[622] | 1 | #-Q- curie ###################### |
---|
| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
---|
| 3 | #-Q- curie ###################### |
---|
[837] | 4 | #-Q- curie #MSUB -r ATL_LMDZ # Nom du job |
---|
[622] | 5 | #-Q- curie #MSUB -eo |
---|
| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
---|
[880] | 7 | #-Q- curie #MSUB -T 7200 # Limite de temps elapsed du job |
---|
[1154] | 8 | #-Q- curie #MSUB -q ::default_node:: |
---|
[704] | 9 | #-Q- curie #MSUB -Q normal |
---|
[837] | 10 | #-Q- curie #MSUB -A ::default_project:: |
---|
[681] | 11 | #-Q- curie set +x |
---|
[770] | 12 | #-Q- ada #!/bin/ksh |
---|
| 13 | #-Q- ada ####################### |
---|
[929] | 14 | #-Q- ada ## ADA IDRIS ## |
---|
[770] | 15 | #-Q- ada ####################### |
---|
[848] | 16 | #-Q- ada # @ job_type = serial |
---|
| 17 | #-Q- ada # @ requirements = (Feature == "prepost") |
---|
[770] | 18 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
---|
| 19 | #-Q- ada # @ wall_clock_limit = 1:00:00 |
---|
| 20 | #-Q- ada # Nom du travail LoadLeveler |
---|
| 21 | #-Q- ada # @ job_name = ATL_LMDZ |
---|
[837] | 22 | #-Q- ada # Fichier de sortie standard du travail |
---|
[770] | 23 | #-Q- ada # @ output = $(job_name).$(jobid) |
---|
| 24 | #-Q- ada # Fichier de sortie d'erreur du travail |
---|
| 25 | #-Q- ada # @ error = $(job_name).$(jobid) |
---|
| 26 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 27 | #-Q- ada # @ notification = error |
---|
[1201] | 28 | #-Q- ada # @ environment = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit) |
---|
[770] | 29 | #-Q- ada # @ queue |
---|
[929] | 30 | #-Q- lxiv8 ###################### |
---|
| 31 | #-Q- lxiv8 ## OBELIX LSCE ## |
---|
| 32 | #-Q- lxiv8 ###################### |
---|
| 33 | #-Q- lxiv8 #PBS -N ATL_LMDZ |
---|
| 34 | #-Q- lxiv8 #PBS -m a |
---|
| 35 | #-Q- lxiv8 #PBS -j oe |
---|
| 36 | #-Q- lxiv8 #PBS -q test |
---|
| 37 | #-Q- lxiv8 #PBS -o ATL_LMDZ.$$ |
---|
| 38 | #-Q- lxiv8 #PBS -S /bin/ksh |
---|
[1184] | 39 | #-Q- ifort_CICLAD ###################### |
---|
| 40 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
---|
| 41 | #-Q- ifort_CICLAD ###################### |
---|
| 42 | #-Q- ifort_CICLAD #PBS -N ATL_LMDZ |
---|
| 43 | #-Q- ifort_CICLAD #PBS -m a |
---|
| 44 | #-Q- ifort_CICLAD #PBS -j oe |
---|
| 45 | #-Q- ifort_CICLAD #PBS -q std |
---|
| 46 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
---|
[2] | 47 | #-Q- default #!/bin/ksh |
---|
| 48 | #-Q- default ################## |
---|
| 49 | #-Q- default ## DEFAULT HOST ## |
---|
| 50 | #-Q- default ################## |
---|
| 51 | |
---|
[373] | 52 | #************************************************************** |
---|
| 53 | # Author: Sebastien Denvil |
---|
| 54 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
---|
| 55 | # $Revision:: $ Revision of last commit |
---|
| 56 | # $Author:: $ Author of last commit |
---|
| 57 | # $Date:: $ Date of last commit |
---|
[2] | 58 | # IPSL (2006) |
---|
| 59 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
---|
[373] | 60 | # |
---|
| 61 | #************************************************************** |
---|
[2] | 62 | |
---|
[108] | 63 | #set -eu |
---|
| 64 | #set -vx |
---|
| 65 | |
---|
[2] | 66 | date |
---|
| 67 | |
---|
[770] | 68 | #-Q- ada export OMP_NUM_THREADS=1 |
---|
[2] | 69 | |
---|
[712] | 70 | #D- Task type (computing or post-processing) |
---|
| 71 | TaskType=post-processing |
---|
| 72 | |
---|
[2] | 73 | ###################################################################### |
---|
| 74 | |
---|
[108] | 75 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 76 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 77 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
| 78 | #------- |
---|
| 79 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
[731] | 80 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
---|
[832] | 81 | #------- |
---|
[1192] | 82 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
---|
| 83 | IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
| 84 | #------- |
---|
[832] | 85 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
---|
| 86 | ( ${DEBUG_debug} ) && IGCM_card_Check |
---|
| 87 | ( ${DEBUG_debug} ) && IGCM_date_Check |
---|
[2] | 88 | |
---|
| 89 | ###################################################################### |
---|
| 90 | |
---|
[108] | 91 | #set -vx |
---|
[2] | 92 | |
---|
[436] | 93 | # ------------------------------------------------------------------ |
---|
| 94 | # Test if all was right before proceeding further |
---|
| 95 | # ------------------------------------------------------------------ |
---|
| 96 | IGCM_debug_Verif_Exit_Post |
---|
| 97 | |
---|
[263] | 98 | if [ ${StandAlone} = true ] ; then |
---|
| 99 | CARD_DIR=${SUBMIT_DIR} |
---|
| 100 | else |
---|
[647] | 101 | CARD_DIR=${RUN_DIR_PATH} |
---|
[640] | 102 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
---|
| 103 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
---|
| 104 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
---|
| 105 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
---|
[263] | 106 | fi |
---|
[727] | 107 | |
---|
| 108 | #================================== |
---|
[263] | 109 | # First of all |
---|
| 110 | # |
---|
[727] | 111 | # Read libIGCM compatibility version in config.card |
---|
| 112 | # Read UserChoices section |
---|
| 113 | # Read Ensemble section |
---|
| 114 | # Read Post section |
---|
| 115 | # Define all netcdf output directories |
---|
[263] | 116 | #================================== |
---|
[727] | 117 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
---|
[263] | 118 | |
---|
[1198] | 119 | # ------------------------------------------------------------------ |
---|
| 120 | # Activate BigBrother so as to supervise this job |
---|
| 121 | # ------------------------------------------------------------------ |
---|
| 122 | IGCM_debug_BigBro_Initialize |
---|
| 123 | |
---|
| 124 | #================================== |
---|
| 125 | # Then set up several directories |
---|
| 126 | #================================== |
---|
[2] | 127 | R_ATLAS=ATLAS/SE_${YEARS} |
---|
| 128 | R_OUT_ATM=${R_SAVE}/ATM |
---|
[370] | 129 | DIR_OUT=${DIR_OUT:=SE} |
---|
[34] | 130 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_LMDZ_${YEARS} |
---|
[1198] | 131 | IGCM_sys_MkdirArchive ${R_FIGR} |
---|
[34] | 132 | IGCM_sys_MkdirWork ${RUN_DIR} |
---|
| 133 | IGCM_sys_Cd ${RUN_DIR} |
---|
[2] | 134 | |
---|
| 135 | # -------------------------------------------- |
---|
[906] | 136 | # Insert your commands between III...III lines |
---|
[2] | 137 | # and precise produced directories to save |
---|
| 138 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
---|
| 139 | |
---|
[370] | 140 | IGCM_sys_Get ${R_OUT_ATM}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc ${RUN_DIR} |
---|
[2] | 141 | |
---|
[206] | 142 | # Only LMDZ4 output have Alt variables |
---|
| 143 | DetectLev=$( ncdump -h ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc | grep "Alt(Alt)" | wc -l ) |
---|
| 144 | # |
---|
| 145 | [ ${DetectLev} = 1 ] && LMDZ=LMDZ4 || LMDZ=LMDZ3.3 |
---|
| 146 | # |
---|
| 147 | atlas -o ${RUN_DIR}/${R_ATLAS}/ATM -l ${FER_ATLAS}/atlas_p_${LMDZ}_diag1_*.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc |
---|
[2] | 148 | |
---|
| 149 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
---|
| 150 | |
---|
| 151 | # Put ferret journal files together |
---|
[906] | 152 | for file in $( ls ${R_ATLAS}/ATM/*/*jnl ) ; do |
---|
| 153 | echo -e "\n\n################################" ; |
---|
| 154 | echo -e "$file\n" ; cat $file ; |
---|
[2] | 155 | done > ${R_ATLAS}/ATM/allferretscript.txt |
---|
| 156 | |
---|
| 157 | # Clear some files |
---|
| 158 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
---|
| 159 | |
---|
| 160 | # Save files |
---|
[587] | 161 | IGCM_sys_Put_Dir ATLAS ${R_FIGR} |
---|
[2] | 162 | IGCM_sys_Rm -Rf ATLAS |
---|
| 163 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc |
---|
| 164 | |
---|
| 165 | # DODS copy |
---|
[903] | 166 | if [ X${config_Post_DodsCopy} = XTRUE ] ; then |
---|
| 167 | IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS} |
---|
| 168 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
---|
| 169 | fi |
---|
[590] | 170 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[203] | 171 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
[1198] | 172 | |
---|
| 173 | # ------------------------------------------------------------------ |
---|
| 174 | # Finalize BigBrother to inform that the jobs end |
---|
| 175 | # ------------------------------------------------------------------ |
---|
| 176 | IGCM_debug_BigBro_Finalize |
---|