source: trunk/libIGCM/AA_atlas_ORCA_LIM @ 1451

Last change on this file since 1451 was 1448, checked in by jgipsl, 6 years ago

Change in headers at irene : temporary remove option -m and use a workaround given by the TGCC. This change is done to avoid problems with resubmitting from job when submitting the main job from workdir.

  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 10.7 KB
Line 
1#-Q- curie ######################
2#-Q- curie ## CURIE   TGCC/CEA ##
3#-Q- curie ######################
4#-Q- curie #MSUB -r ATL_OPA        # Nom du job
5#-Q- curie #MSUB -eo
6#-Q- curie #MSUB -n 1              # Reservation du processus
7#-Q- curie #MSUB -T 7200          # Limite de temps elapsed du job
8#-Q- curie #MSUB -q ::default_node::
9#-Q- curie #MSUB -c ::default_core::
10#-Q- curie #MSUB -Q normal
11#-Q- curie #MSUB -A ::default_project::
12#-Q- curie set +x
13#-Q- irene ######################
14#-Q- irene ## IRENE   TGCC/CEA ##
15#-Q- irene ######################
16#-Q- irene #MSUB -r ATL_OPA      # Job name
17#-Q- irene #MSUB -eo
18#-Q- irene #MSUB -n 1
19#-Q- irene #MSUB -T 7200         # Maximum elapsed time
20#-Q- irene #MSUB -q skylake
21#-Q- irene #MSUB -c 4
22#-Q- irene #MSUB -Q normal
23#-Q- irene #MSUB -A ::default_project::
24#-Q- irene ###MSUB -m store,work,scratch
25#-Q- irene #MSUB -E '--licenses=fs_unshare,fs_work,fs_store,fs_scratch'
26#-Q- irene set +x
27#-Q- ada #!/bin/ksh
28#-Q- ada #######################
29#-Q- ada ## ADA         IDRIS ##
30#-Q- ada #######################
31#-Q- ada # @ job_type = mpich
32#-Q- ada # @ requirements = (Feature == "prepost")
33#-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss
34#-Q- ada # @ wall_clock_limit = 2:00:00
35#-Q- ada # Nom du travail LoadLeveler
36#-Q- ada # @ job_name   = ATL_OPA
37#-Q- ada # Fichier de sortie standard du travail
38#-Q- ada # @ output     = $(job_name).$(jobid)
39#-Q- ada # Fichier de sortie d'erreur du travail
40#-Q- ada # @ error      =  $(job_name).$(jobid)
41#-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
42#-Q- ada # @ notification = error
43#-Q- ada # @ environment  = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit)
44#-Q- ada # @ queue
45#-Q- lxiv8 ######################
46#-Q- lxiv8 ## OBELIX      LSCE ##
47#-Q- lxiv8 ######################
48#-Q- lxiv8 #PBS -N ATL_OPA
49#-Q- lxiv8 #PBS -m a
50#-Q- lxiv8 #PBS -j oe
51#-Q- lxiv8 #PBS -q test
52#-Q- lxiv8 #PBS -o ATL_OPA.$$
53#-Q- lxiv8 #PBS -S /bin/ksh
54#-Q- ifort_CICLAD ######################
55#-Q- ifort_CICLAD ##   CICLAD    IPSL ##
56#-Q- ifort_CICLAD ######################
57#-Q- ifort_CICLAD #PBS -N ATL_OPA
58#-Q- ifort_CICLAD #PBS -m a
59#-Q- ifort_CICLAD #PBS -j oe
60#-Q- ifort_CICLAD #PBS -q std
61#-Q- ifort_CICLAD #PBS -S /bin/ksh
62#-Q- default #!/bin/ksh
63#-Q- default ##################
64#-Q- default ## DEFAULT HOST ##
65#-Q- default ##################
66
67#**************************************************************
68# Author: Sebastien Denvil
69# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
70# $Revision::                                          $ Revision of last commit
71# $Author::                                            $ Author of last commit
72# $Date::                                              $ Date of last commit
73# IPSL (2006)
74#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
75#
76#**************************************************************
77
78#set -eu
79#set -vx
80
81date
82
83#-Q- ada export OMP_NUM_THREADS=1
84
85#D- Task type DO NOT CHANGE (computing, post-processing or checking)
86TaskType=post-processing
87
88########################################################################
89
90. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
91. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
92. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
93#-------
94. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
95. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
96#-------
97IGCM_sys_MkdirWork ${RUN_DIR_PATH}
98IGCM_sys_Cd ${RUN_DIR_PATH}
99#-------
100( ${DEBUG_debug} ) && IGCM_debug_Check
101( ${DEBUG_debug} ) && IGCM_card_Check
102( ${DEBUG_debug} ) && IGCM_date_Check
103
104########################################################################
105
106#set -vx
107
108# ------------------------------------------------------------------
109# Test if all was right before proceeding further
110# ------------------------------------------------------------------
111IGCM_debug_Verif_Exit
112
113if [ ${StandAlone} = true ] ; then
114    CARD_DIR=${SUBMIT_DIR}
115else
116    CARD_DIR=${RUN_DIR_PATH}
117    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
118    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
119    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
120    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
121
122fi
123
124#==================================
125# First of all
126#
127# Read libIGCM compatibility version in config.card
128# Read UserChoices section
129# Read Ensemble section
130# Read Post section
131# Define all netcdf output directories
132#==================================
133IGCM_config_CommonConfiguration ${CARD_DIR}/config.card
134
135# ------------------------------------------------------------------
136# Activate BigBrother so as to supervise this job
137# ------------------------------------------------------------------
138IGCM_debug_BigBro_Initialize
139
140#==================================
141# Then set up several directories
142#==================================
143R_ATLAS=ATLAS/SE_${YEARS}
144R_OUT_OCE=${R_SAVE}/OCE
145R_OUT_ICE=${R_SAVE}/ICE
146DIR_OUT=${DIR_OUT:=SE}
147RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
148IGCM_sys_MkdirArchive ${R_FIGR}
149IGCM_sys_MkdirWork ${RUN_DIR}
150IGCM_sys_Cd ${RUN_DIR}
151
152# --------------------------------------------
153# Insert your commands between III...III lines
154# and precise produced directories to save
155# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
156
157IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
158IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
159IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
160IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
161IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
162
163
164# Which atlas configuration source are we using?
165ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag1_[abc].cfg 2>/dev/null 1>&2
166[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
167IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
168
169
170ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_U.cfg 2>/dev/null 1>&2
171[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
172IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
173
174ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_V.cfg 2>/dev/null 1>&2
175[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
176IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
177
178ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_W.cfg 2>/dev/null 1>&2
179[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
180#IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
181
182ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}_diag0_[defg].cfg 2>/dev/null 1>&2
183[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
184IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
185
186ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg 2>/dev/null 1>&2
187[ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST
188IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
189
190# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
191
192# Put ferret journal files together
193for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do
194  echo -e "\n\n################################" ;
195  echo -e "$file\n" ; cat $file ;
196done  > ${R_ATLAS}/OCE_T/allferretscript.txt
197
198for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do
199  echo -e "\n\n################################" ;
200  echo -e "$file\n" ; cat $file ;
201done  > ${R_ATLAS}/OCE_U/allferretscript.txt
202
203for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do
204  echo -e "\n\n################################" ;
205  echo -e "$file\n" ; cat $file ;
206done  > ${R_ATLAS}/OCE_V/allferretscript.txt
207
208for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do
209  echo -e "\n\n################################" ;
210  echo -e "$file\n" ; cat $file ;
211done  > ${R_ATLAS}/OCE/allferretscript.txt
212
213for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do
214  echo -e "\n\n################################" ;
215  echo -e "$file\n" ; cat $file ;
216done  > ${R_ATLAS}/ICE/allferretscript.txt
217
218# WHILE WAITING FOR A MORE GENERIC SOLUTION
219if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
220  IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
221  atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
222  for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
223    echo -e "\n\n################################" ;
224    echo -e "$file\n" ; cat $file ;
225  done > ${R_ATLAS}/ZNL/allferretscript.txt
226fi
227
228# Clear some files
229find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
230
231# Save files
232IGCM_sys_Put_Dir ATLAS ${R_FIGR}
233IGCM_sys_Rm -Rf ATLAS
234IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
235IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
236# WHILE WAITING FOR A MORE GENERIC SOLUTION
237if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
238  IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
239fi
240
241# DODS copy
242if [ X${config_Post_DodsCopy} = XTRUE ]  ; then
243  IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
244  [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
245fi
246
247# Clean RUN_DIR_PATH (necessary for cesium and titane only)
248IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
249
250# ------------------------------------------------------------------
251# Finalize BigBrother to inform that the jobs end
252# ------------------------------------------------------------------
253IGCM_debug_BigBro_Finalize
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