[622] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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[785] | 4 | #-Q- curie #MSUB -r ATL_OPA # Nom du job |
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[622] | 5 | #-Q- curie #MSUB -eo |
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| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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[880] | 7 | #-Q- curie #MSUB -T 7200 # Limite de temps elapsed du job |
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[1154] | 8 | #-Q- curie #MSUB -q ::default_node:: |
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[1274] | 9 | #-Q- curie #MSUB -c ::default_core:: |
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[704] | 10 | #-Q- curie #MSUB -Q normal |
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[837] | 11 | #-Q- curie #MSUB -A ::default_project:: |
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[681] | 12 | #-Q- curie set +x |
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[770] | 13 | #-Q- ada #!/bin/ksh |
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| 14 | #-Q- ada ####################### |
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[929] | 15 | #-Q- ada ## ADA IDRIS ## |
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[770] | 16 | #-Q- ada ####################### |
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[1409] | 17 | #-Q- ada # @ job_type = mpich |
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[848] | 18 | #-Q- ada # @ requirements = (Feature == "prepost") |
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[770] | 19 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 20 | #-Q- ada # @ wall_clock_limit = 2:00:00 |
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| 21 | #-Q- ada # Nom du travail LoadLeveler |
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| 22 | #-Q- ada # @ job_name = ATL_OPA |
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[785] | 23 | #-Q- ada # Fichier de sortie standard du travail |
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[770] | 24 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 25 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 26 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 27 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 28 | #-Q- ada # @ notification = error |
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[1290] | 29 | #-Q- ada # @ environment = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit) |
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[770] | 30 | #-Q- ada # @ queue |
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[929] | 31 | #-Q- lxiv8 ###################### |
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| 32 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 33 | #-Q- lxiv8 ###################### |
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| 34 | #-Q- lxiv8 #PBS -N ATL_OPA |
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| 35 | #-Q- lxiv8 #PBS -m a |
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| 36 | #-Q- lxiv8 #PBS -j oe |
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| 37 | #-Q- lxiv8 #PBS -q test |
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| 38 | #-Q- lxiv8 #PBS -o ATL_OPA.$$ |
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| 39 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[1184] | 40 | #-Q- ifort_CICLAD ###################### |
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| 41 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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| 42 | #-Q- ifort_CICLAD ###################### |
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| 43 | #-Q- ifort_CICLAD #PBS -N ATL_OPA |
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| 44 | #-Q- ifort_CICLAD #PBS -m a |
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| 45 | #-Q- ifort_CICLAD #PBS -j oe |
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| 46 | #-Q- ifort_CICLAD #PBS -q std |
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| 47 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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[2] | 48 | #-Q- default #!/bin/ksh |
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| 49 | #-Q- default ################## |
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| 50 | #-Q- default ## DEFAULT HOST ## |
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| 51 | #-Q- default ################## |
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| 52 | |
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[373] | 53 | #************************************************************** |
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| 54 | # Author: Sebastien Denvil |
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| 55 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 56 | # $Revision:: $ Revision of last commit |
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| 57 | # $Author:: $ Author of last commit |
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| 58 | # $Date:: $ Date of last commit |
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[2] | 59 | # IPSL (2006) |
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| 60 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 61 | # |
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| 62 | #************************************************************** |
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[2] | 63 | |
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[108] | 64 | #set -eu |
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[906] | 65 | #set -vx |
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[2] | 66 | |
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| 67 | date |
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| 68 | |
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[770] | 69 | #-Q- ada export OMP_NUM_THREADS=1 |
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[2] | 70 | |
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[1356] | 71 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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[712] | 72 | TaskType=post-processing |
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| 73 | |
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[2] | 74 | ######################################################################## |
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| 75 | |
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[108] | 76 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 77 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 78 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 79 | #------- |
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| 80 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[731] | 81 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[832] | 82 | #------- |
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[1192] | 83 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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| 84 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 85 | #------- |
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[832] | 86 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 87 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 88 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[2] | 89 | |
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| 90 | ######################################################################## |
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| 91 | |
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[906] | 92 | #set -vx |
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[2] | 93 | |
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[436] | 94 | # ------------------------------------------------------------------ |
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| 95 | # Test if all was right before proceeding further |
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| 96 | # ------------------------------------------------------------------ |
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[1206] | 97 | IGCM_debug_Verif_Exit |
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[436] | 98 | |
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[263] | 99 | if [ ${StandAlone} = true ] ; then |
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| 100 | CARD_DIR=${SUBMIT_DIR} |
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| 101 | else |
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[647] | 102 | CARD_DIR=${RUN_DIR_PATH} |
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[640] | 103 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 104 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 105 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 106 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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| 107 | |
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[263] | 108 | fi |
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[727] | 109 | |
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| 110 | #================================== |
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[263] | 111 | # First of all |
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| 112 | # |
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[727] | 113 | # Read libIGCM compatibility version in config.card |
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| 114 | # Read UserChoices section |
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| 115 | # Read Ensemble section |
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| 116 | # Read Post section |
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| 117 | # Define all netcdf output directories |
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| 118 | #================================== |
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| 119 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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[658] | 120 | |
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[1198] | 121 | # ------------------------------------------------------------------ |
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| 122 | # Activate BigBrother so as to supervise this job |
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| 123 | # ------------------------------------------------------------------ |
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| 124 | IGCM_debug_BigBro_Initialize |
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[263] | 125 | |
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[1198] | 126 | #================================== |
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| 127 | # Then set up several directories |
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| 128 | #================================== |
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[2] | 129 | R_ATLAS=ATLAS/SE_${YEARS} |
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| 130 | R_OUT_OCE=${R_SAVE}/OCE |
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| 131 | R_OUT_ICE=${R_SAVE}/ICE |
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[370] | 132 | DIR_OUT=${DIR_OUT:=SE} |
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[34] | 133 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS} |
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[1198] | 134 | IGCM_sys_MkdirArchive ${R_FIGR} |
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[34] | 135 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 136 | IGCM_sys_Cd ${RUN_DIR} |
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[2] | 137 | |
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| 138 | # -------------------------------------------- |
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| 139 | # Insert your commands between III...III lines |
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| 140 | # and precise produced directories to save |
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| 141 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 142 | |
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[370] | 143 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc ${RUN_DIR} |
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| 144 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc ${RUN_DIR} |
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| 145 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc ${RUN_DIR} |
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| 146 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc ${RUN_DIR} |
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| 147 | IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc ${RUN_DIR} |
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[2] | 148 | |
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| 149 | |
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[1279] | 150 | # Which atlas configuration source are we using? |
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| 151 | ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag1_[abc].cfg 2>/dev/null 1>&2 |
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| 152 | [ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST |
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| 153 | IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc |
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| 154 | |
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| 155 | |
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| 156 | ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_U.cfg 2>/dev/null 1>&2 |
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| 157 | [ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST |
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| 158 | IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc |
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| 159 | |
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| 160 | ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_V.cfg 2>/dev/null 1>&2 |
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| 161 | [ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST |
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| 162 | IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc |
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| 163 | |
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| 164 | ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_W.cfg 2>/dev/null 1>&2 |
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| 165 | [ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST |
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| 166 | #IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc |
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| 167 | |
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| 168 | ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_[defg].cfg 2>/dev/null 1>&2 |
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| 169 | [ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST |
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| 170 | IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc |
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| 171 | |
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| 172 | ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg 2>/dev/null 1>&2 |
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| 173 | [ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST |
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| 174 | IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/ICE -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc |
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| 175 | |
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[2] | 176 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 177 | |
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| 178 | # Put ferret journal files together |
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[785] | 179 | for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do |
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[906] | 180 | echo -e "\n\n################################" ; |
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| 181 | echo -e "$file\n" ; cat $file ; |
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[2] | 182 | done > ${R_ATLAS}/OCE_T/allferretscript.txt |
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| 183 | |
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[906] | 184 | for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do |
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| 185 | echo -e "\n\n################################" ; |
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| 186 | echo -e "$file\n" ; cat $file ; |
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[2] | 187 | done > ${R_ATLAS}/OCE_U/allferretscript.txt |
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| 188 | |
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[906] | 189 | for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do |
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| 190 | echo -e "\n\n################################" ; |
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| 191 | echo -e "$file\n" ; cat $file ; |
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[2] | 192 | done > ${R_ATLAS}/OCE_V/allferretscript.txt |
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| 193 | |
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[906] | 194 | for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do |
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| 195 | echo -e "\n\n################################" ; |
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| 196 | echo -e "$file\n" ; cat $file ; |
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[2] | 197 | done > ${R_ATLAS}/OCE/allferretscript.txt |
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| 198 | |
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[906] | 199 | for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do |
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| 200 | echo -e "\n\n################################" ; |
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| 201 | echo -e "$file\n" ; cat $file ; |
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[2] | 202 | done > ${R_ATLAS}/ICE/allferretscript.txt |
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| 203 | |
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[74] | 204 | # WHILE WAITING FOR A MORE GENERIC SOLUTION |
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[367] | 205 | if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then |
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[785] | 206 | IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ${RUN_DIR} ; |
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| 207 | atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ; |
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| 208 | for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do |
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| 209 | echo -e "\n\n################################" ; |
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| 210 | echo -e "$file\n" ; cat $file ; |
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| 211 | done > ${R_ATLAS}/ZNL/allferretscript.txt |
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[74] | 212 | fi |
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| 213 | |
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[2] | 214 | # Clear some files |
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| 215 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
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| 216 | |
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| 217 | # Save files |
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[587] | 218 | IGCM_sys_Put_Dir ATLAS ${R_FIGR} |
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[2] | 219 | IGCM_sys_Rm -Rf ATLAS |
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[906] | 220 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc |
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[785] | 221 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc |
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[74] | 222 | # WHILE WAITING FOR A MORE GENERIC SOLUTION |
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[367] | 223 | if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then |
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[906] | 224 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ; |
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[74] | 225 | fi |
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[2] | 226 | |
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| 227 | # DODS copy |
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[903] | 228 | if [ X${config_Post_DodsCopy} = XTRUE ] ; then |
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| 229 | IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS} |
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| 230 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
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| 231 | fi |
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[203] | 232 | |
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[590] | 233 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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[203] | 234 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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[1198] | 235 | |
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| 236 | # ------------------------------------------------------------------ |
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| 237 | # Finalize BigBrother to inform that the jobs end |
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| 238 | # ------------------------------------------------------------------ |
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| 239 | IGCM_debug_BigBro_Finalize |
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