[544] | 435 | # Debug Print : |
---|
| 436 | echo |
---|
| 437 | IGCM_debug_Print 1 "IGCM_comp_GetInputBoundaryFiles" |
---|
| 438 | echo |
---|
[2] | 439 | |
---|
[902] | 440 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
---|
| 441 | typeset file_in_ file_in file_out_ file_out |
---|
[2] | 442 | |
---|
[544] | 443 | if [ ${Period} = 1 ]; then |
---|
| 444 | ListFixBoundary=" " |
---|
| 445 | fi |
---|
[2] | 446 | |
---|
[544] | 447 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[2] | 448 | |
---|
[544] | 449 | # Define component |
---|
| 450 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 451 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 452 | |
---|
[544] | 453 | # Debug Print : |
---|
| 454 | IGCM_debug_Print 3 "Boundary files ${compname}" |
---|
[2] | 455 | |
---|
[544] | 456 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
[2] | 457 | |
---|
[544] | 458 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles List |
---|
| 459 | ListFilesName=${compname}_BoundaryFiles_List |
---|
| 460 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 461 | |
---|
[544] | 462 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 463 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 464 | |
---|
[544] | 465 | (( i=0 )) |
---|
| 466 | until [ $i -ge $NbFiles ]; do |
---|
[778] | 467 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 468 | eval file_in=${file_in_} |
---|
| 469 | (( i_ = i+1 )) |
---|
| 470 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 471 | eval file_out=${file_out_} |
---|
[2] | 472 | |
---|
[778] | 473 | IGCM_sys_IsFileArchived ${file_in} |
---|
| 474 | if [ $? = 0 ] ; then |
---|
| 475 | IGCM_sys_Get ${file_in} ${file_out} |
---|
[809] | 476 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[778] | 477 | else |
---|
| 478 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 479 | fi |
---|
[2] | 480 | |
---|
[778] | 481 | (( i=i+2 )) |
---|
[544] | 482 | done |
---|
| 483 | fi |
---|
[2] | 484 | |
---|
[544] | 485 | # Get non deleted files |
---|
| 486 | if [ ${Period} = 1 ]; then |
---|
[2] | 487 | |
---|
[544] | 488 | IGCM_card_DefineArrayFromOption ${card} BoundaryFiles ListNonDel |
---|
| 489 | ListFilesName=${compname}_BoundaryFiles_ListNonDel |
---|
| 490 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[778] | 491 | |
---|
[544] | 492 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
[778] | 493 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 494 | |
---|
[778] | 495 | (( i=0 )) |
---|
| 496 | until [ $i -ge $NbFiles ]; do |
---|
| 497 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 498 | eval file_in=${file_in_} |
---|
| 499 | (( i_ = i+1 )) |
---|
| 500 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 501 | eval file_out=${file_out_} |
---|
[2] | 502 | |
---|
[778] | 503 | IGCM_sys_IsFileArchived ${file_in} |
---|
| 504 | if [ $? = 0 ] ; then |
---|
| 505 | IGCM_sys_Get ${file_in} ${file_out} |
---|
| 506 | #IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
| 507 | else |
---|
| 508 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
| 509 | fi |
---|
[2] | 510 | |
---|
[778] | 511 | if [ X${file_out} != X. ] ; then |
---|
| 512 | ListFixBoundary=${ListFixBoundary}" "${file_out} |
---|
| 513 | else |
---|
| 514 | ListFixBoundary=${ListFixBoundary}" "$( basename ${file_in} ) |
---|
| 515 | fi |
---|
| 516 | |
---|
| 517 | (( i=i+2 )) |
---|
| 518 | done |
---|
[544] | 519 | fi |
---|
| 520 | fi |
---|
| 521 | done |
---|
[778] | 522 | |
---|
[544] | 523 | IGCM_debug_PopStack "IGCM_comp_GetInputBoundaryFiles" |
---|
[2] | 524 | } |
---|
| 525 | |
---|
| 526 | #======================================================================= |
---|
| 527 | function IGCM_comp_DelFixeBoundaryFiles |
---|
| 528 | { |
---|
[544] | 529 | IGCM_debug_PushStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
[2] | 530 | |
---|
[544] | 531 | # Debug Print : |
---|
| 532 | echo |
---|
| 533 | IGCM_debug_Print 1 "IGCM_comp_DelFixeBoundaryFiles" |
---|
| 534 | echo |
---|
[2] | 535 | |
---|
[544] | 536 | ls -l ${ListFixBoundary} |
---|
| 537 | rm -f ${ListFixBoundary} |
---|
[2] | 538 | |
---|
[544] | 539 | IGCM_debug_PopStack "IGCM_comp_DelFixeBoundaryFiles" |
---|
[2] | 540 | } |
---|
| 541 | |
---|
| 542 | #======================================================================= |
---|
| 543 | function IGCM_comp_GetInputParametersFiles |
---|
| 544 | { |
---|
[544] | 545 | IGCM_debug_PushStack "IGCM_comp_GetInputParametersFiles" |
---|
[2] | 546 | |
---|
[544] | 547 | # Debug Print : |
---|
| 548 | echo |
---|
| 549 | IGCM_debug_Print 1 "IGCM_comp_GetInputParametersFiles" |
---|
| 550 | echo |
---|
[2] | 551 | |
---|
[544] | 552 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ file_in file_out |
---|
| 553 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[902] | 554 | # Define component |
---|
[544] | 555 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 556 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 557 | |
---|
[1338] | 558 | # Initialize array hosting file_def and field_def files to check and/or modify |
---|
| 559 | unset FieldDef |
---|
| 560 | unset FileDef |
---|
| 561 | |
---|
[544] | 562 | # Debug Print : |
---|
| 563 | IGCM_debug_Print 3 "Parameters ${compname}" |
---|
[2] | 564 | |
---|
[778] | 565 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
[2] | 566 | |
---|
[544] | 567 | IGCM_card_DefineArrayFromOption ${card} ParametersFiles List |
---|
| 568 | ListFilesName=${compname}_ParametersFiles_List |
---|
| 569 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 570 | |
---|
[544] | 571 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 572 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 573 | |
---|
[544] | 574 | (( i=0 )) |
---|
| 575 | until [ $i -ge $NbFiles ]; do |
---|
[778] | 576 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 577 | eval file_in=${file_in_} |
---|
| 578 | (( i_ = i+1 )) |
---|
| 579 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
[902] | 580 | eval file_out=${file_out_} |
---|
[2] | 581 | |
---|
[902] | 582 | IGCM_sys_Cp ${file_in} ${file_out} |
---|
[778] | 583 | IGCM_comp_PrepareDeletedFiles ${file_in} ${file_out} |
---|
[1338] | 584 | IGCM_comp_PrepareXiosFiles ${file_in} ${file_out} |
---|
[2] | 585 | |
---|
[778] | 586 | (( i=i+2 )) |
---|
[544] | 587 | done |
---|
| 588 | fi |
---|
[1338] | 589 | |
---|
| 590 | if [ ${#FileDef[@]} -ne 0 ] ; then |
---|
| 591 | # Check XMLs coherency now |
---|
[1339] | 592 | IGCM_debug_Print 1 "${libIGCM}/libIGCM_post/xios_parser.py check --field ${FieldDef[*]} --file ${FileDef[*]}" |
---|
| 593 | ${libIGCM}/libIGCM_post/xios_parser.py check --field ${FieldDef[*]} --file ${FileDef[*]} |
---|
[1338] | 594 | if [ $? = 0 ] ; then |
---|
[1339] | 595 | IGCM_debug_Print 1 "${compname} XIOS XMLs are consistent" |
---|
[1338] | 596 | else |
---|
[1373] | 597 | IGCM_debug_Print 1 "${compname} XIOS XMLs ARE NOT consistent" |
---|
| 598 | if [ X${config_Post_ParserXIOS} = XTRUE ] ; then |
---|
| 599 | IGCM_debug_Print 1 "Try to fix it:" |
---|
| 600 | IGCM_debug_Print 3 "${libIGCM}/libIGCM_post/xios_parser.py -v modify --field ${FieldDef[*]} --file ${FileDef[*]}" |
---|
| 601 | ${libIGCM}/libIGCM_post/xios_parser.py -vv modify --field ${FieldDef[*]} --file ${FileDef[*]} |
---|
| 602 | [ $? != 0 ] && IGCM_debug_Exit "Failed to fix XIOS xml files for ${compname}" |
---|
| 603 | fi |
---|
[1338] | 604 | fi |
---|
| 605 | fi |
---|
[544] | 606 | done |
---|
[2] | 607 | |
---|
[544] | 608 | IGCM_debug_PopStack "IGCM_comp_GetInputParametersFiles" |
---|
[2] | 609 | } |
---|
| 610 | |
---|
| 611 | #======================================================================= |
---|
| 612 | function IGCM_comp_GetInputRestartFiles |
---|
| 613 | { |
---|
[544] | 614 | IGCM_debug_PushStack "IGCM_comp_GetInputRestartFiles" |
---|
[2] | 615 | |
---|
[544] | 616 | # Debug Print : |
---|
| 617 | echo |
---|
| 618 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles" |
---|
| 619 | echo |
---|
[2] | 620 | |
---|
[590] | 621 | typeset Date_tmp Date_r Path_r do_start CompOldName Path_OUT Path_BUF |
---|
| 622 | typeset Buffered Archived Tared PotentialTarFile IsMatching TarFileFound |
---|
[902] | 623 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles i i_ |
---|
[544] | 624 | typeset file_in file_out file_in_ file_out_ file_in_Name |
---|
| 625 | typeset -Z4 j4 |
---|
[821] | 626 | #BASH declare j4 |
---|
[2] | 627 | |
---|
[778] | 628 | IsMatching="" |
---|
| 629 | |
---|
[544] | 630 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[902] | 631 | # Define component |
---|
[544] | 632 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 633 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
| 634 | # |
---|
| 635 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
| 636 | # |
---|
| 637 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 638 | ListFilesName=${compname}_RestartFiles_List |
---|
| 639 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 640 | |
---|
[544] | 641 | # Debug Print : |
---|
| 642 | IGCM_debug_Print 3 "restart ${compname}" |
---|
[2] | 643 | |
---|
[544] | 644 | if ( ${FirstInitialize} ) ; then |
---|
[2] | 645 | |
---|
[544] | 646 | if [ "${config_Restarts_OverRule}" = "y" ] ; then |
---|
[778] | 647 | eval config_${comp}_Restart="y" |
---|
| 648 | eval config_${comp}_RestartDate=${config_Restarts_RestartDate} |
---|
| 649 | eval config_${comp}_RestartJobName=${config_Restarts_RestartJobName} |
---|
| 650 | eval config_${comp}_RestartPath=${config_Restarts_RestartPath} |
---|
| 651 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
| 652 | eval CompOldName=${comp} |
---|
[544] | 653 | else |
---|
[778] | 654 | # Read component Restarts parameters |
---|
| 655 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} Restart |
---|
| 656 | eval do_start=\${config_${comp}_Restart} > /dev/null 2>&1 |
---|
[2] | 657 | |
---|
[778] | 658 | if [ "${do_start}" = "y" ] ; then |
---|
| 659 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartDate |
---|
| 660 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartJobName |
---|
| 661 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ${comp} RestartPath |
---|
| 662 | else |
---|
| 663 | eval config_${comp}_RestartDate=-1 |
---|
| 664 | eval config_${comp}_RestartJobName=${NULL_STR} |
---|
| 665 | eval config_${comp}_RestartPath=${NULL_STR} |
---|
| 666 | fi |
---|
[849] | 667 | |
---|
[778] | 668 | eval CompOldName=\${config_${comp}_OldName} |
---|
| 669 | if [ X${CompOldName} = X ] ; then |
---|
| 670 | eval CompOldName=${comp} |
---|
| 671 | fi |
---|
| 672 | |
---|
| 673 | # Reinitialize IsMatching to allow searching for a different tar file for each component. |
---|
| 674 | IsMatching="" |
---|
| 675 | TarFileFound="" |
---|
[544] | 676 | fi |
---|
[2] | 677 | |
---|
[544] | 678 | if [ "${do_start}" = "y" ] ; then |
---|
[2] | 679 | |
---|
[672] | 680 | # Restore Restarts files |
---|
| 681 | #----------------------- |
---|
[778] | 682 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 683 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 684 | |
---|
[778] | 685 | (( i=1 )) |
---|
| 686 | until [ $i -gt $NbFiles ]; do |
---|
| 687 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 688 | eval file_in=${file_in_} |
---|
| 689 | (( i_ = i+1 )) |
---|
| 690 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 691 | eval file_out=${file_out_} |
---|
| 692 | |
---|
| 693 | eval Date_tmp=\${config_${comp}_RestartDate} |
---|
| 694 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${Date_tmp} ) |
---|
[672] | 695 | # will be re-use |
---|
| 696 | eval RestartPath=\${config_${comp}_RestartPath} |
---|
| 697 | eval RestartJobName=\${config_${comp}_RestartJobName} |
---|
| 698 | # |
---|
[778] | 699 | Path_r=${RestartPath}/${RestartJobName}/${CompOldName}/Restart |
---|
| 700 | file_in_Name=${RestartJobName}_${Date_r}_${file_in} |
---|
[2] | 701 | |
---|
[778] | 702 | extension_in=$( echo ${file_in_Name##*.} ) |
---|
| 703 | extension_out=$( echo ${file_out##*.} ) |
---|
[672] | 704 | |
---|
[778] | 705 | generic_restart_file_name_in=$( basename ${file_in_Name} .${extension_in} ) |
---|
| 706 | generic_restart_file_name_out=$( basename ${file_out} .${extension_out} ) |
---|
[2] | 707 | |
---|
[778] | 708 | Path_OUT=${Path_r}/${generic_restart_file_name_in} |
---|
| 709 | |
---|
[672] | 710 | if [ $( IGCM_sys_TestFileBuffer ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then |
---|
[897] | 711 | IGCM_debug_Print 3 "Buffered restart ${Path_OUT}*.${extension_in} " |
---|
[778] | 712 | Buffered=true |
---|
| 713 | Archived=false |
---|
| 714 | Tared=false |
---|
| 715 | nb_restart_file=$(IGCM_sys_CountFileBuffer ${Path_OUT}_????.${extension_in}) |
---|
[672] | 716 | elif [ $( IGCM_sys_TestFileArchive ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then |
---|
[897] | 717 | IGCM_debug_Print 3 "Archived restart ${Path_OUT}*.${extension_in}" |
---|
[778] | 718 | Buffered=false |
---|
| 719 | Archived=true |
---|
| 720 | Tared=false |
---|
| 721 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.${extension_in}) |
---|
[672] | 722 | else |
---|
[897] | 723 | IGCM_debug_Print 3 "No restart file in the buffer nor in the archive directory" |
---|
| 724 | IGCM_debug_Print 3 "${Path_OUT}*.${extension_in} do not exist" |
---|
[902] | 725 | IGCM_debug_Print 3 "Restart files will now be searched for in : ${RestartPath}/${RestartJobName}/RESTART" |
---|
[778] | 726 | Buffered=false |
---|
| 727 | Archived=false |
---|
| 728 | Tared=true |
---|
[672] | 729 | # Look after the tar file we want if we did not found it already |
---|
[778] | 730 | if [ X${IsMatching} = X ] ; then |
---|
[947] | 731 | IGCM_sys_TestDirArchive ${RestartPath}/${RestartJobName}/RESTART |
---|
| 732 | if [ $? ] ; then |
---|
[897] | 733 | for PotentialTarFile in $( IGCM_sys_RshArchive "find ${RestartPath}/${RestartJobName}/RESTART -name "${RestartJobName}_*restart*.tar" -print" ) ; do |
---|
| 734 | IsMatching=$( echo ${PotentialTarFile##*/} | \ |
---|
| 735 | sed "s:_restart::" | \ |
---|
| 736 | sed "s:^${RestartJobName}_::" | \ |
---|
| 737 | sed "s:\.tar$::" | \ |
---|
| 738 | gawk -F_ -v restartdate=${Date_r} \ |
---|
| 739 | '{if (($1 <= restartdate) && ($2 >= restartdate)) {print $1"_"$2}}' ) |
---|
| 740 | if [ ! X${IsMatching} = X ] ; then |
---|
| 741 | TarFileFound=${PotentialTarFile} |
---|
| 742 | break |
---|
| 743 | fi |
---|
| 744 | done |
---|
[1017] | 745 | fi |
---|
| 746 | # Stop here if nothing has been found |
---|
| 747 | if [ X${TarFileFound} = X ] ; then |
---|
[902] | 748 | IGCM_debug_Print 3 "Restart files were not found!" |
---|
| 749 | IGCM_debug_Print 3 "Restart files have been searched for in buffer and archive directory." |
---|
| 750 | IGCM_debug_Print 3 "They have been searched for in packed and unpacked format." |
---|
[897] | 751 | IGCM_debug_Exit "Please double check restart settings in config.card" |
---|
| 752 | IGCM_debug_Verif_Exit |
---|
| 753 | fi |
---|
[778] | 754 | fi |
---|
[918] | 755 | IGCM_sys_PrepareTaredRestart ${TarFileFound} |
---|
| 756 | TarFileLocation=$( basename ${TarFileFound} ) |
---|
[801] | 757 | IGCM_debug_Print 1 "tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in}" |
---|
| 758 | tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in} |
---|
[778] | 759 | nb_restart_file=$( IGCM_sys_CountFileBuffer ${comp}_${generic_restart_file_name_in}_????.${extension_in} ) |
---|
| 760 | fi |
---|
[672] | 761 | |
---|
| 762 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
[821] | 763 | j=0 # BASH LINE NOT NEEDED |
---|
| 764 | # BASH for j4 in in $( eval echo {0000..$(( nb_restart_file - 1 ))} ) ; do |
---|
| 765 | until [ $j -ge ${nb_restart_file} ]; do # BASH LINE NOT NEEDED |
---|
| 766 | j4=${j} # BASH LINE NOT NEEDED |
---|
[778] | 767 | if [ X${Buffered} = Xtrue ] ; then |
---|
| 768 | IGCM_sys_GetBuffer ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 769 | elif [ X${Archived} = Xtrue ] ; then |
---|
| 770 | IGCM_sys_Get ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 771 | elif [ X${Tared} = Xtrue ] ; then |
---|
| 772 | IGCM_sys_Mv ${comp}_${generic_restart_file_name_in}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 773 | fi |
---|
[821] | 774 | (( j=j+1 )) #BASH LINE NOT NEEDED |
---|
[778] | 775 | done |
---|
[740] | 776 | |
---|
[1248] | 777 | # OCE SPECIFIC TO REBUILD RESTART WHEN NUMBER OF RESTART FILES DONT MATCH MPI PROCESS |
---|
| 778 | if [ X${OCE_PROC_MPI} != X ] ; then |
---|
| 779 | if [ ${OCE_PROC_MPI} -ne ${nb_restart_file} ] ; then |
---|
[1399] | 780 | IGCM_sys_rebuild_nemo ${generic_restart_file_name_out} ${nb_restart_file} ${extension_out} ${generic_restart_file_name_out}_????.${extension_out} |
---|
[740] | 781 | IGCM_sys_Rm ${generic_restart_file_name_out}_????.${extension_out} |
---|
| 782 | fi |
---|
| 783 | fi |
---|
[778] | 784 | else |
---|
| 785 | if [ X${Buffered} = Xtrue ] ; then |
---|
| 786 | IGCM_sys_GetBuffer ${Path_r}/${file_in_Name} ${file_out} |
---|
| 787 | elif [ X${Archived} = Xtrue ] ; then |
---|
| 788 | IGCM_sys_Get ${Path_r}/${file_in_Name} ${file_out} |
---|
| 789 | elif [ X${Tared} = Xtrue ] ; then |
---|
| 790 | IGCM_sys_Mv ${comp}_${file_in_Name} ${file_out} |
---|
| 791 | fi |
---|
| 792 | fi |
---|
| 793 | (( i=i+3 )) |
---|
| 794 | done |
---|
| 795 | else |
---|
| 796 | if [ X${FileName0} != XNONE ] ; then |
---|
| 797 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 798 | else |
---|
| 799 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 800 | fi |
---|
| 801 | fi |
---|
[544] | 802 | fi |
---|
[893] | 803 | elif ( [ ${Period} -eq 1 ] && [ ${DRYRUN} -eq 0 ] ) ; then |
---|
[544] | 804 | # if not FirstInitialize and first loop of this job |
---|
[2] | 805 | |
---|
[544] | 806 | # Restore Restarts files |
---|
| 807 | #----------------------- |
---|
| 808 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
[778] | 809 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[2] | 810 | |
---|
[778] | 811 | (( i=1 )) |
---|
| 812 | until [ $i -gt $NbFiles ]; do |
---|
| 813 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 814 | eval file_in=${file_in_} |
---|
| 815 | (( i_ = i+1 )) |
---|
| 816 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 817 | eval file_out=${file_out_} |
---|
[2] | 818 | |
---|
[1028] | 819 | file_in_Name=${config_UserChoices_JobName}_${LastPeriodDateEnd}_${file_in} |
---|
[662] | 820 | |
---|
[778] | 821 | extension_in=$( echo ${file_in_Name##*.} ) |
---|
| 822 | extension_out=$( echo ${file_out##*.} ) |
---|
[67] | 823 | |
---|
[778] | 824 | generic_restart_file_name_in=$( basename ${file_in_Name} .${extension_in} ) |
---|
| 825 | generic_restart_file_name_out=$( basename ${file_out} .${extension_out} ) |
---|
| 826 | |
---|
| 827 | eval Path_BUF=\${R_BUF_${comp}_R}/${generic_restart_file_name_in} |
---|
| 828 | eval Path_OUT=\${R_OUT_${comp}_R}/${generic_restart_file_name_in} |
---|
| 829 | |
---|
[662] | 830 | if [ $( IGCM_sys_TestFileBuffer ${Path_BUF}*.${extension_in} ; echo $? ) = 0 ] ; then |
---|
[897] | 831 | IGCM_debug_Print 3 "Buffered restart ${Path_BUF}*.${extension_in}" |
---|
[778] | 832 | Buffered=true |
---|
| 833 | Archived=false |
---|
| 834 | Tared=false |
---|
| 835 | nb_restart_file=$(IGCM_sys_CountFileBuffer ${Path_BUF}_????.${extension_in}) |
---|
[672] | 836 | elif [ $( IGCM_sys_TestFileArchive ${Path_OUT}*.${extension_in} ; echo $? ) = 0 ] ; then |
---|
[897] | 837 | IGCM_debug_Print 3 "Archived restart ${Path_OUT}*.${extension_in}" |
---|
[778] | 838 | Buffered=false |
---|
| 839 | Archived=true |
---|
| 840 | Tared=false |
---|
| 841 | nb_restart_file=$(IGCM_sys_CountFileArchive ${Path_OUT}_????.${extension_in}) |
---|
| 842 | else |
---|
[897] | 843 | IGCM_debug_Print 3 "No restart file in the buffer nor in the archive directory" |
---|
[902] | 844 | IGCM_debug_Print 3 "Restart files will now be searched for in : ${R_SAVE}/RESTART" |
---|
[778] | 845 | Buffered=false |
---|
| 846 | Archived=false |
---|
| 847 | Tared=true |
---|
| 848 | # Look after the tar file we want if we did not found it already |
---|
| 849 | if [ X${IsMatching} = X ] ; then |
---|
[801] | 850 | for PotentialTarFile in $( IGCM_sys_RshArchive "find ${R_SAVE}/RESTART -name "${config_UserChoices_JobName}_*_restart.tar" -print" ) ; do |
---|
[778] | 851 | IsMatching=$( echo ${PotentialTarFile##*/} | sed "s:^${config_UserChoices_JobName}_::" | sed "s:\.restart\.tar$::" | gawk -F_ -v restartdate=${LastPeriodDateEnd} '{if (($1 < restartdate) && ($2 >= restartdate)) {print $1"_"$2}}' ) |
---|
| 852 | if [ ! X${IsMatching} = X ] ; then |
---|
| 853 | TarFileFound=${PotentialTarFile} |
---|
| 854 | break |
---|
| 855 | fi |
---|
| 856 | done |
---|
| 857 | fi |
---|
[1017] | 858 | # Stop here if nothing has been found |
---|
| 859 | if [ X${TarFileFound} = X ] ; then |
---|
| 860 | IGCM_debug_Print 3 "Restart files were not found!" |
---|
| 861 | IGCM_debug_Print 3 "Restart files have been searched for in buffer and archive directory." |
---|
| 862 | IGCM_debug_Print 3 "They have been searched for in packed and unpacked format." |
---|
| 863 | IGCM_debug_Exit "Please double check restart settings in config.card" |
---|
| 864 | IGCM_debug_Verif_Exit |
---|
| 865 | fi |
---|
[918] | 866 | IGCM_sys_PrepareTaredRestart ${TarFileFound} |
---|
| 867 | TarFileLocation=$( basename ${TarFileFound} ) |
---|
[801] | 868 | IGCM_debug_Print 1 "tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in}" |
---|
| 869 | tar xvf ${TarFileLocation} ${comp}_${generic_restart_file_name_in}*.${extension_in} |
---|
[778] | 870 | nb_restart_file=$( IGCM_sys_CountFileBuffer ${comp}_${generic_restart_file_name_in}_????.${extension_in} ) |
---|
| 871 | fi |
---|
[41] | 872 | |
---|
[778] | 873 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
[821] | 874 | j=0 # BASH LINE NOT NEEDED |
---|
| 875 | #BASH for j4 in in $( eval echo {0000..$(( nb_restart_file - 1 ))} ) ; do |
---|
| 876 | until [ $j -ge ${nb_restart_file} ]; do # BASH LINE NOT NEEDED |
---|
| 877 | j4=${j} # BASH LINE NOT NEEDED |
---|
[778] | 878 | if [ X${Buffered} = Xtrue ] ; then |
---|
| 879 | IGCM_sys_GetBuffer ${Path_BUF}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 880 | elif [ X${Archived} = Xtrue ] ; then |
---|
| 881 | IGCM_sys_Get ${Path_OUT}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 882 | elif [ X${Tared} = Xtrue ] ; then |
---|
| 883 | IGCM_sys_Mv ${comp}_${generic_restart_file_name_in}_${j4}.${extension_in} ${generic_restart_file_name_out}_${j4}.${extension_out} |
---|
| 884 | fi |
---|
[821] | 885 | (( j=j+1 )) # BASH LINE NOT NEEDED |
---|
[778] | 886 | done |
---|
| 887 | else |
---|
| 888 | if [ X${Buffered} = Xtrue ] ; then |
---|
| 889 | eval IGCM_sys_GetBuffer \${R_BUF_${comp}_R}/${file_in_Name} ${file_out} |
---|
| 890 | elif [ X${Archived} = Xtrue ] ; then |
---|
| 891 | eval IGCM_sys_Get \${R_OUT_${comp}_R}/${file_in_Name} ${file_out} |
---|
| 892 | elif [ X${Tared} = Xtrue ] ; then |
---|
| 893 | IGCM_sys_Mv ${comp}_${file_in_Name} ${file_out} |
---|
| 894 | fi |
---|
| 895 | fi |
---|
| 896 | (( i=i+3 )) |
---|
| 897 | done |
---|
[544] | 898 | else |
---|
[778] | 899 | if [ X${FileName0} != XNONE ] ; then |
---|
| 900 | IGCM_debug_Exit "IGCM_comp_GetInputRestartFiles : No file in list for ${compname}." |
---|
| 901 | else |
---|
| 902 | IGCM_debug_Print 1 "IGCM_comp_GetInputRestartFiles : NONE specified in Restart List ${compname}." |
---|
| 903 | fi |
---|
[544] | 904 | fi |
---|
[420] | 905 | fi |
---|
[544] | 906 | done |
---|
[420] | 907 | |
---|
[544] | 908 | NbFiles=$( ls * 2> /dev/null | wc -l ) |
---|
| 909 | if [ ${NbFiles} -gt 0 ] ; then |
---|
| 910 | IGCM_sys_Chmod u+rw * |
---|
| 911 | fi |
---|
| 912 | |
---|
| 913 | IGCM_debug_PopStack "IGCM_comp_GetInputRestartFiles" |
---|
[2] | 914 | } |
---|
| 915 | |
---|
| 916 | #======================================================================= |
---|
[269] | 917 | function IGCM_comp_PeriodStart |
---|
| 918 | { |
---|
[544] | 919 | IGCM_debug_PushStack "IGCM_comp_PeriodStart" |
---|
[269] | 920 | |
---|
[544] | 921 | # Debug Print : |
---|
| 922 | echo |
---|
| 923 | IGCM_debug_Print 1 "IGCM_comp_PeriodStart" |
---|
| 924 | echo |
---|
[269] | 925 | |
---|
[902] | 926 | typeset ExeNameIn ExeNameOut |
---|
[544] | 927 | typeset comp compname comptagname |
---|
| 928 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[902] | 929 | # Define component |
---|
[544] | 930 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 931 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[269] | 932 | |
---|
[544] | 933 | # Copy executable for this component |
---|
| 934 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 935 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[269] | 936 | |
---|
[544] | 937 | # Debug Print |
---|
| 938 | IGCM_debug_Print 3 "PeriodStart ${compname} Driver Function (if any)." |
---|
| 939 | # UPDATE component |
---|
| 940 | ${comp}_PeriodStart 2> /dev/null |
---|
[269] | 941 | |
---|
[544] | 942 | done |
---|
[269] | 943 | |
---|
[544] | 944 | IGCM_debug_PopStack "IGCM_comp_PeriodStart" |
---|
[269] | 945 | } |
---|
| 946 | |
---|
[1166] | 947 | |
---|
| 948 | |
---|
[269] | 949 | #======================================================================= |
---|
[1166] | 950 | function IGCM_comp_modifyFile |
---|
| 951 | { |
---|
| 952 | # |
---|
| 953 | # syntax: IGCM_comp_modifyFile filein key [value] |
---|
| 954 | # |
---|
| 955 | # For example : IGCM_comp_modifyFile metrics_template.py case_id \'SE_${YEARS}\' |
---|
| 956 | # |
---|
| 957 | # This function is used to replace a pattern in a file for a specific variable. |
---|
| 958 | # |
---|
| 959 | # Arguments: |
---|
| 960 | # - filein : the file in run directory in which the variable should be set |
---|
| 961 | # - key : the variable to modify |
---|
| 962 | # - value : the value to set the key equal to |
---|
| 963 | # |
---|
| 964 | IGCM_debug_PushStack "IGCM_comp_modifyFile" |
---|
| 965 | |
---|
| 966 | typeset filein key value pattern |
---|
| 967 | |
---|
| 968 | # Set local variables and test the arguments |
---|
| 969 | if [ $# = 3 ] ; then |
---|
| 970 | # Normal case with 3 arguments |
---|
| 971 | filein=$1 ; key=$2 ; value=$3 |
---|
| 972 | else |
---|
| 973 | IGCM_debug_Exit "IGCM_comp_modifyFile: Bad number of arguments." |
---|
| 974 | IGCM_debug_PopStack "IGCM_comp_modifyFile" |
---|
| 975 | return |
---|
| 976 | fi |
---|
| 977 | IGCM_debug_Print 1 "Entering IGCM_comp_modifyFile with arguments: ${filein} ${key} ${value}" |
---|
| 978 | |
---|
| 979 | # Test if the file exist |
---|
| 980 | if [ ! -f ${filein} ] ; then |
---|
| 981 | IGCM_debug_Exit "IGCM_comp_modifyFile: ${filein} does not exist." |
---|
| 982 | IGCM_debug_PopStack "IGCM_comp_modifyFile" |
---|
| 983 | return |
---|
| 984 | fi |
---|
| 985 | |
---|
| 986 | # Read the line with key in the file without the comments |
---|
| 987 | pattern=$( grep "^ *${key} *=" ${filein} | sed -e "s% *\!.*%%" ) |
---|
| 988 | |
---|
| 989 | # Verify the existance of the pattern |
---|
| 990 | if [ X"${pattern}" = X ] ; then |
---|
| 991 | # Variable key is not set in filein, stop. |
---|
| 992 | IGCM_debug_Exit "IGCM_comp_modifyFile : Variable ${key} is not set in correct file. It should be set in ${filein}." |
---|
| 993 | IGCM_debug_PopStack "IGCM_comp_modifyFile" |
---|
| 994 | return |
---|
| 995 | fi |
---|
| 996 | |
---|
| 997 | # Now change key in filein |
---|
[1176] | 998 | #sed -e "s:${pattern}:${key}=${value}:" ${filein} > ${filein}.tmp |
---|
| 999 | sed -e "s:^ *${key} *=.*:${key}=${value}:" ${filein} > ${filein}.tmp |
---|
[1166] | 1000 | IGCM_debug_Print 1 "IGCM_comp_modifyFile: In ${filein} set ${key}=${value}" |
---|
| 1001 | \mv ${filein}.tmp ${filein} |
---|
| 1002 | |
---|
| 1003 | IGCM_debug_PopStack "IGCM_comp_modifyFile" |
---|
| 1004 | } |
---|
| 1005 | |
---|
| 1006 | #======================================================================= |
---|
[1069] | 1007 | function IGCM_comp_modifyDefFile |
---|
| 1008 | { |
---|
| 1009 | # |
---|
| 1010 | # syntax: IGCM_comp_modifyDefFile type filein key [value] |
---|
| 1011 | # |
---|
| 1012 | # For example : IGCM_comp_modifyDefFile blocker run.def day_step 1200 |
---|
| 1013 | # |
---|
| 1014 | # This function is used to modify a parameter file for a specific variable. |
---|
[1075] | 1015 | # The file must be a ".def" file, i.e. with IOIPSL parameter file syntax. |
---|
| 1016 | # This function can be used in the comp.driver files for the components. |
---|
[1069] | 1017 | # |
---|
[1075] | 1018 | # Arguments: |
---|
[1081] | 1019 | # - type : first argument must be blocker, nonblocker or force |
---|
[1075] | 1020 | # For "blocker" case, the variable must be attributed the keyworld AUTO |
---|
[1069] | 1021 | # otherwise this function will exit. |
---|
[1075] | 1022 | # For "nonblocker" case, the user can remove or modify the variable. For |
---|
| 1023 | # this case, as long as AUTO is not set, no modification will be done. |
---|
[1081] | 1024 | # For "force" case, the variable will be modified even if it is not set to AUTO |
---|
[1069] | 1025 | # - filein : the file in run directory of .def type in which the variable should be set |
---|
| 1026 | # - key : the variable to modify |
---|
[1075] | 1027 | # - value : the value to set the key equal to, optional. If value is not set or if |
---|
[1069] | 1028 | # value=DEFAULT, then a default value must be given in filein using syntax : |
---|
| 1029 | # key= AUTO : DEFAULT=def_value |
---|
| 1030 | # |
---|
[1075] | 1031 | IGCM_debug_PushStack "IGCM_comp_modifyDefFile" |
---|
[1069] | 1032 | |
---|
[1166] | 1033 | typeset type filein key value |
---|
| 1034 | typeset filelist nb_occ modify |
---|
| 1035 | |
---|
[1075] | 1036 | # Set local variables and test the arguments |
---|
| 1037 | if [ $# = 4 ] ; then |
---|
| 1038 | # Normal case with 4 arguments |
---|
| 1039 | type=$1 ; filein=$2 ; key=$3 ; value=$4 |
---|
| 1040 | elif [ $# = 3 ] ; then |
---|
| 1041 | # Normal case with 3 arguments |
---|
| 1042 | type=$1 ; filein=$2 ; key=$3; value="DEFAULT" |
---|
| 1043 | else |
---|
| 1044 | IGCM_debug_Exit "IGCM_comp_modifyDefFile: Bad number of arguments." |
---|
[1079] | 1045 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
---|
[1075] | 1046 | return |
---|
| 1047 | fi |
---|
[1166] | 1048 | IGCM_debug_Print 1 "Entering IGCM_comp_modifyDefFile with arguments: ${type} ${filein} ${key} ${value}" |
---|
[1069] | 1049 | |
---|
[1075] | 1050 | # Test if first argument is correct |
---|
[1166] | 1051 | if [ ${type} != blocker ] && [ ${type} != nonblocker ] && [ ${type} != force ] ; then |
---|
[1081] | 1052 | IGCM_debug_Exit "IGCM_comp_modifyDefFile: Error in first argument must be blocker, nonblocker or force" |
---|
[1079] | 1053 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
---|
[1075] | 1054 | return |
---|
| 1055 | fi |
---|
[1069] | 1056 | |
---|
[1215] | 1057 | # Test if the file exist. |
---|
| 1058 | # Exit with error if the file does not exist for the case blocker or force. |
---|
| 1059 | # Only return for the case nonblocker. |
---|
[1075] | 1060 | if [ ! -f ${filein} ] ; then |
---|
[1215] | 1061 | if [ ${type} = blocker ] || [ ${type} = force ] ; then |
---|
| 1062 | IGCM_debug_Exit "IGCM_comp_modifyDefFile: ${filein} does not exist." |
---|
| 1063 | else |
---|
| 1064 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${filein} does not exist. Nothing will be done for this file." |
---|
| 1065 | fi |
---|
[1079] | 1066 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
---|
[1075] | 1067 | return |
---|
| 1068 | fi |
---|
[1069] | 1069 | |
---|
[1102] | 1070 | # Define list of files to test using all files with suffix .def (except used*.def) |
---|
| 1071 | filelist=$( ls *def | grep -v used ) |
---|
[1069] | 1072 | |
---|
[1075] | 1073 | # Count number of occurances for the key in all files |
---|
[1166] | 1074 | nb_occ=$( grep -w ${key} ${filelist} | grep -v "#" | wc -l ) |
---|
[1069] | 1075 | |
---|
[1075] | 1076 | # Test if key is set several times |
---|
[1166] | 1077 | if [ ${nb_occ} -gt 1 ] ; then |
---|
| 1078 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : Error in ${filein}: Variable=${key} is set ${nb_occ} times" |
---|
[1079] | 1079 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
---|
[1075] | 1080 | return |
---|
| 1081 | fi |
---|
| 1082 | |
---|
| 1083 | # Treatement according to different cases |
---|
[1166] | 1084 | if [ ${nb_occ} -eq 0 ] && [ ${type} = blocker ] ; then |
---|
[1075] | 1085 | # Stop if the key is never set and the function is blocker |
---|
[1166] | 1086 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : Error in ${filein}: Variable=${key} has been removed but this function is blocker. " |
---|
| 1087 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: restore ${filein} for variable ${key}." |
---|
| 1088 | elif [ ${nb_occ} -eq 0 ] && [ ${type} = nonblocker ] ; then |
---|
[1075] | 1089 | # The key is not set but it is a nonblocker call so nothing is done. |
---|
[1166] | 1090 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${key} is not set in ${filein}. This is a nonblocker call so nothing is done." |
---|
| 1091 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: Default value for ${key} from the model will be used." |
---|
[1081] | 1092 | modify=no |
---|
[1166] | 1093 | elif [ $( grep ${key} ${filein} | grep -v "\#" |wc -l ) = 0 ] ; then |
---|
[1075] | 1094 | # Variable key is not set in filein, stop. |
---|
[1166] | 1095 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : Variable ${key} is not set in correct file. It should be set in ${filein}." |
---|
[1081] | 1096 | fi |
---|
| 1097 | |
---|
| 1098 | # Check if AUTO is set in the filein on the same line as the key variable |
---|
[1166] | 1099 | if [ $( grep -w ${key} ${filein} | grep -v "\#" | grep AUTO | wc -l ) = 1 ] ; then |
---|
[1156] | 1100 | # Modification will be done for all cases |
---|
| 1101 | modify=yes |
---|
| 1102 | else |
---|
| 1103 | # The variable was not set to AUTO |
---|
[1166] | 1104 | if [ ${type} = blocker ] ; then |
---|
[1156] | 1105 | # Exit because this is a blocker call |
---|
[1166] | 1106 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : The variable ${key} cannot be modified. It should be set to AUTO." |
---|
[1190] | 1107 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
---|
[1156] | 1108 | return |
---|
[1166] | 1109 | elif [ ${type} = nonblocker ] ; then |
---|
[1156] | 1110 | # Do nothing. Suppose that the user did set the variable correct |
---|
[1166] | 1111 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${key} is set by the user. Nothing done." |
---|
[1156] | 1112 | modify=no |
---|
[1166] | 1113 | elif [ ${type} = force ] ; then |
---|
[1156] | 1114 | # Force modification |
---|
[1166] | 1115 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile : Variabl=${key} was not set to AUTO. Modification will be forced." |
---|
[1081] | 1116 | modify=yes |
---|
[1156] | 1117 | fi |
---|
[1081] | 1118 | fi |
---|
[1069] | 1119 | |
---|
[1081] | 1120 | # Do the modifcation now |
---|
[1166] | 1121 | if [ ${modify} = yes ] ; then |
---|
[1081] | 1122 | |
---|
[1156] | 1123 | # For option DEFAULT, read default value from file. |
---|
[1166] | 1124 | if [ X"${value}" = XDEFAULT ] || [ X"${value}" = X ] ; then |
---|
[1156] | 1125 | # Case to set DEFAULT value |
---|
| 1126 | # Read default value from filein |
---|
[1166] | 1127 | value=$( grep ${key} ${filein} | grep -v "\#" | awk -F"DEFAULT *=" '{print $2}') |
---|
[1069] | 1128 | |
---|
[1166] | 1129 | if [ X"${value}" = X ] ; then |
---|
| 1130 | IGCM_debug_Exit "IGCM_comp_modifyDefFile : The variable ${key} needs a DEFAULT value in ${filein}." |
---|
| 1131 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: The syntax in ${filein} should be:" |
---|
| 1132 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: ${key}=_AUTO_:DEFAULT=def_value" |
---|
[1156] | 1133 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
---|
| 1134 | return |
---|
[1075] | 1135 | fi |
---|
[1156] | 1136 | fi |
---|
[1069] | 1137 | |
---|
[1156] | 1138 | # Now change key in filein |
---|
[1166] | 1139 | sed -e "s/^${key}\ *=.*/${key}= ${value}/" ${filein} > ${filein}.tmp |
---|
| 1140 | IGCM_debug_Print 1 "IGCM_comp_modifyDefFile: In ${filein} set ${key}=${value}" |
---|
| 1141 | \mv ${filein}.tmp ${filein} |
---|
[1075] | 1142 | fi |
---|
[1079] | 1143 | IGCM_debug_PopStack "IGCM_comp_modifyDefFile" |
---|
[1069] | 1144 | } |
---|
| 1145 | |
---|
| 1146 | #======================================================================= |
---|
[1085] | 1147 | function IGCM_comp_modifyNamelist |
---|
| 1148 | { |
---|
| 1149 | # |
---|
| 1150 | # syntax: IGCM_comp_modifyNamelist type filein key [value] |
---|
| 1151 | # |
---|
| 1152 | # For example : IGCM_comp_modifyNamelist blocker run.def day_step 1200 |
---|
| 1153 | # |
---|
| 1154 | # This function is used to modify a parameter file for a specific variable. |
---|
[1155] | 1155 | # The file must be a "namelist" file, i.e. with fortran namelist syntax. |
---|
[1085] | 1156 | # This function can be used in the comp.driver files for the components. |
---|
| 1157 | # |
---|
| 1158 | # Arguments: |
---|
| 1159 | # - type : first argument must be blocker, nonblocker or force |
---|
| 1160 | # For "blocker" case, the variable must be attributed the keyworld AUTO |
---|
| 1161 | # otherwise this function will exit. |
---|
| 1162 | # For "nonblocker" case, the user can remove or modify the variable. For |
---|
| 1163 | # this case, as long as AUTO is not set, no modification will be done. |
---|
| 1164 | # For "force" case, the variable will be modified even if it is not set to AUTO |
---|
| 1165 | # - filein : the file in run directory of .def type in which the variable should be set |
---|
| 1166 | # - key : the variable to modify |
---|
| 1167 | # - value : the value to set the key equal to, optional. If value is not set or if |
---|
| 1168 | # value=DEFAULT, then a default value must be given in filein using syntax : |
---|
| 1169 | # key= AUTO : DEFAULT=def_value |
---|
| 1170 | # |
---|
| 1171 | IGCM_debug_PushStack "IGCM_comp_modifyNamelist" |
---|
| 1172 | |
---|
[1166] | 1173 | typeset type filein key value pattern modify |
---|
| 1174 | |
---|
[1085] | 1175 | # Set local variables and test the arguments |
---|
| 1176 | if [ $# = 4 ] ; then |
---|
| 1177 | # Normal case with 4 arguments |
---|
| 1178 | type=$1 ; filein=$2 ; key=$3 ; value=$4 |
---|
| 1179 | elif [ $# = 3 ] ; then |
---|
| 1180 | # Normal case with 3 arguments |
---|
| 1181 | type=$1 ; filein=$2 ; key=$3; value="DEFAULT" |
---|
| 1182 | else |
---|
| 1183 | IGCM_debug_Exit "IGCM_comp_modifyNamelist: Bad number of arguments." |
---|
| 1184 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
---|
| 1185 | return |
---|
| 1186 | fi |
---|
[1166] | 1187 | IGCM_debug_Print 1 "Entering IGCM_comp_modifyNamelist with arguments: ${type} ${filein} ${key} ${value}" |
---|
[1085] | 1188 | |
---|
| 1189 | # Test if first argument is correct |
---|
[1166] | 1190 | if [ ${type} != blocker ] && [ ${type} != nonblocker ] && [ ${type} != force ] ; then |
---|
[1085] | 1191 | IGCM_debug_Exit "IGCM_comp_modifyNamelist: Error in first argument must be blocker, nonblocker or force" |
---|
| 1192 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
---|
| 1193 | return |
---|
| 1194 | fi |
---|
| 1195 | |
---|
[1215] | 1196 | # Test if the file exist. |
---|
| 1197 | # Exit with error if the file does not exist for the case blocker or force. |
---|
| 1198 | # Only return for the case nonblocker. |
---|
[1085] | 1199 | if [ ! -f ${filein} ] ; then |
---|
[1215] | 1200 | if [ ${type} = blocker ] || [ ${type} = force ] ; then |
---|
| 1201 | IGCM_debug_Exit "IGCM_comp_modifyNamelist: ${filein} does not exist." |
---|
| 1202 | else |
---|
| 1203 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: ${filein} does not exist. Nothing will be done for this file." |
---|
| 1204 | fi |
---|
[1085] | 1205 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
---|
| 1206 | return |
---|
| 1207 | fi |
---|
| 1208 | |
---|
| 1209 | # Read the line with key in the file without the comments |
---|
[1166] | 1210 | pattern=$( grep "^ *${key} *=" ${filein} | sed -e "s% *\!.*%%" ) |
---|
[1155] | 1211 | |
---|
[1085] | 1212 | # Verify the existance of the pattern |
---|
| 1213 | if [ X"$pattern" = X ] ; then |
---|
[1156] | 1214 | # Variable key is not set in filein, stop. |
---|
[1166] | 1215 | IGCM_debug_Exit "IGCM_comp_modifyNamelist : Variable ${key} is not set in correct file. It should be set in ${filein}." |
---|
[1156] | 1216 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
---|
| 1217 | return |
---|
[1085] | 1218 | fi |
---|
[1155] | 1219 | |
---|
[1085] | 1220 | # Check if the variable is set to AUTO in the filein |
---|
| 1221 | if [ $( echo $pattern | grep AUTO | wc -l ) = 1 ] ; then |
---|
[1156] | 1222 | # Modification will be done for all cases |
---|
| 1223 | modify=yes |
---|
| 1224 | else |
---|
| 1225 | # The variable was not set to AUTO |
---|
[1166] | 1226 | if [ ${type} = blocker ] ; then |
---|
[1156] | 1227 | # Exit because this is a blocker call |
---|
[1166] | 1228 | IGCM_debug_Exit "IGCM_comp_modifyNamelist : The variable ${key} cannot be modified. It should be set to AUTO." |
---|
[1156] | 1229 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
---|
| 1230 | return |
---|
[1166] | 1231 | elif [ ${type} = nonblocker ] ; then |
---|
[1156] | 1232 | # Do nothing. Suppose that the user did set the variable correct |
---|
[1166] | 1233 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: ${key} is set by the user. Nothing done." |
---|
[1156] | 1234 | modify=no |
---|
[1166] | 1235 | elif [ ${type} = force ] ; then |
---|
[1156] | 1236 | # Force modification |
---|
[1166] | 1237 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist : Variabl=${key} was not set to AUTO. Modification will be forced." |
---|
[1085] | 1238 | modify=yes |
---|
[1156] | 1239 | fi |
---|
[1085] | 1240 | fi |
---|
| 1241 | |
---|
| 1242 | # Do the modifcation now |
---|
[1166] | 1243 | if [ ${modify} = yes ] ; then |
---|
[1085] | 1244 | |
---|
[1156] | 1245 | # For option DEFAULT, read default value from file. |
---|
[1166] | 1246 | if [ X"${value}" = XDEFAULT ] || [ X"${value}" = X ] ; then |
---|
[1156] | 1247 | # Case to set DEFAULT value |
---|
| 1248 | # Read default value from filein |
---|
| 1249 | value=$( echo $pattern | awk -F"DEFAULT *=" '{print $2}') |
---|
[1085] | 1250 | |
---|
[1166] | 1251 | if [ X"${value}" = X ] ; then |
---|
| 1252 | IGCM_debug_Exit "IGCM_comp_modifyNamelist : The variable ${key} needs a DEFAULT value in ${filein}." |
---|
| 1253 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: The syntax in ${filein} should be:" |
---|
| 1254 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: ${key}=_AUTO_:DEFAULT=def_value" |
---|
[1156] | 1255 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
---|
| 1256 | return |
---|
[1085] | 1257 | fi |
---|
[1156] | 1258 | fi |
---|
[1085] | 1259 | |
---|
[1156] | 1260 | # Now change key in filein |
---|
[1166] | 1261 | sed -e "s/${pattern}/ ${key}=${value}/" ${filein} > ${filein}.tmp |
---|
| 1262 | IGCM_debug_Print 1 "IGCM_comp_modifyNamelist: In ${filein} set ${key}=${value}" |
---|
| 1263 | \mv ${filein}.tmp ${filein} |
---|
[1085] | 1264 | fi |
---|
| 1265 | IGCM_debug_PopStack "IGCM_comp_modifyNamelist" |
---|
| 1266 | } |
---|
| 1267 | |
---|
| 1268 | #======================================================================= |
---|
[1074] | 1269 | function IGCM_comp_modifyXmlFile |
---|
| 1270 | { |
---|
| 1271 | # |
---|
| 1272 | # syntax: IGCM_comp_modifyXmlFile type filein keyid keyattrib value |
---|
| 1273 | # |
---|
| 1274 | # For example : IGCM_comp_modifyXmlFile force file_def_orchidee.xml sechiba2 enabled .TRUE. |
---|
| 1275 | # or IGCM_comp_modifyXmlFile blocker iodef.xml using_server NONE false |
---|
| 1276 | # |
---|
| 1277 | # This function is used to modify the value for a specific attribute and variable id. |
---|
[1155] | 1278 | # The file must be a valid xml file. |
---|
[1075] | 1279 | # This function can be used in the comp.driver files for the components. |
---|
[1074] | 1280 | # |
---|
[1075] | 1281 | # Arguments: |
---|
| 1282 | # - type : first argument must be blocker, nonblocker or force. |
---|
| 1283 | # For "blocker" case, the variable must be attributed the keyworld AUTO |
---|
[1074] | 1284 | # otherwise this function will exit. |
---|
[1075] | 1285 | # For "nonblocker" case, the user can remove or modify the variable. For |
---|
[1074] | 1286 | # this case, as long as AUTO is not set, no modification will be done. |
---|
[1075] | 1287 | # For "force" case, the variable will be modified even if it is not set to AUTO |
---|
[1074] | 1288 | # - filein : the file in run directory of .xml type in which the variable should be set |
---|
| 1289 | # - keyid : the variable to modify |
---|
| 1290 | # - keyattrib : the attribute name to modify. If NONE, then the variable itself will be modified |
---|
| 1291 | # - value : the value to set in the filein |
---|
| 1292 | # |
---|
[1075] | 1293 | IGCM_debug_PushStack "IGCM_comp_modifyXmlFile" |
---|
[1074] | 1294 | |
---|
[1166] | 1295 | typeset type filein keyid keyattrib value modify |
---|
| 1296 | |
---|
[1075] | 1297 | # Set local variables and test the arguments |
---|
| 1298 | if [ $# = 5 ] ; then |
---|
| 1299 | # Normal case with 4 arguments |
---|
| 1300 | type=$1 ; filein=$2 ; keyid=$3 ; keyattrib=$4 ; value=$5 |
---|
| 1301 | else |
---|
| 1302 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile: Bad number of arguments." |
---|
[1089] | 1303 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
---|
[1075] | 1304 | return |
---|
| 1305 | fi |
---|
[1166] | 1306 | IGCM_debug_Print 1 "Entering IGCM_comp_modifyXmlFile with arguments: type=${type} file=${filein}, id=${keyid} attribute=${keyattrib}, value=${value}" |
---|
[1074] | 1307 | |
---|
[1075] | 1308 | # Test if first argument is correct |
---|
[1166] | 1309 | if [ ${type} != blocker ] && [ ${type} != nonblocker ] && [ ${type} != force ] ; then |
---|
[1075] | 1310 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile: Error in first argument must be blocker, nonblocker or force" |
---|
[1089] | 1311 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
---|
[1075] | 1312 | return |
---|
| 1313 | fi |
---|
[1074] | 1314 | |
---|
[1215] | 1315 | # Test if the file exist. |
---|
| 1316 | # Exit with error if the file does not exist for the case blocker or force. |
---|
| 1317 | # Only return for the case nonblocker. |
---|
[1075] | 1318 | if [ ! -f ${filein} ] ; then |
---|
[1215] | 1319 | if [ ${type} = blocker ] || [ ${type} = force ] ; then |
---|
| 1320 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile: ${filein} does not exist." |
---|
| 1321 | else |
---|
| 1322 | IGCM_debug_Print 1 "IGCM_comp_modifyXmlFile: ${filein} does not exist. Nothing will be done for this file." |
---|
| 1323 | fi |
---|
[1089] | 1324 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
---|
[1075] | 1325 | return |
---|
| 1326 | fi |
---|
| 1327 | |
---|
[1399] | 1328 | # Test if keyid is set in filein. If not exit for case all cases(blocker, force) except nonblocker. |
---|
[1166] | 1329 | if [ $( grep -w ${keyid} ${filein} | wc -l ) = 0 ] ; then |
---|
[1399] | 1330 | if [ ${type} = nonblocker ] ; then |
---|
| 1331 | # This is a nonblocker case, print warning but do nothing else |
---|
| 1332 | IGCM_debug_Print 1 "IGCM_comp_modifyXmlFile: ${keyid} is not set in ${filein}. This is a nonblocker call so nothing is done." |
---|
| 1333 | else |
---|
| 1334 | # This is a blocker or force case : stop now |
---|
| 1335 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile : ${keyid} is not set in the file. Bad syntax of ${filein} file." |
---|
| 1336 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
---|
| 1337 | return |
---|
| 1338 | fi |
---|
[1075] | 1339 | fi |
---|
| 1340 | |
---|
| 1341 | # Check if AUTO is set on the same line as keyid and keyattrib |
---|
[1166] | 1342 | if [ $( grep -w ${keyid} ${filein} | grep AUTO | wc -l ) = 1 ] ; then |
---|
[1399] | 1343 | # Modification will be done |
---|
[1075] | 1344 | modify=yes |
---|
| 1345 | else |
---|
[1166] | 1346 | if [ ${type} = blocker ] ; then |
---|
[1075] | 1347 | # Exit, the variable must be set to AUTO |
---|
[1166] | 1348 | IGCM_debug_Exit "IGCM_comp_modifyXmlFile : blocker function. The ${keyattrib} for ${keyid} must be set to AUTO in ${filein}." |
---|
[1089] | 1349 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
---|
[1075] | 1350 | return |
---|
[1166] | 1351 | elif [ ${type} = nonblocker ] ; then |
---|
[1075] | 1352 | # Nothing will be done |
---|
| 1353 | IGCM_debug_Print 1 "Nonblocker nothing is done for ${filein}, id=${keyid} and attribute ${keyattrib}" |
---|
| 1354 | modify=no |
---|
[1166] | 1355 | elif [ ${type} = force ] ; then |
---|
[1075] | 1356 | # Force modification |
---|
[1166] | 1357 | IGCM_debug_Print 1 "IGCM_comp_modifyXmlFile : Attribute=${keyattrib} for id=${keyid} was not set to AUTO. Modification will be forced." |
---|
[1075] | 1358 | modify=yes |
---|
[1074] | 1359 | fi |
---|
[1075] | 1360 | fi |
---|
[1074] | 1361 | |
---|
[1075] | 1362 | # Do the modifcation now |
---|
[1166] | 1363 | if [ ${modify} = yes ] ; then |
---|
| 1364 | if [ ${keyattrib} = NONE ] ; then |
---|
[1075] | 1365 | # Case to modify the variable itself |
---|
| 1366 | IGCM_debug_Print 1 "Now modify ${filein} for id=${keyid} by setting the variable=${value}" |
---|
[1375] | 1367 | sed -e "s:\(<[^\"]*\"${keyid}\".*>\)\([^<]*\)\(<[^>]*\):\1${value}\3:" ${filein} > ${filein}.tmp |
---|
[1074] | 1368 | else |
---|
[1156] | 1369 | # Check if keyattrib is set on the same line as keyid |
---|
[1166] | 1370 | if [ $( grep -w ${keyid} ${filein} | grep ${keyattrib} | wc -l ) = 1 ] ; then |
---|
[1156] | 1371 | # Case to modify the attribute value |
---|
| 1372 | IGCM_debug_Print 1 "Now modify ${filein} for id=${keyid} by setting attribute to ${keyattrib}=${value}" |
---|
[1375] | 1373 | sed -e "/id=\"${keyid}\"/s:\(${keyattrib}=\"\)[^\"]*\(\"\):\1${value}\2:" ${filein} > ${filein}.tmp |
---|
[1156] | 1374 | else |
---|
| 1375 | # Case to add the attribute and its value |
---|
| 1376 | IGCM_debug_Print 1 "Now add in ${filein} for id=${keyid} the attribute ${keyattrib} to the value ${value}" |
---|
[1375] | 1377 | sed -e "/id=\"${keyid}\"/s:\/>: ${keyattrib}=\"${value}\"\/>:" ${filein} > ${filein}.tmp |
---|
[1156] | 1378 | fi |
---|
[1074] | 1379 | fi |
---|
[1166] | 1380 | \mv ${filein}.tmp ${filein} |
---|
[1075] | 1381 | fi |
---|
| 1382 | IGCM_debug_PopStack "IGCM_comp_modifyXmlFile" |
---|
[1074] | 1383 | } |
---|
| 1384 | |
---|
| 1385 | #======================================================================= |
---|
[2] | 1386 | function IGCM_comp_Update |
---|
| 1387 | { |
---|
[544] | 1388 | IGCM_debug_PushStack "IGCM_comp_Update" |
---|
[2] | 1389 | |
---|
| 1390 | # Debug Print : |
---|
[544] | 1391 | echo |
---|
| 1392 | IGCM_debug_Print 1 "IGCM_comp_Update" |
---|
| 1393 | echo |
---|
[2] | 1394 | |
---|
[902] | 1395 | typeset ExeNameIn ExeNameOut |
---|
[544] | 1396 | typeset comp compname comptagname |
---|
| 1397 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[902] | 1398 | # Define component |
---|
[544] | 1399 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 1400 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 1401 | |
---|
[544] | 1402 | # Copy executable for this component |
---|
| 1403 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 1404 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[151] | 1405 | |
---|
[622] | 1406 | # If missing executable and DRYRUN is set to 0 or 1 then stop! |
---|
| 1407 | if [ ${DRYRUN} -le 1 ] && [ X${ExeNameIn} != X\"\" ] && [ ! -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
| 1408 | IGCM_debug_Exit "IGCM_comp_Update missing executable ${ExeNameIn}" |
---|
[778] | 1409 | fi |
---|
[236] | 1410 | |
---|
[544] | 1411 | if [ ${Period} -eq 1 ] && [ -f ${R_EXE}/${ExeNameIn} ] ; then |
---|
| 1412 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 1413 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 1414 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
| 1415 | fi |
---|
| 1416 | elif [ -f ${R_EXE}/${ExeNameIn} ] && [ ! -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 1417 | eval IGCM_sys_Cp ${R_EXE}/${ExeNameIn} ${ExeNameOut} |
---|
| 1418 | if [ -f ${RUN_DIR}/${ExeNameOut} ] ; then |
---|
| 1419 | eval IGCM_sys_Chmod +rx ${RUN_DIR}/${ExeNameOut} |
---|
| 1420 | fi |
---|
| 1421 | fi |
---|
[2] | 1422 | |
---|
[544] | 1423 | # Debug Print |
---|
| 1424 | IGCM_debug_Print 1 "Update ${compname} Parameter Files." |
---|
| 1425 | # UPDATE component |
---|
| 1426 | ${comp}_Update |
---|
[2] | 1427 | |
---|
[1375] | 1428 | set -vx |
---|
| 1429 | |
---|
| 1430 | # Read TimeSeries information from XML files, prepare TS directories and do modifications in timeseries_def_${compname}.xml |
---|
| 1431 | if [ -f timeseries_def_${compname}.xml ]; then |
---|
| 1432 | ${libIGCM}/libIGCM_post/xios_parser.py tsquery --file timeseries_def_${compname}.xml > ts.temp.${compname}.txt |
---|
| 1433 | for line in $( cat ts.temp.${compname}.txt ); do |
---|
| 1434 | id=$( echo ${line} | awk -F "," '{print $1}' | awk -F "=" '{print $2}' ) |
---|
| 1435 | output_freq=$( echo ${line} | awk -F "," '{print $2}' | awk -F "=" '{print $2}' ) |
---|
| 1436 | case ${output_freq} in |
---|
| 1437 | *Y|*y) |
---|
| 1438 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_A_Y} |
---|
| 1439 | eval IGCM_comp_modifyXmlFile nonblocker timeseries_def_${compname}.xml ${id} ts_prefix \${R_BUF_${comp}_A_Y}/${config_UserChoices_JobName} |
---|
| 1440 | ;; |
---|
| 1441 | *MO|*mo) |
---|
| 1442 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_A_M} |
---|
| 1443 | eval IGCM_comp_modifyXmlFile nonblocker timeseries_def_${compname}.xml ${id} ts_prefix \${R_BUF_${comp}_A_M}/${config_UserChoices_JobName} |
---|
| 1444 | ;; |
---|
| 1445 | *D|*d) |
---|
| 1446 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_A_D} |
---|
| 1447 | eval IGCM_comp_modifyXmlFile nonblocker timeseries_def_${compname}.xml ${id} ts_prefix \${R_BUF_${comp}_A_D}/${config_UserChoices_JobName} |
---|
| 1448 | ;; |
---|
| 1449 | *S|*s) |
---|
| 1450 | eval IGCM_sys_Mkdir \${R_BUF_${comp}_A_H} |
---|
| 1451 | eval IGCM_comp_modifyXmlFile nonblocker timeseries_def_${compname}.xml ${id} ts_prefix \${R_BUF_${comp}_A_H}/${config_UserChoices_JobName} |
---|
| 1452 | ;; |
---|
| 1453 | esac |
---|
| 1454 | done |
---|
| 1455 | fi |
---|
| 1456 | |
---|
| 1457 | set +vx |
---|
| 1458 | |
---|
[544] | 1459 | done |
---|
[2] | 1460 | |
---|
[544] | 1461 | IGCM_debug_PopStack "IGCM_comp_Update" |
---|
[2] | 1462 | } |
---|
| 1463 | |
---|
| 1464 | #======================================================================= |
---|
| 1465 | function IGCM_comp_Finalize |
---|
| 1466 | { |
---|
[544] | 1467 | IGCM_debug_PushStack "IGCM_comp_Finalize" |
---|
[2] | 1468 | |
---|
[544] | 1469 | # Debug Print : |
---|
| 1470 | echo |
---|
| 1471 | IGCM_debug_Print 1 "IGCM_comp_Finalize" |
---|
| 1472 | echo |
---|
[2] | 1473 | |
---|
[544] | 1474 | typeset ListTextName TextName0 |
---|
| 1475 | typeset comp compname comptagname card ListFilesName FileName0 NbFiles SaveOnArchive |
---|
| 1476 | typeset i i_ file_in file_in_ file_out file_out_ file_outin file_outin_ generic_file_name nb_rebuild_file |
---|
[1165] | 1477 | typeset -Z4 j4 #BASH declare j4 |
---|
[544] | 1478 | typeset list_file nlist_file |
---|
| 1479 | typeset compactoutputs |
---|
[429] | 1480 | |
---|
[1165] | 1481 | # Initialize array hosting list of rebuilded files to copy |
---|
| 1482 | unset rebuildedActionsList |
---|
| 1483 | |
---|
| 1484 | # Text compacting options |
---|
[544] | 1485 | compactoutputs=false |
---|
| 1486 | if [ X${JobType} != XRUN ] ; then |
---|
| 1487 | compactoutputs=true |
---|
| 1488 | elif [ X${config_UserChoices_CompactText} != Xn ] ; then |
---|
| 1489 | compactoutputs=true |
---|
| 1490 | fi |
---|
[433] | 1491 | |
---|
[1043] | 1492 | # Prepare headers for the shell dedicated to offline rebuild |
---|
| 1493 | if [ X${AsynchronousRebuild} = Xtrue ] ; then |
---|
| 1494 | [ ! -d ${RUN_DIR}/REBUILD_${PeriodDateBegin} ] && IGCM_sys_Mkdir ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 1495 | if [ ${DRYRUN} -le 1 ] ; then |
---|
| 1496 | echo "#!/bin/ksh " > ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1497 | echo "function IGCM_FlushRebuild " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1498 | echo "{ " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1499 | echo "IGCM_debug_PushStack \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1500 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1501 | echo "IGCM_debug_Print 1 \"IGCM_FlushRebuild\" " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1502 | echo "echo " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1503 | echo "export R_SAVE=${R_SAVE} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1504 | echo "export R_BUFR=${R_BUFR} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1505 | echo "export R_OUT_KSH=${R_OUT_KSH} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1506 | echo "export R_BUF_KSH=${R_BUF_KSH} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1507 | echo "export config_UserChoices_JobName=${config_UserChoices_JobName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1508 | echo "export config_UserChoices_SpaceName=${config_UserChoices_SpaceName} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1509 | fi |
---|
| 1510 | fi |
---|
| 1511 | |
---|
[544] | 1512 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[902] | 1513 | # Define component |
---|
[544] | 1514 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 1515 | eval comptagname=\${config_ListOfComponents_${comp}[1]} > /dev/null 2>&1 |
---|
[2] | 1516 | |
---|
[544] | 1517 | # Debug Print |
---|
| 1518 | IGCM_debug_Print 1 "Finalize ${comp} : ${compname} component." |
---|
| 1519 | # FINALIZE component |
---|
| 1520 | ${comp}_Finalize |
---|
[2] | 1521 | |
---|
[778] | 1522 | card=${SUBMIT_DIR}/COMP/${compname}.card |
---|
[2] | 1523 | |
---|
[804] | 1524 | # Save Output Text files of models |
---|
| 1525 | #--------------------------------- |
---|
| 1526 | IGCM_debug_Print 2 "Save Output Text files for ${comp} : ${compname} component." |
---|
| 1527 | IGCM_card_DefineArrayFromOption ${card} OutputText List |
---|
| 1528 | ListTextName=${compname}_OutputText_List |
---|
| 1529 | |
---|
| 1530 | eval TextName0=\${${ListTextName}[0]} > /dev/null 2>&1 |
---|
| 1531 | if [ X${TextName0} != X${NULL_STR} ] ; then |
---|
| 1532 | eval NbFiles=\${#${ListTextName}[@]} > /dev/null 2>&1 |
---|
| 1533 | |
---|
| 1534 | (( i=0 )) |
---|
| 1535 | until [ $i -eq $NbFiles ]; do |
---|
| 1536 | eval file_in=\${${ListTextName}[$i]} > /dev/null 2>&1 |
---|
| 1537 | eval file_out=${PREFIX}_${file_in} |
---|
| 1538 | |
---|
| 1539 | (( i=i+1 )) |
---|
| 1540 | |
---|
| 1541 | unset list_file |
---|
| 1542 | #set +A list_file -- $( ls ${file_in}* | sort 2>/dev/null ) |
---|
| 1543 | # result for a a1 a10 a2 with file_in=a a a1 a2 a10 |
---|
| 1544 | set +A list_file -- $( [ -f ${file_in} ] && ls ${file_in} ; for i in $(ls ${file_in}* 2>/dev/null | sed "s/${file_in}//" | sort -n) ; do ls ${file_in}$i ; done ) |
---|
| 1545 | nlist_file=${#list_file[@]} |
---|
| 1546 | if [ ${nlist_file} -gt 1 ] ; then |
---|
| 1547 | if ( ${compactoutputs} ) ; then |
---|
| 1548 | IGCM_debug_Print 2 "Parallelism of Text Output with ${nlist_file} files." |
---|
| 1549 | IGCM_debug_Print 2 "Compact files in ${file_out} : " ${list_file[*]} |
---|
| 1550 | echo ${list_file[*]} > ${file_out} |
---|
| 1551 | echo "" >> ${file_out} |
---|
| 1552 | |
---|
| 1553 | (( i_ = 0 )) |
---|
[1080] | 1554 | for file in ${list_file[@]} ; do |
---|
[804] | 1555 | echo "_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ " >> ${file_out} |
---|
| 1556 | echo "| " ${i_} " " ${file} >> ${file_out} |
---|
| 1557 | echo "- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - " >> ${file_out} |
---|
[999] | 1558 | cat ${file} | sed "s/\(.*\)/${i_}\1/" >> ${file_out} |
---|
[804] | 1559 | echo "" >> ${file_out} |
---|
| 1560 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
---|
| 1561 | (( i_ = i_ + 1 )) |
---|
| 1562 | done |
---|
[1080] | 1563 | if ( ${ExecutionFail} ) ; then |
---|
| 1564 | IGCM_sys_Cp ${file_out} ${SUBMIT_DIR}/Debug |
---|
| 1565 | fi |
---|
| 1566 | |
---|
[804] | 1567 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1568 | eval IGCM_sys_PutBuffer_Out ${file_out} \${R_BUF_${comp}_D}/${file_out} |
---|
| 1569 | else |
---|
| 1570 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}_D}/${file_out} |
---|
| 1571 | fi |
---|
[1080] | 1572 | |
---|
[804] | 1573 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_out}" > /dev/null 2>&1 |
---|
[1080] | 1574 | else |
---|
| 1575 | for file in ${list_file[@]} ; do |
---|
| 1576 | if ( ${ExecutionFail} ) ; then |
---|
| 1577 | IGCM_sys_Cp ${file} ${SUBMIT_DIR}/Debug/${PREFIX}_${file} |
---|
| 1578 | fi |
---|
[804] | 1579 | |
---|
| 1580 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1581 | eval IGCM_sys_PutBuffer_Out ${file} \${R_BUF_${comp}_D}/${PREFIX}_${file} |
---|
| 1582 | else |
---|
| 1583 | eval IGCM_sys_Put_Out ${file} \${R_OUT_${comp}_D}/${PREFIX}_${file} |
---|
| 1584 | fi |
---|
[1080] | 1585 | |
---|
[804] | 1586 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file}" > /dev/null 2>&1 |
---|
| 1587 | done |
---|
| 1588 | fi |
---|
| 1589 | else |
---|
| 1590 | if ( [ -f ${file_in}_0000 ] || [ -f ${file_in}0 ] ) ; then |
---|
| 1591 | eval IGCM_sys_Mv ${file_in}* ${file_in} |
---|
| 1592 | fi |
---|
[1080] | 1593 | |
---|
| 1594 | if ( ${ExecutionFail} ) ; then |
---|
| 1595 | IGCM_sys_Cp ${file_in} ${SUBMIT_DIR}/Debug/${file_out} |
---|
| 1596 | fi |
---|
| 1597 | |
---|
[804] | 1598 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1599 | eval IGCM_sys_PutBuffer_Out ${file_in} \${R_BUF_${comp}_D}/${file_out} |
---|
| 1600 | else |
---|
| 1601 | eval IGCM_sys_Put_Out ${file_in} \${R_OUT_${comp}_D}/${file_out} |
---|
| 1602 | fi |
---|
| 1603 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
| 1604 | fi |
---|
| 1605 | done |
---|
| 1606 | fi |
---|
| 1607 | |
---|
[544] | 1608 | # Save Restarts files |
---|
| 1609 | #-------------------- |
---|
| 1610 | IGCM_debug_Print 2 "Save Restart files for ${comp} : ${compname} component." |
---|
| 1611 | IGCM_card_DefineArrayFromOption ${card} RestartFiles List |
---|
| 1612 | ListFilesName=${compname}_RestartFiles_List |
---|
| 1613 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[778] | 1614 | |
---|
[544] | 1615 | if ( [ X${FileName0} != X${NULL_STR} ] && [ X${FileName0} != XNONE ] ) ; then |
---|
| 1616 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[778] | 1617 | |
---|
[544] | 1618 | (( i=0 )) |
---|
| 1619 | until [ $i -ge $NbFiles ]; do |
---|
[778] | 1620 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 1621 | eval file_in=${file_in_} |
---|
[2] | 1622 | |
---|
[778] | 1623 | (( i_ = i+1 )) |
---|
| 1624 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 1625 | eval file_out=${file_out_} |
---|
[151] | 1626 | |
---|
[778] | 1627 | (( i_ = i+2 )) |
---|
| 1628 | eval file_outin_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 1629 | eval file_outin=${file_outin_} |
---|
[151] | 1630 | |
---|
[778] | 1631 | generic_restart_file_name_in=$( basename ${file_in} .nc ) |
---|
| 1632 | generic_restart_file_name_out=$( basename ${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} .nc ) |
---|
| 1633 | generic_restart_file_name_outin=$( basename ${file_outin} .nc ) |
---|
[2] | 1634 | |
---|
[902] | 1635 | nb_restart_file=$( ls ${generic_restart_file_name_in}_????.nc 2>/dev/null | wc -l ) |
---|
[778] | 1636 | if [ ${nb_restart_file} -gt 1 ] ; then |
---|
[821] | 1637 | j=0 # BASH LINE NOT NEEDED |
---|
| 1638 | # BASH for j4 in in $( eval echo {0000..$(( nb_restart_file - 1 ))} ) ; do |
---|
| 1639 | until [ $j -ge ${nb_restart_file} ]; do # BASH LINE NOT NEEDED |
---|
| 1640 | j4=${j} # BASH LINE NOT NEEDED |
---|
[778] | 1641 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1642 | eval IGCM_sys_PutBuffer_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_BUF_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
---|
| 1643 | else |
---|
| 1644 | eval IGCM_sys_Put_Rest ${generic_restart_file_name_in}_${j4}.nc \${R_OUT_${comp}_R}/${generic_restart_file_name_out}_${j4}.nc |
---|
| 1645 | fi |
---|
| 1646 | if [ ! ${file_in} = ${file_outin} ] ; then |
---|
| 1647 | if ( ${ExitFlag} ) ; then |
---|
| 1648 | echo "IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc not executed." |
---|
| 1649 | else |
---|
| 1650 | IGCM_sys_Mv ${generic_restart_file_name_in}_${j4}.nc ${generic_restart_file_name_outin}_${j4}.nc |
---|
| 1651 | fi |
---|
| 1652 | fi |
---|
[821] | 1653 | (( j=j+1 )) # BASH LINE NOT NEEDED |
---|
[778] | 1654 | done |
---|
| 1655 | else |
---|
| 1656 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1657 | eval IGCM_sys_PutBuffer_Rest ${file_in} \${R_BUF_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
---|
| 1658 | else |
---|
| 1659 | eval IGCM_sys_Put_Rest ${file_in} \${R_OUT_${comp}_R}/${config_UserChoices_JobName}_${PeriodDateEnd}_${file_out} |
---|
| 1660 | fi |
---|
| 1661 | if [ ! ${file_in} = ${file_outin} ] ; then |
---|
| 1662 | if ( ${ExitFlag} ) ; then |
---|
| 1663 | echo "IGCM_sys_Mv ${file_in} ${file_outin} not executed." |
---|
| 1664 | else |
---|
| 1665 | IGCM_sys_Mv ${file_in} ${file_outin} |
---|
| 1666 | fi |
---|
| 1667 | fi |
---|
| 1668 | fi |
---|
| 1669 | |
---|
| 1670 | (( i=i+3 )) |
---|
[544] | 1671 | done |
---|
| 1672 | else |
---|
| 1673 | if [ X${FileName0} != XNONE ] ; then |
---|
[778] | 1674 | IGCM_debug_Exit "IGCM_comp_Finalize : No file in restart list for ${compname}." |
---|
[544] | 1675 | else |
---|
[778] | 1676 | IGCM_debug_Print 1 "IGCM_comp_Finalize : NONE specified in Restart List ${compname}." |
---|
[544] | 1677 | fi |
---|
| 1678 | fi |
---|
[2] | 1679 | |
---|
[544] | 1680 | # Save Output files |
---|
| 1681 | #------------------ |
---|
| 1682 | IGCM_debug_Print 2 "Save Output files for ${comp} : ${compname} component." |
---|
| 1683 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 1684 | ListFilesName=${compname}_OutputFiles_List |
---|
| 1685 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
[2] | 1686 | |
---|
[544] | 1687 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
| 1688 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
[149] | 1689 | |
---|
[544] | 1690 | (( i=0 )) |
---|
| 1691 | until [ $i -ge $NbFiles ]; do |
---|
[778] | 1692 | SaveOnArchive=true |
---|
| 1693 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 1694 | eval file_in=${file_in_} |
---|
| 1695 | (( i_ = i+1 )) |
---|
| 1696 | eval file_out_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 1697 | eval file_out=${file_out_} |
---|
| 1698 | # |
---|
| 1699 | # Override file_out path remplacing R_SAVE by R_BUFR |
---|
| 1700 | # |
---|
| 1701 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1702 | file_out=$( echo $file_out | sed "s:^$R_SAVE:$R_BUFR:" ) |
---|
| 1703 | fi |
---|
| 1704 | # |
---|
| 1705 | # Not necessarily the best option. /!\ Potential side effects /!\ |
---|
| 1706 | # |
---|
| 1707 | (( i_ = i+2 )) |
---|
| 1708 | eval flag_post=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
---|
| 1709 | # |
---|
| 1710 | generic_file_name=$( basename ${file_in} .nc ) |
---|
| 1711 | nb_rebuild_file=$( ls | grep "^${generic_file_name}_[0-9]*.nc" | wc -l ) |
---|
| 1712 | # |
---|
| 1713 | if ( [ ${nb_rebuild_file} -eq 1 ] && [ -f ${generic_file_name}_0000.nc ] ) ; then |
---|
[804] | 1714 | IGCM_debug_Print 2 "Parallelism with 1 file. Rebuilding ${file_in} not needed" |
---|
[778] | 1715 | IGCM_sys_Mv ${generic_file_name}_0000.nc ${file_in} |
---|
| 1716 | elif [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
[804] | 1717 | IGCM_debug_Print 2 "Parallelism detected and rebuilding ${file_in} is needed" |
---|
[778] | 1718 | if [ X${AsynchronousRebuild} = Xfalse ] ; then |
---|
| 1719 | IGCM_debug_Print 2 "Rebuilding ${file_in} online" |
---|
[1399] | 1720 | # |
---|
| 1721 | # for output.abort file, let use rebuild_NEMO : 13s instead of 20 mn. |
---|
| 1722 | if [ ${file_in} = output.abort.nc ] ; then |
---|
| 1723 | IGCM_sys_rebuild_nemo ${generic_file_name} ${nb_rebuild_file} "nc" ${generic_file_name}_[0-9]*.nc |
---|
| 1724 | else |
---|
| 1725 | IGCM_sys_rebuild ${file_in} ${generic_file_name}_[0-9]*.nc |
---|
| 1726 | fi |
---|
[778] | 1727 | else |
---|
| 1728 | IGCM_debug_Print 2 "Preparing offline rebuild for ${file_in}" |
---|
[980] | 1729 | IGCM_sys_Mv ${generic_file_name}_[0-9]*.nc ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
[544] | 1730 | |
---|
[778] | 1731 | # Prepare the shell dedicated to offline rebuild |
---|
| 1732 | if [ $DRYRUN -le 1 ]; then |
---|
[694] | 1733 | if [ ${file_in} = histstn.nc ] ; then |
---|
| 1734 | echo "IGCM_sys_rebuild_station ${file_in} ${generic_file_name}_*.nc" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1735 | else |
---|
[980] | 1736 | echo "IGCM_sys_rebuild ${file_in} ${generic_file_name}_[0-9]*.nc" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[694] | 1737 | fi |
---|
[1206] | 1738 | echo "IGCM_debug_Verif_Exit" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[778] | 1739 | fi |
---|
| 1740 | # |
---|
| 1741 | # Load Patch we need to apply and apply |
---|
| 1742 | if [ $DRYRUN -le 1 ]; then |
---|
| 1743 | if [ X$( eval echo \${${compname}_${flag_post}_Patches[0]} ) != X${NULL_STR} ]; then |
---|
[1080] | 1744 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ) ; do |
---|
[778] | 1745 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1746 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[1206] | 1747 | echo "IGCM_debug_Verif_Exit " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[778] | 1748 | done |
---|
| 1749 | fi |
---|
| 1750 | fi |
---|
| 1751 | # |
---|
| 1752 | if [ $DRYRUN -le 1 ]; then |
---|
| 1753 | if [ X${Pack} = Xtrue ] ; then |
---|
[1165] | 1754 | rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_sys_PutBuffer_Out ${file_in} ${file_out}" |
---|
[778] | 1755 | else |
---|
[1165] | 1756 | rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_sys_Put_Out ${file_in} ${file_out}" |
---|
[778] | 1757 | fi |
---|
[1206] | 1758 | rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_debug_Verif_Exit" |
---|
[1165] | 1759 | rebuildedActionsList[${#rebuildedActionsList[*]}]="IGCM_sys_Rm ${generic_file_name}_[0-9]*.nc" |
---|
[778] | 1760 | fi |
---|
| 1761 | SaveOnArchive=false |
---|
| 1762 | fi |
---|
| 1763 | fi |
---|
| 1764 | # |
---|
| 1765 | if [ ${SaveOnArchive} = true ] ; then |
---|
| 1766 | # |
---|
| 1767 | # Rebuild has been done online or it was not needed |
---|
| 1768 | # |
---|
| 1769 | # If we need to apply a patch we use TMP DIRECTORY before ARCHIVING if asynchronous rebuild is on |
---|
| 1770 | # |
---|
| 1771 | thereisapatch=$( eval echo \${${compname}_${flag_post}_Patches[0]} ) |
---|
[1289] | 1772 | if ( [ ! X${thereisapatch} = X${NULL_STR} ] && [ ! X${thereisapatch} = X ] && [ X${AsynchronousRebuild} = Xtrue ] && [ -f ${file_in} ] ) ; then |
---|
[778] | 1773 | IGCM_sys_Mv ${file_in} ${RUN_DIR}/REBUILD_${PeriodDateBegin} |
---|
| 1774 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=REBUILD_${PeriodDateBegin}/${file_in} > /dev/null 2>&1 |
---|
| 1775 | # |
---|
| 1776 | if [ $DRYRUN -le 1 ]; then |
---|
[1080] | 1777 | for Patch in $( eval echo \${${compname}_${flag_post}_Patches[*]} ) ; do |
---|
[778] | 1778 | echo ". ${libIGCM_POST}/libIGCM_post/IGCM_${Patch}.ksh" >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1779 | echo "IGCM_${Patch} ${file_in} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[1206] | 1780 | echo "IGCM_debug_Verif_Exit " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[778] | 1781 | done |
---|
| 1782 | # |
---|
| 1783 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1784 | echo "IGCM_sys_PutBuffer_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1785 | else |
---|
| 1786 | echo "IGCM_sys_Put_Out ${file_in} ${file_out} " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1787 | fi |
---|
[1206] | 1788 | echo "IGCM_debug_Verif_Exit " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[778] | 1789 | # |
---|
| 1790 | fi |
---|
| 1791 | else |
---|
| 1792 | # |
---|
| 1793 | # No Patch, No Asynchronous rebuild, online rebuild has been done or was not needed |
---|
| 1794 | # |
---|
| 1795 | if [ X${Pack} = Xtrue ] ; then |
---|
| 1796 | IGCM_sys_PutBuffer_Out ${file_in} ${file_out} |
---|
| 1797 | else |
---|
| 1798 | IGCM_sys_Put_Out ${file_in} ${file_out} |
---|
| 1799 | fi |
---|
| 1800 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${file_in}" > /dev/null 2>&1 |
---|
| 1801 | if [ ${nb_rebuild_file} -gt 1 ] ; then |
---|
| 1802 | for DelFile in $( ls | grep "${generic_file_name}[_0-9]*.nc" ) ; do |
---|
| 1803 | eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${DelFile} > /dev/null 2>&1 |
---|
| 1804 | done |
---|
| 1805 | fi |
---|
| 1806 | fi |
---|
| 1807 | fi |
---|
| 1808 | (( i=i+3 )) |
---|
[544] | 1809 | done |
---|
| 1810 | fi |
---|
| 1811 | echo |
---|
| 1812 | done |
---|
[1165] | 1813 | # Append the sync call and the copy sequence to the IGCM_FlushRebuild function if needed |
---|
| 1814 | if [ ${#rebuildedActionsList[*]} -ne 0 ] ; then |
---|
[1166] | 1815 | echo "IGCM_sys_sync " >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
[1165] | 1816 | i=0 |
---|
| 1817 | until [ ${i} -ge ${#rebuildedActionsList[*]} ]; do |
---|
| 1818 | echo ${rebuildedActionsList[$i]} >> ${RUN_DIR}/REBUILD_${PeriodDateBegin}/rebuild.ksh |
---|
| 1819 | (( i=i+1 )) |
---|
| 1820 | done |
---|
| 1821 | fi |
---|
[544] | 1822 | IGCM_debug_PopStack "IGCM_comp_Finalize" |
---|
[2] | 1823 | } |
---|