[314] | 1 | #-Q- cesium #!/bin/ksh |
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| 2 | #-Q- cesium ###################### |
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| 3 | #-Q- cesium ## CESIUM CEA ## |
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| 4 | #-Q- cesium ###################### |
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| 5 | #-Q- cesium #MSUB -r ATL_ADD # Nom du job |
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| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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| 7 | #-Q- cesium #MSUB -n 2 # Reservation du processus |
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| 8 | #-Q- cesium #MSUB -c 4 # Reservation du core |
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| 9 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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| 10 | #-Q- cesium #MSUB -E "-j o" |
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| 11 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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[622] | 12 | #-Q- curie ###################### |
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| 13 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 14 | #-Q- curie ###################### |
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[626] | 15 | #-Q- curie #MSUB -r ATL_ADD # Nom du job |
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[622] | 16 | #-Q- curie #MSUB -eo |
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| 17 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 18 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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[741] | 19 | #-Q- curie #MSUB -q xlarge |
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[704] | 20 | #-Q- curie #MSUB -Q normal |
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[681] | 21 | #-Q- curie set +x |
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[2] | 22 | #-Q- platine #!/usr/bin/ksh |
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| 23 | #-Q- platine ################## |
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| 24 | #-Q- platine ## PLATINE CEA ## |
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| 25 | #-Q- platine ################## |
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[15] | 26 | #-Q- platine #BSUB -J ATL_ADD # Nom du job |
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[2] | 27 | #-Q- platine #BSUB -N # message a la fin du job |
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| 28 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 29 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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[18] | 30 | #-Q- platine #BSUB -q post # Passage en queue post |
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[426] | 31 | #-Q- platine #BSUB -L /bin/ksh |
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[59] | 32 | #-Q- sx8brodie #!/bin/ksh |
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[2] | 33 | #-Q- sx8brodie ####################### |
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| 34 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 35 | #-Q- sx8brodie ####################### |
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[58] | 36 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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[504] | 37 | #-Q- sx8brodie # @ wall_clock_limit = 1:00:00 |
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[58] | 38 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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[60] | 39 | #-Q- sx8brodie # @ job_name = ATL_ADD |
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[58] | 40 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 41 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 42 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 43 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 44 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 45 | #-Q- sx8brodie # @ notification = error |
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[178] | 46 | #-Q- sx8brodie # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER |
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[58] | 47 | #-Q- sx8brodie # @ queue |
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[68] | 48 | #-Q- aix6 #!/bin/ksh |
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| 49 | #-Q- aix6 ####################### |
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| 50 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 51 | #-Q- aix6 ####################### |
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| 52 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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[504] | 53 | #-Q- aix6 # @ wall_clock_limit = 1:00:00 |
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[68] | 54 | #-Q- aix6 # Nom du travail LoadLeveler |
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| 55 | #-Q- aix6 # @ job_name = ATL_ADD |
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[108] | 56 | #-Q- aix6 # Fichier de sortie standard du travail |
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[68] | 57 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 58 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 59 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 60 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 61 | #-Q- aix6 # @ notification = error |
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[178] | 62 | #-Q- aix6 # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER |
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[68] | 63 | #-Q- aix6 # @ queue |
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[386] | 64 | #-Q- ulam #!/bin/ksh |
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| 65 | #-Q- ulam ####################### |
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| 66 | #-Q- ulam ## ULAM IDRIS ## |
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| 67 | #-Q- ulam ####################### |
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| 68 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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[500] | 69 | #-Q- ulam # @ wall_clock_limit = 1:00:00 |
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[386] | 70 | #-Q- ulam # Nom du travail LoadLeveler |
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| 71 | #-Q- ulam # @ job_name = ATL_ADD |
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| 72 | #-Q- ulam # Fichier de sortie standard du travail |
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| 73 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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| 74 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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| 75 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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| 76 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 77 | #-Q- ulam # @ notification = error |
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| 78 | #-Q- ulam # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER |
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| 79 | #-Q- ulam # @ queue |
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[2] | 80 | #-Q- sx8mercure #!/bin/ksh |
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| 81 | #-Q- sx8mercure ###################### |
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| 82 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 83 | #-Q- sx8mercure ###################### |
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[15] | 84 | #-Q- sx8mercure #PBS -N ATL_ADD # Nom du job |
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[2] | 85 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 86 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 87 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 88 | #-Q- sx8mercure #PBS -l cputim_job=2:00:00 # Limite temps a 2 heures |
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[299] | 89 | #-Q- sx8mercure #PBS -q scalaire |
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[640] | 90 | #-Q- sx8mercure #PBS -r n |
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[172] | 91 | #-Q- sx9mercure #!/bin/ksh |
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[616] | 92 | #-Q- sx9mercure ###################### |
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| 93 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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| 94 | #-Q- sx9mercure ###################### |
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| 95 | #-Q- sx9mercure #PBS -N ATL_ADD # Nom du job |
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| 96 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 97 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 98 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 99 | #-Q- sx9mercure #PBS -l elapstim_req=2:00:00 # Limite temps a 2 heures |
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| 100 | #-Q- sx9mercure #PBS -q scalaire |
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[640] | 101 | #-Q- sx9mercure #PBS -r n |
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[222] | 102 | #-Q- titane #!/bin/ksh |
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| 103 | #-Q- titane ###################### |
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| 104 | #-Q- titane ## TITANE CEA ## |
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| 105 | #-Q- titane ###################### |
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[544] | 106 | #-Q- titane #MSUB -r ATL_ADD # Nom du job |
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| 107 | #-Q- titane #MSUB -eo |
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| 108 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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[222] | 109 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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[544] | 110 | #-Q- titane #MSUB -q mono |
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[643] | 111 | #-Q- titane #MSUB -E '-rn' |
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[2] | 112 | #-Q- default #!/bin/ksh |
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| 113 | #-Q- default ################## |
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| 114 | #-Q- default ## DEFAULT HOST ## |
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| 115 | #-Q- default ################## |
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| 116 | |
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[373] | 117 | #************************************************************** |
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| 118 | # Author: Sebastien Denvil |
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| 119 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 120 | # $Revision:: $ Revision of last commit |
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| 121 | # $Author:: $ Author of last commit |
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| 122 | # $Date:: $ Date of last commit |
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[2] | 123 | # IPSL (2006) |
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| 124 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 125 | # |
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| 126 | #************************************************************** |
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[2] | 127 | |
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[108] | 128 | #set -eu |
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| 129 | #set -vx |
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| 130 | |
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[2] | 131 | date |
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| 132 | |
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| 133 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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[68] | 134 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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[386] | 135 | #-Q- ulam export OMP_NUM_THREADS=1 |
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[2] | 136 | |
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[712] | 137 | #D- Task type (computing or post-processing) |
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| 138 | TaskType=post-processing |
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| 139 | |
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[2] | 140 | ######################################################################### |
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| 141 | |
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[108] | 142 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 143 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 144 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 145 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 146 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 147 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 148 | #------- |
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| 149 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[731] | 150 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[2] | 151 | |
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| 152 | ####################################################################### |
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| 153 | |
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| 154 | #set -vx |
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| 155 | |
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[108] | 156 | #=========================================== |
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[2] | 157 | R_ATLAS=ATLAS/SE_${YEARS} |
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| 158 | R_OUT_OCE=${R_SAVE}/OCE |
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| 159 | |
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[34] | 160 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_ADD_${YEARS} |
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| 161 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 162 | IGCM_sys_Cd ${RUN_DIR} |
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[2] | 163 | |
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[436] | 164 | # ------------------------------------------------------------------ |
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| 165 | # Test if all was right before proceeding further |
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| 166 | # ------------------------------------------------------------------ |
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| 167 | IGCM_debug_Verif_Exit_Post |
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| 168 | |
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[2] | 169 | # -------------------------------------------- |
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| 170 | # Insert your commands between III...III lines |
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| 171 | # and precise produced directories to save |
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| 172 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 173 | |
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[34] | 174 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${RUN_DIR}/SE_grid_T.nc |
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| 175 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc ${RUN_DIR}/SE_grid_U.nc |
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| 176 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc ${RUN_DIR}/SE_grid_V.nc |
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| 177 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc ${RUN_DIR}/SE_grid_W.nc |
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[2] | 178 | |
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[34] | 179 | atlas -o ${RUN_DIR}/${R_ATLAS}/ADD -p landscape=true,angle=-90,nup=1x1 ${FER_ATLAS}/atlas_p_ORCA2_add_*.cfg ${config_UserChoices_JobName} |
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[2] | 180 | |
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| 181 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 182 | |
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| 183 | # Put ferret journal files together |
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| 184 | for file in $( ls ${R_ATLAS}/ADD/*/*jnl ) ; do |
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| 185 | echo -e "\n\n################################" ; |
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| 186 | echo -e "$file\n" ; cat $file ; |
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| 187 | done > ${R_ATLAS}/ADD/allferretscript.txt |
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| 188 | |
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| 189 | # Clear some files |
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| 190 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
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| 191 | |
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| 192 | # Save files |
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| 193 | IGCM_sys_Put_Dir ATLAS ${R_SAVE} |
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| 194 | |
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| 195 | IGCM_sys_Rm -Rf ATLAS |
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| 196 | IGCM_sys_Rm -f SE_grid_?.nc |
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| 197 | |
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| 198 | # DODS copy |
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[67] | 199 | IGCM_sys_TestDirArchive ${R_SAVE}/${R_ATLAS} |
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| 200 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
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