source: trunk/libIGCM/AA_atlas_ORCA_LIM @ 553

Last change on this file since 553 was 546, checked in by sdipsl, 12 years ago

R_BUFR defined in post-processing job
  • Property licence set to
    The following licence information concerns ONLY the libIGCM tools
    ==================================================================

    Copyright © Centre National de la Recherche Scientifique CNRS
    Commissariat à l'Énergie Atomique CEA

    libIGCM : Library for Portable Models Computation of IGCM Group.

    IGCM Group is the french IPSL Global Climate Model Group.

    This library is a set of shell scripts and functions whose purpose is
    the management of the initialization, the launch, the transfer of
    output files, the post-processing and the monitoring of datas produce
    by any numerical program on any plateforme.

    This software is governed by the CeCILL license under French law and
    abiding by the rules of distribution of free software. You can use,
    modify and/ or redistribute the software under the terms of the CeCILL
    license as circulated by CEA, CNRS and INRIA at the following URL
    "http://www.cecill.info".

    As a counterpart to the access to the source code and rights to copy,
    modify and redistribute granted by the license, users are provided only
    with a limited warranty and the software's author, the holder of the
    economic rights, and the successive licensors have only limited
    liability.

    In this respect, the user's attention is drawn to the risks associated
    with loading, using, modifying and/or developing or reproducing the
    software by the user in light of its specific status of free software,
    that may mean that it is complicated to manipulate, and that also
    therefore means that it is reserved for developers and experienced
    professionals having in-depth computer knowledge. Users are therefore
    encouraged to load and test the software's suitability as regards their
    requirements in conditions enabling the security of their systems and/or
    data to be ensured and, more generally, to use and operate it in the
    same conditions as regards security.

    The fact that you are presently reading this means that you have had
    knowledge of the CeCILL license and that you accept its terms.
  • Property svn:keywords set to Revision Author Date
File size: 12.9 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_OPA        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ##################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ##################
15#-Q- platine #BSUB -J ATL_OPA           # Nom du job
16#-Q- platine #BSUB -N                   # message a la fin du job
17#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 1:00              # Limite temps
19#-Q- platine #BSUB -q post              # Passage en queue post
20#-Q- platine #BSUB -L /bin/ksh
21#-Q- sx8brodie #!/bin/ksh
22#-Q- sx8brodie #######################
23#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
24#-Q- sx8brodie #######################
25#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
26#-Q- sx8brodie # @ wall_clock_limit = 2:00:00
27#-Q- sx8brodie # Nom du travail LoadLeveler
28#-Q- sx8brodie # @ job_name   = ATL_OPA
29#-Q- sx8brodie # Fichier de sortie standard du travail       
30#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
31#-Q- sx8brodie # Fichier de sortie d'erreur du travail
32#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
33#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
34#-Q- sx8brodie # @ notification = error
35#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
36#-Q- sx8brodie # @ queue
37#-Q- aix6 #!/bin/ksh
38#-Q- aix6 #######################
39#-Q- aix6 ##   VARGAS   IDRIS  ##
40#-Q- aix6 #######################
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 2:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = ATL_OPA
45#-Q- aix6 # Fichier de sortie standard du travail       
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
52#-Q- aix6 # @ queue
53#-Q- ulam #!/bin/ksh
54#-Q- ulam #######################
55#-Q- ulam ##   ULAM   IDRIS  ##
56#-Q- ulam #######################
57#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
58#-Q- ulam # @ wall_clock_limit = 2:00:00
59#-Q- ulam # Nom du travail LoadLeveler
60#-Q- ulam # @ job_name   = ATL_OPA
61#-Q- ulam # Fichier de sortie standard du travail       
62#-Q- ulam # @ output     = $(job_name).$(jobid)
63#-Q- ulam # Fichier de sortie d'erreur du travail
64#-Q- ulam # @ error      =  $(job_name).$(jobid)
65#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
66#-Q- ulam # @ notification = error
67#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
68#-Q- ulam # @ queue
69#-Q- sx8mercure #!/bin/ksh
70#-Q- sx8mercure ######################
71#-Q- sx8mercure ## SX8MERCURE   CEA ##
72#-Q- sx8mercure ######################
73#-Q- sx8mercure #PBS -N  ATL_OPA             # Nom du job
74#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
75#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
76#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
77#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
78#-Q- sx8mercure #PBS -q scalaire
79#-Q- sx9mercure #!/bin/ksh
80#-Q- sx9mercure #########################
81#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
82#-Q- sx9mercure #########################
83#-Q- sx9mercure #MSUB -r ATL_OPA        # Nom du job               
84#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
85#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
86#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
87#-Q- sx9mercure #MSUB -E "-j o"
88#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
89#-Q- titane #!/bin/ksh
90#-Q- titane ######################
91#-Q- titane ## TITANE   CEA ##
92#-Q- titane ######################
93#-Q- titane #MSUB -r ATL_OPA        # Nom du job               
94#-Q- titane #MSUB -eo
95#-Q- titane #MSUB -n 1              # Reservation du processus
96#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
97#-Q- titane #MSUB -q mono
98#-Q- default #!/bin/ksh
99#-Q- default ##################
100#-Q- default ## DEFAULT HOST ##
101#-Q- default ##################
102
103#**************************************************************
104# Author: Sebastien Denvil
105# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
106# $Revision::                                          $ Revision of last commit
107# $Author::                                            $ Author of last commit
108# $Date::                                              $ Date of last commit
109# IPSL (2006)
110#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
111#
112#**************************************************************
113
114#set -eu
115#set -vx
116
117date
118
119#-Q- sx8brodie export OMP_NUM_THREADS=1
120#-Q- aix6 export OMP_NUM_THREADS=1
121#-Q- ulam export OMP_NUM_THREADS=1
122
123########################################################################
124
125. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
126      ( ${DEBUG_debug} ) && IGCM_debug_Check
127. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
128     ( ${DEBUG_debug} ) && IGCM_card_Check
129. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
130     ( ${DEBUG_debug} ) && IGCM_date_Check
131#-------
132. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
133
134########################################################################
135
136#set -vx
137
138IGCM_sys_MkdirWork ${RUN_DIR_PATH}
139IGCM_sys_Cd ${RUN_DIR_PATH}
140
141# ------------------------------------------------------------------
142# Test if all was right before proceeding further
143# ------------------------------------------------------------------
144IGCM_debug_Verif_Exit_Post
145
146if [ ${StandAlone} = true ] ; then
147    CARD_DIR=${SUBMIT_DIR}
148else
149    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
150    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
151fi
152#
153# First of all
154#
155IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
156typeset option
157for option in ${config_UserChoices[*]} ; do
158    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
159done
160#
161echo
162IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
163IGCM_debug_PrintVariables 3 config_UserChoices_JobName
164IGCM_debug_PrintVariables 3 config_UserChoices_LongName
165IGCM_debug_PrintVariables 3 config_UserChoices_TagName
166IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
167IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
168IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
169IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
170IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
171IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
172echo
173
174#==================================
175#R_SAVE : Job output directory
176#R_BUFR : Job output buffered directory
177if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
178    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
179    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
180    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
181    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
182else
183    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
184    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
185    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
186fi
187#
188
189R_ATLAS=ATLAS/SE_${YEARS}
190R_OUT_OCE=${R_SAVE}/OCE
191R_OUT_ICE=${R_SAVE}/ICE
192DIR_OUT=${DIR_OUT:=SE}
193
194RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS}
195IGCM_sys_MkdirWork ${RUN_DIR}
196IGCM_sys_Cd ${RUN_DIR}
197
198# --------------------------------------------
199# Insert your commands between III...III lines
200# and precise produced directories to save
201# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
202
203IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR}
204IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR}
205IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR}
206IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR}
207IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR}
208
209atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[abc].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
210atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_U -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_U.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc
211atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_V -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_V.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc
212#atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_W -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_W.cfg        ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc
213atlas -o ${RUN_DIR}/${R_ATLAS}/OCE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag0_[defg].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc
214atlas -o ${RUN_DIR}/${R_ATLAS}/ICE   -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}LIM_diag0_[abc].cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc
215
216# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
217
218# Put ferret journal files together
219for file in $( ls ${R_ATLAS}/OCE_T/*/*jnl ) ; do 
220    echo -e "\n\n################################" ;
221    echo -e "$file\n" ; cat $file ;
222done  > ${R_ATLAS}/OCE_T/allferretscript.txt
223
224for file in $( ls ${R_ATLAS}/OCE_U/*/*jnl ) ; do 
225    echo -e "\n\n################################" ;
226    echo -e "$file\n" ; cat $file ;
227done  > ${R_ATLAS}/OCE_U/allferretscript.txt
228
229for file in $( ls ${R_ATLAS}/OCE_V/*/*jnl ) ; do 
230    echo -e "\n\n################################" ;
231    echo -e "$file\n" ; cat $file ;
232done  > ${R_ATLAS}/OCE_V/allferretscript.txt
233
234for file in $( ls ${R_ATLAS}/OCE/*/*jnl ) ; do 
235    echo -e "\n\n################################" ;
236    echo -e "$file\n" ; cat $file ;
237done  > ${R_ATLAS}/OCE/allferretscript.txt
238
239for file in $( ls ${R_ATLAS}/ICE/*/*jnl ) ; do 
240    echo -e "\n\n################################" ;
241    echo -e "$file\n" ; cat $file ;
242done  > ${R_ATLAS}/ICE/allferretscript.txt
243
244# WHILE WAITING FOR A MORE GENERIC SOLUTION
245if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
246    IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ;
247    atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
248    for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do
249        echo -e "\n\n################################" ;
250        echo -e "$file\n" ; cat $file ;
251    done > ${R_ATLAS}/ZNL/allferretscript.txt
252fi
253
254# Clear some files
255find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
256
257# Save files
258IGCM_sys_Put_Dir ATLAS ${R_SAVE}
259
260IGCM_sys_Rm -Rf ATLAS
261IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_[TUVW].nc
262IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc     
263# WHILE WAITING FOR A MORE GENERIC SOLUTION
264if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then
265    IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ;
266fi
267
268# DODS copy
269IGCM_sys_TestDirArchive ${R_SAVE}/${R_ATLAS}
270[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
271
272# Clean RUN_DIR_PATH (necessary for cesium)
273IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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