source: trunk/libIGCM/AA_atlas_ORCA_LIM @ 386

Last change on this file since 386 was 386, checked in by mafoipsl, 13 years ago

Add ulam header to facilitate post-processing on ulam directly.
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.6 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_OPA        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ##################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ##################
15#-Q- platine #BSUB -J ATL_OPA           # Nom du job
16#-Q- platine #BSUB -N                   # message a la fin du job
17#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 1:00              # Limite temps
19#-Q- platine #BSUB -q post              # Passage en queue post
20#-Q- sx8brodie #!/bin/ksh
21#-Q- sx8brodie #######################
22#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
23#-Q- sx8brodie #######################
24#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
25#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
26#-Q- sx8brodie # Nom du travail LoadLeveler
27#-Q- sx8brodie # @ job_name   = ATL_OPA
28#-Q- sx8brodie # Fichier de sortie standard du travail       
29#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
30#-Q- sx8brodie # Fichier de sortie d'erreur du travail
31#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
32#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
33#-Q- sx8brodie # @ notification = error
34#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
35#-Q- sx8brodie # @ queue
36#-Q- aix6 #!/bin/ksh
37#-Q- aix6 #######################
38#-Q- aix6 ##   VARGAS   IDRIS  ##
39#-Q- aix6 #######################
40#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
41#-Q- aix6 # @ wall_clock_limit = 10:00:00
42#-Q- aix6 # Nom du travail LoadLeveler
43#-Q- aix6 # @ job_name   = ATL_OPA
44#-Q- aix6 # Fichier de sortie standard du travail       
45#-Q- aix6 # @ output     = $(job_name).$(jobid)
46#-Q- aix6 # Fichier de sortie d'erreur du travail
47#-Q- aix6 # @ error      =  $(job_name).$(jobid)
48#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
49#-Q- aix6 # @ notification = error
50#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
51#-Q- aix6 # @ queue
52#-Q- ulam #!/bin/ksh
53#-Q- ulam #######################
54#-Q- ulam ##   ULAM   IDRIS  ##
55#-Q- ulam #######################
56#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
57#-Q- ulam # @ wall_clock_limit = 10:00:00
58#-Q- ulam # Nom du travail LoadLeveler
59#-Q- ulam # @ job_name   = ATL_OPA
60#-Q- ulam # Fichier de sortie standard du travail       
61#-Q- ulam # @ output     = $(job_name).$(jobid)
62#-Q- ulam # Fichier de sortie d'erreur du travail
63#-Q- ulam # @ error      =  $(job_name).$(jobid)
64#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
65#-Q- ulam # @ notification = error
66#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
67#-Q- ulam # @ queue
68#-Q- sx8mercure #!/bin/ksh
69#-Q- sx8mercure ######################
70#-Q- sx8mercure ## SX8MERCURE   CEA ##
71#-Q- sx8mercure ######################
72#-Q- sx8mercure #PBS -N  ATL_OPA             # Nom du job
73#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
74#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
75#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
76#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
77#-Q- sx8mercure #PBS -q scalaire
78#-Q- sx9mercure #!/bin/ksh
79#-Q- sx9mercure #########################
80#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
81#-Q- sx9mercure #########################
82#-Q- sx9mercure #MSUB -r ATL_OPA        # Nom du job               
83#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
84#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
85#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
86#-Q- sx9mercure #MSUB -E "-j o"
87#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
88#-Q- titane #!/bin/ksh
89#-Q- titane ######################
90#-Q- titane ## TITANE   CEA ##
91#-Q- titane ######################
92#-Q- titane #MSUB -r ATL_OPA        # Nom du job               
93#-Q- titane #MSUB -N 1              # Reservation du noeud
94#-Q- titane #MSUB -n 1              # Reservation du processus
95#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
96#-Q- titane #MSUB -E "-j o"
97#-Q- titane #MSUB -E "-S /bin/ksh"
98#-Q- titane ##MSUB -e nco.out        # Sortie standard
99#-Q- titane ##MSUB -o nco.out        # Sortie standard
100#-Q- default #!/bin/ksh
101#-Q- default ##################
102#-Q- default ## DEFAULT HOST ##
103#-Q- default ##################
104
105#**************************************************************
106# Author: Sebastien Denvil
107# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
108# $Revision::                                          $ Revision of last commit
109# $Author::                                            $ Author of last commit
110# $Date::                                              $ Date of last commit
111# IPSL (2006)
112#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
113#
114#**************************************************************
115
116#set -eu
117#set -vx
118
119date
120
121#-Q- sx8brodie export OMP_NUM_THREADS=1
122#-Q- aix6 export OMP_NUM_THREADS=1
123#-Q- ulam export OMP_NUM_THREADS=1
124
125########################################################################
126
127. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
128      ( ${DEBUG_debug} ) && IGCM_debug_Check
129. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
130     ( ${DEBUG_debug} ) && IGCM_card_Check
131. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
132     ( ${DEBUG_debug} ) && IGCM_date_Check
133#-------
134. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
135
136########################################################################
137
138#set -vx
139
140IGCM_sys_MkdirWork ${RUN_DIR_PATH}
141IGCM_sys_Cd ${RUN_DIR_PATH}
142
143if [ ${StandAlone} = true ] ; then
144    CARD_DIR=${SUBMIT_DIR}
145else
146    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
147    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
148fi
149#
150# First of all
151#
152IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
153typeset option
154for option in ${config_UserChoices[*]} ; do
155    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
156done
157#
158echo
159IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
160IGCM_debug_PrintVariables 3 config_UserChoices_JobName
161IGCM_debug_PrintVariables 3 config_UserChoices_LongName
162IGCM_debug_PrintVariables 3 config_UserChoices_TagName
163IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
164IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
165IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
166IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
167IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
168IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
169echo
170
171#==================================
172#R_SAVE : Job output directory
173if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
174    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
175    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
176    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
177else
178    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
179    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
180fi
181#
182
183R_ATLAS=ATLAS/SE_${YEARS}
184R_OUT_OCE=${R_SAVE}/OCE
185R_OUT_ICE=${R_SAVE}/ICE
186DIR_OUT=${DIR_OUT:=SE}
187
188RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
189IGCM_sys_MkdirWork ${RUN_DIR}
190IGCM_sys_Cd ${RUN_DIR}
191
192# --------------------------------------------
193# Insert your commands between III...III lines
194# and precise produced directories to save
195# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
196
197IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
198IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
199IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
200IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
201IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
202
203atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[ab].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
204atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
205atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
206#atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
207atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[def].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
208atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
209
210# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
211
212# Put ferret journal files together
213for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do 
214    echo -e "\n\n################################" ;
215    echo -e "$file\n" ; cat $file ;
216done  > ${R_ATLAS}/OCE_T/allferretscript.txt
217
218for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do 
219    echo -e "\n\n################################" ;
220    echo -e "$file\n" ; cat $file ;
221done  > ${R_ATLAS}/OCE_U/allferretscript.txt
222
223for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do 
224    echo -e "\n\n################################" ;
225    echo -e "$file\n" ; cat $file ;
226done  > ${R_ATLAS}/OCE_V/allferretscript.txt
227
228for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do 
229    echo -e "\n\n################################" ;
230    echo -e "$file\n" ; cat $file ;
231done  > ${R_ATLAS}/OCE/allferretscript.txt
232
233for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do 
234    echo -e "\n\n################################" ;
235    echo -e "$file\n" ; cat $file ;
236done  > ${R_ATLAS}/ICE/allferretscript.txt
237
238# WHILE WAITING FOR A MORE GENERIC SOLUTION
239if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
240    IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
241    atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
242    for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
243        echo -e "\n\n################################" ;
244        echo -e "$file\n" ; cat $file ;
245    done > ${R_ATLAS}/ZNL/allferretscript.txt
246fi
247
248# Clear some files
249find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
250
251# Save files
252IGCM_sys_Put_Dir ATLAS ${R_SAVE}
253
254IGCM_sys_Rm -Rf ATLAS
255IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
256IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc     
257# WHILE WAITING FOR A MORE GENERIC SOLUTION
258if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
259    IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
260fi
261
262# DODS copy
263IGCM_sys_TestDirArchive ${R_SAVE}/${R_ATLAS}
264[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
265
266# Clean RUN_DIR_PATH (necessary for cesium)
267IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
Note: See TracBrowser for help on using the repository browser.