source: trunk/libIGCM/AA_atlas_ORCA_LIM @ 763

Last change on this file since 763 was 758, checked in by mafoipsl, 11 years ago

On curie, delete #MSUB -E '--no-requeue' option. The system will requeue jobs automatically.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.3 KB
RevLine 
[314]1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_OPA        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
[622]11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
[626]14#-Q- curie #MSUB -r ATL_OPA        # Nom du job               
[622]15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
[741]18#-Q- curie #MSUB -q xlarge
[704]19#-Q- curie #MSUB -Q normal
[681]20#-Q- curie set +x
[2]21#-Q- platine #!/usr/bin/ksh
22#-Q- platine ##################
23#-Q- platine ## PLATINE   CEA ##
24#-Q- platine ##################
25#-Q- platine #BSUB -J ATL_OPA           # Nom du job
26#-Q- platine #BSUB -N                   # message a la fin du job
27#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
28#-Q- platine #BSUB -W 1:00              # Limite temps
[18]29#-Q- platine #BSUB -q post              # Passage en queue post
[426]30#-Q- platine #BSUB -L /bin/ksh
[59]31#-Q- sx8brodie #!/bin/ksh
[2]32#-Q- sx8brodie #######################
33#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
34#-Q- sx8brodie #######################
[58]35#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
[518]36#-Q- sx8brodie # @ wall_clock_limit = 2:00:00
[58]37#-Q- sx8brodie # Nom du travail LoadLeveler
[60]38#-Q- sx8brodie # @ job_name   = ATL_OPA
[58]39#-Q- sx8brodie # Fichier de sortie standard du travail       
40#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
41#-Q- sx8brodie # Fichier de sortie d'erreur du travail
42#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
43#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
44#-Q- sx8brodie # @ notification = error
[370]45#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
[58]46#-Q- sx8brodie # @ queue
[68]47#-Q- aix6 #!/bin/ksh
48#-Q- aix6 #######################
49#-Q- aix6 ##   VARGAS   IDRIS  ##
50#-Q- aix6 #######################
51#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
[518]52#-Q- aix6 # @ wall_clock_limit = 2:00:00
[68]53#-Q- aix6 # Nom du travail LoadLeveler
54#-Q- aix6 # @ job_name   = ATL_OPA
55#-Q- aix6 # Fichier de sortie standard du travail       
56#-Q- aix6 # @ output     = $(job_name).$(jobid)
57#-Q- aix6 # Fichier de sortie d'erreur du travail
58#-Q- aix6 # @ error      =  $(job_name).$(jobid)
59#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
60#-Q- aix6 # @ notification = error
[370]61#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
[68]62#-Q- aix6 # @ queue
[386]63#-Q- ulam #!/bin/ksh
64#-Q- ulam #######################
65#-Q- ulam ##   ULAM   IDRIS  ##
66#-Q- ulam #######################
67#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
[518]68#-Q- ulam # @ wall_clock_limit = 2:00:00
[386]69#-Q- ulam # Nom du travail LoadLeveler
70#-Q- ulam # @ job_name   = ATL_OPA
71#-Q- ulam # Fichier de sortie standard du travail       
72#-Q- ulam # @ output     = $(job_name).$(jobid)
73#-Q- ulam # Fichier de sortie d'erreur du travail
74#-Q- ulam # @ error      =  $(job_name).$(jobid)
75#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
76#-Q- ulam # @ notification = error
77#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
78#-Q- ulam # @ queue
[2]79#-Q- sx8mercure #!/bin/ksh
80#-Q- sx8mercure ######################
81#-Q- sx8mercure ## SX8MERCURE   CEA ##
82#-Q- sx8mercure ######################
83#-Q- sx8mercure #PBS -N  ATL_OPA             # Nom du job
84#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
85#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
86#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
87#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
[299]88#-Q- sx8mercure #PBS -q scalaire
[640]89#-Q- sx8mercure #PBS -r n
[172]90#-Q- sx9mercure #!/bin/ksh
[616]91#-Q- sx9mercure ######################
92#-Q- sx9mercure ## SX9MERCURE  CCRT ##
93#-Q- sx9mercure ######################
94#-Q- sx9mercure #PBS -N  ATL_OPA             # Nom du job
95#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
96#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
97#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
98#-Q- sx9mercure #PBS -l elapstim_req=2:00:00   # Limite temps a 2 heures
99#-Q- sx9mercure #PBS -q scalaire
[640]100#-Q- sx9mercure #PBS -r n
[222]101#-Q- titane #!/bin/ksh
102#-Q- titane ######################
103#-Q- titane ## TITANE   CEA ##
104#-Q- titane ######################
105#-Q- titane #MSUB -r ATL_OPA        # Nom du job               
[544]106#-Q- titane #MSUB -eo
[222]107#-Q- titane #MSUB -n 1              # Reservation du processus
108#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
[544]109#-Q- titane #MSUB -q mono
[643]110#-Q- titane #MSUB -E '-rn'
[2]111#-Q- default #!/bin/ksh
112#-Q- default ##################
113#-Q- default ## DEFAULT HOST ##
114#-Q- default ##################
115
[373]116#**************************************************************
117# Author: Sebastien Denvil
118# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
119# $Revision::                                          $ Revision of last commit
120# $Author::                                            $ Author of last commit
121# $Date::                                              $ Date of last commit
[2]122# IPSL (2006)
123#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
[373]124#
125#**************************************************************
[2]126
[108]127#set -eu
[2]128#set -vx
129
130date
131
132#-Q- sx8brodie export OMP_NUM_THREADS=1
[108]133#-Q- aix6 export OMP_NUM_THREADS=1
[386]134#-Q- ulam export OMP_NUM_THREADS=1
[2]135
[712]136#D- Task type (computing or post-processing)
137TaskType=post-processing
138
[2]139########################################################################
140
[108]141. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
142      ( ${DEBUG_debug} ) && IGCM_debug_Check
143. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
144     ( ${DEBUG_debug} ) && IGCM_card_Check
145. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
146     ( ${DEBUG_debug} ) && IGCM_date_Check
147#-------
148. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
[731]149. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
[2]150
151########################################################################
152
153#set -vx
154
[263]155IGCM_sys_MkdirWork ${RUN_DIR_PATH}
156IGCM_sys_Cd ${RUN_DIR_PATH}
157
[436]158# ------------------------------------------------------------------
159# Test if all was right before proceeding further
160# ------------------------------------------------------------------
161IGCM_debug_Verif_Exit_Post
162
[263]163if [ ${StandAlone} = true ] ; then
164    CARD_DIR=${SUBMIT_DIR}
165else
[647]166    CARD_DIR=${RUN_DIR_PATH}
[640]167    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
168    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
169    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
170    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
171
[263]172fi
[727]173
174#==================================
[263]175# First of all
176#
[727]177# Read libIGCM compatibility version in config.card
178# Read UserChoices section
179# Read Ensemble section
180# Read Post section
181# Define all netcdf output directories
182#==================================
183IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
[658]184
[263]185#
[591]186IGCM_sys_MkdirArchive ${R_FIGR}
[263]187
[2]188R_ATLAS=ATLAS/SE_${YEARS}
189R_OUT_OCE=${R_SAVE}/OCE
190R_OUT_ICE=${R_SAVE}/ICE
[370]191DIR_OUT=${DIR_OUT:=SE}
[2]192
[34]193RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
194IGCM_sys_MkdirWork ${RUN_DIR}
195IGCM_sys_Cd ${RUN_DIR}
[2]196
197# --------------------------------------------
198# Insert your commands between III...III lines
199# and precise produced directories to save
200# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
201
[370]202IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
203IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
204IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
205IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
206IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
[2]207
[470]208atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
[34]209atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
210atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
211#atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
[470]212atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
[34]213atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
[2]214
215# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
216
217# Put ferret journal files together
218for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do 
219    echo -e "\n\n################################" ;
220    echo -e "$file\n" ; cat $file ;
221done  > ${R_ATLAS}/OCE_T/allferretscript.txt
222
223for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do 
224    echo -e "\n\n################################" ;
225    echo -e "$file\n" ; cat $file ;
226done  > ${R_ATLAS}/OCE_U/allferretscript.txt
227
228for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do 
229    echo -e "\n\n################################" ;
230    echo -e "$file\n" ; cat $file ;
231done  > ${R_ATLAS}/OCE_V/allferretscript.txt
232
233for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do 
234    echo -e "\n\n################################" ;
235    echo -e "$file\n" ; cat $file ;
236done  > ${R_ATLAS}/OCE/allferretscript.txt
237
238for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do 
239    echo -e "\n\n################################" ;
240    echo -e "$file\n" ; cat $file ;
241done  > ${R_ATLAS}/ICE/allferretscript.txt
242
[74]243# WHILE WAITING FOR A MORE GENERIC SOLUTION
[367]244if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
[370]245    IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
[74]246    atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
247    for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
248        echo -e "\n\n################################" ;
249        echo -e "$file\n" ; cat $file ;
[165]250    done > ${R_ATLAS}/ZNL/allferretscript.txt
[74]251fi
252
[2]253# Clear some files
254find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
255
256# Save files
[587]257IGCM_sys_Put_Dir ATLAS ${R_FIGR}
[2]258
259IGCM_sys_Rm -Rf ATLAS
260IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
261IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc     
[74]262# WHILE WAITING FOR A MORE GENERIC SOLUTION
[367]263if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
[74]264    IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
265fi
[2]266
267# DODS copy
[587]268IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
[67]269[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
[203]270
[590]271# Clean RUN_DIR_PATH (necessary for cesium and titane only)
[203]272IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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