source: trunk/libIGCM/AA_atlas_LMDZ @ 1456

#-Q- curie ######################
#-Q- curie ## CURIE   TGCC/CEA ##
#-Q- curie ######################
#-Q- curie #MSUB -r ATL_LMDZ       # Nom du job
#-Q- curie #MSUB -eo
#-Q- curie #MSUB -n 1              # Reservation du processus
#-Q- curie #MSUB -T 7200          # Limite de temps elapsed du job
#-Q- curie #MSUB -q ::default_node::
#-Q- curie #MSUB -c ::default_core::
#-Q- curie #MSUB -Q normal
#-Q- curie #MSUB -A ::default_project::
#-Q- curie set +x
#-Q- irene ######################
#-Q- irene ## IRENE   TGCC/CEA ##
#-Q- irene ######################
#-Q- irene #MSUB -r ATL_LMDZ      # Job name
#-Q- irene #MSUB -eo
#-Q- irene #MSUB -n 1
#-Q- irene #MSUB -T 7200          # Maximum elapsed time
#-Q- irene #MSUB -q skylake 
#-Q- irene #MSUB -c 4
#-Q- irene #MSUB -Q normal
#-Q- irene #MSUB -A ::default_project::
#-Q- irene ###MSUB -m store,work,scratch
#-Q- irene #MSUB -E '--licenses=fs_unshare,fs_work,fs_store,fs_scratch'
#-Q- irene set +x
#-Q- ada #!/bin/ksh
#-Q- ada #######################
#-Q- ada ## ADA         IDRIS ##
#-Q- ada #######################
#-Q- ada # @ job_type = mpich
#-Q- ada # @ requirements = (Feature == "prepost")
#-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss
#-Q- ada # @ wall_clock_limit = 1:00:00
#-Q- ada # Nom du travail LoadLeveler
#-Q- ada # @ job_name   = ATL_LMDZ
#-Q- ada # Fichier de sortie standard du travail
#-Q- ada # @ output     = $(job_name).$(jobid)
#-Q- ada # Fichier de sortie d'erreur du travail
#-Q- ada # @ error      =  $(job_name).$(jobid)
#-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
#-Q- ada # @ notification = error
#-Q- ada # @ environment  = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit)
#-Q- ada # @ queue
#-Q- lxiv8 ######################
#-Q- lxiv8 ## OBELIX      LSCE ##
#-Q- lxiv8 ######################
#-Q- lxiv8 #PBS -N ATL_LMDZ
#-Q- lxiv8 #PBS -m a
#-Q- lxiv8 #PBS -j oe
#-Q- lxiv8 #PBS -q test
#-Q- lxiv8 #PBS -o ATL_LMDZ.$$
#-Q- lxiv8 #PBS -S /bin/ksh
#-Q- ifort_CICLAD ######################
#-Q- ifort_CICLAD ##   CICLAD    IPSL ##
#-Q- ifort_CICLAD ######################
#-Q- ifort_CICLAD #PBS -N ATL_LMDZ
#-Q- ifort_CICLAD #PBS -m a
#-Q- ifort_CICLAD #PBS -j oe
#-Q- ifort_CICLAD #PBS -q std
#-Q- ifort_CICLAD #PBS -S /bin/ksh
#-Q- default #!/bin/ksh
#-Q- default ##################
#-Q- default ## DEFAULT HOST ##
#-Q- default ##################

#**************************************************************
# Author: Sebastien Denvil
# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
# $Revision::                                          $ Revision of last commit
# $Author::                                            $ Author of last commit
# $Date::                                              $ Date of last commit
# IPSL (2006)
#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
#
#**************************************************************

#set -eu
#set -vx

date

#-Q- ada export OMP_NUM_THREADS=1

#D- Task type DO NOT CHANGE (computing, post-processing or checking)
TaskType=post-processing

######################################################################

. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
#-------
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
#-------
IGCM_sys_MkdirWork ${RUN_DIR_PATH}
IGCM_sys_Cd ${RUN_DIR_PATH}
#-------
( ${DEBUG_debug} ) && IGCM_debug_Check
( ${DEBUG_debug} ) && IGCM_card_Check
( ${DEBUG_debug} ) && IGCM_date_Check

######################################################################

#set -vx

# ------------------------------------------------------------------
# Test if all was right before proceeding further
# ------------------------------------------------------------------
IGCM_debug_Verif_Exit

if [ ${StandAlone} = true ] ; then
    CARD_DIR=${SUBMIT_DIR}
else
    CARD_DIR=${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
fi

#==================================
# First of all
#
# Read libIGCM compatibility version in config.card
# Read UserChoices section
# Read Ensemble section
# Read Post section
# Define all netcdf output directories
#==================================
IGCM_config_CommonConfiguration ${CARD_DIR}/config.card

# ------------------------------------------------------------------
# Activate BigBrother so as to supervise this job
# ------------------------------------------------------------------
IGCM_debug_BigBro_Initialize

#==================================
# Then set up several directories
#==================================
R_ATLAS=ATLAS/SE_${YEARS}
R_OUT_ATM=${R_SAVE}/ATM
DIR_OUT=${DIR_OUT:=SE}
RUN_DIR=${RUN_DIR_PATH}/ATLAS_LMDZ_${YEARS}
IGCM_sys_MkdirArchive ${R_FIGR}
IGCM_sys_MkdirWork ${RUN_DIR}
IGCM_sys_Cd ${RUN_DIR}

# --------------------------------------------
# Insert your commands between III...III lines
# and precise produced directories to save
# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

IGCM_sys_Get ${R_OUT_ATM}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc ${RUN_DIR}

# Only LMDZ4 output have Alt variables
DetectLev=$( ncdump -h ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc | grep "Alt(Alt)" | wc -l )
[ ${DetectLev} = 1 ] && LMDZ=LMDZ4 || LMDZ=LMDZ3.3

# Which atlas configuration source are we using?
ls ${CARD_DIR}/POST/atlas_p_${LMDZ}_diag1_*.cfg 2>/dev/null 1>&2
[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/ATM -l ${PATH_ATLAS}/atlas_p_${LMDZ}_diag1_*.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc

# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# Put ferret journal files together
for file in $( ls ${R_ATLAS}/ATM/*/*jnl ) ; do
    echo -e "\n\n################################" ;
    echo -e "$file\n" ; cat $file ;
done  > ${R_ATLAS}/ATM/allferretscript.txt

# Clear some files
find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;

# Save files
IGCM_sys_Put_Dir ATLAS ${R_FIGR}
IGCM_sys_Rm -Rf ATLAS
IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc

# DODS copy
if [ X${config_Post_DodsCopy} = XTRUE ]  ; then
  IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
  [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
fi
# Clean RUN_DIR_PATH (necessary for cesium and titane only)
IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}

# ------------------------------------------------------------------
# Finalize BigBrother to inform that the jobs end
# ------------------------------------------------------------------
IGCM_debug_BigBro_Finalize