[622] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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[626] | 4 | #-Q- curie #MSUB -r ATL_ORCH # Nom du job |
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[622] | 5 | #-Q- curie #MSUB -eo |
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| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 7 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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[741] | 8 | #-Q- curie #MSUB -q xlarge |
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[704] | 9 | #-Q- curie #MSUB -Q normal |
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[681] | 10 | #-Q- curie set +x |
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[770] | 11 | #-Q- ada #!/bin/ksh |
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| 12 | #-Q- ada ####################### |
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| 13 | #-Q- ada ## ADA IDRIS ## |
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| 14 | #-Q- ada ####################### |
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| 15 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 16 | #-Q- ada # @ wall_clock_limit = 1:00:00 |
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| 17 | #-Q- ada # Nom du travail LoadLeveler |
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| 18 | #-Q- ada # @ job_name = ATL_ORCH |
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| 19 | #-Q- ada # Fichier de sortie standard du travail |
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| 20 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 21 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 22 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 23 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 24 | #-Q- ada # @ notification = error |
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| 25 | #-Q- ada # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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| 26 | #-Q- ada # @ queue |
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[172] | 27 | #-Q- sx9mercure #!/bin/ksh |
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[616] | 28 | #-Q- sx9mercure ###################### |
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| 29 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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| 30 | #-Q- sx9mercure ###################### |
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| 31 | #-Q- sx9mercure #PBS -N ATL_ORCH # Nom du job |
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| 32 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 33 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 34 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 35 | #-Q- sx9mercure #PBS -l elapstim_req=1:00:00 # Limite temps a 2 heures |
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| 36 | #-Q- sx9mercure #PBS -q scalaire |
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[640] | 37 | #-Q- sx9mercure #PBS -r n |
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[222] | 38 | #-Q- titane #!/bin/ksh |
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| 39 | #-Q- titane ###################### |
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| 40 | #-Q- titane ## TITANE CEA ## |
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| 41 | #-Q- titane ###################### |
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| 42 | #-Q- titane #MSUB -r ATL_ORCH # Nom du job |
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[544] | 43 | #-Q- titane #MSUB -eo |
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[222] | 44 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 45 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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[544] | 46 | #-Q- titane #MSUB -q mono |
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[643] | 47 | #-Q- titane #MSUB -E '-rn' |
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[281] | 48 | #-Q- lxiv8 ###################### |
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| 49 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 50 | #-Q- lxiv8 ###################### |
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| 51 | #-Q- lxiv8 #PBS -N ATL_ORCH |
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| 52 | #-Q- lxiv8 #PBS -m a |
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| 53 | #-Q- lxiv8 #PBS -j oe |
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| 54 | #-Q- lxiv8 #PBS -q medium |
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| 55 | #-Q- lxiv8 #PBS -o ATL_ORCH.$$ |
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| 56 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[2] | 57 | #-Q- default #!/bin/ksh |
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| 58 | #-Q- default ################## |
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| 59 | #-Q- default ## DEFAULT HOST ## |
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| 60 | #-Q- default ################## |
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| 61 | |
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[373] | 62 | #************************************************************** |
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| 63 | # Author: Martial Mancip |
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| 64 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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| 65 | # $Revision:: $ Revision of last commit |
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| 66 | # $Author:: $ Author of last commit |
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| 67 | # $Date:: $ Date of last commit |
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[2] | 68 | # IPSL (2006) |
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| 69 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 70 | # |
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| 71 | #************************************************************** |
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[2] | 72 | |
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[108] | 73 | #set -eu |
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| 74 | #set -vx |
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| 75 | |
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[2] | 76 | date |
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| 77 | |
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[770] | 78 | #-Q- ada export OMP_NUM_THREADS=1 |
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[2] | 79 | |
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[712] | 80 | #D- Task type (computing or post-processing) |
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| 81 | TaskType=post-processing |
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| 82 | |
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[2] | 83 | ######################################################################## |
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| 84 | |
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[108] | 85 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 86 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 87 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 88 | #------- |
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| 89 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[731] | 90 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[832] | 91 | #------- |
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| 92 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 93 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 94 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[2] | 95 | |
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| 96 | ######################################################################## |
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| 97 | |
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| 98 | #set -vx |
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| 99 | |
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[263] | 100 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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| 101 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 102 | |
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[436] | 103 | # ------------------------------------------------------------------ |
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| 104 | # Test if all was right before proceeding further |
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| 105 | # ------------------------------------------------------------------ |
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| 106 | IGCM_debug_Verif_Exit_Post |
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| 107 | |
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[263] | 108 | if [ ${StandAlone} = true ] ; then |
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| 109 | CARD_DIR=${SUBMIT_DIR} |
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| 110 | else |
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[647] | 111 | CARD_DIR=${RUN_DIR_PATH} |
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[640] | 112 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 113 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 114 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 115 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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[263] | 116 | fi |
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[727] | 117 | |
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| 118 | #================================== |
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[263] | 119 | # First of all |
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| 120 | # |
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[727] | 121 | # Read libIGCM compatibility version in config.card |
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| 122 | # Read UserChoices section |
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| 123 | # Read Ensemble section |
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| 124 | # Read Post section |
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| 125 | # Define all netcdf output directories |
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| 126 | #================================== |
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| 127 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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[658] | 128 | |
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[263] | 129 | # |
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[591] | 130 | IGCM_sys_MkdirArchive ${R_FIGR} |
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[263] | 131 | |
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[2] | 132 | R_ATLAS=ATLAS/SE_${YEARS} |
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| 133 | R_OUT_SRF=${R_SAVE}/SRF |
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[370] | 134 | DIR_OUT=${DIR_OUT:=SE} |
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[2] | 135 | |
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| 136 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS} |
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| 137 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 138 | IGCM_sys_Cd ${RUN_DIR} |
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| 139 | |
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| 140 | # -------------------------------------------- |
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| 141 | # Insert your commands between III...III lines |
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| 142 | # and precise produced directories to save |
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| 143 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 144 | |
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[370] | 145 | IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR} |
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[2] | 146 | |
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| 147 | atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \ |
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| 148 | ${FER_ATLAS}/atlas_p_SECHIBA_diag1_*.cfg \ |
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| 149 | ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc |
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| 150 | |
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| 151 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 152 | |
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| 153 | # Put ferret journal files together |
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| 154 | for file in $( ls ${R_ATLAS}/SRF/*/*jnl ) ; do |
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| 155 | echo -e "\n\n################################" ; |
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| 156 | echo -e "$file\n" ; cat $file ; |
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| 157 | done > ${R_ATLAS}/SRF/allferretscript.txt |
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| 158 | |
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| 159 | # Clear some files |
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| 160 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
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| 161 | |
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| 162 | # Save files |
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[587] | 163 | IGCM_sys_Put_Dir ATLAS ${R_FIGR} |
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[2] | 164 | IGCM_sys_Rm -Rf ATLAS |
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| 165 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc |
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| 166 | |
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| 167 | # DODS copy |
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[587] | 168 | IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS} |
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[67] | 169 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
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[203] | 170 | |
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[590] | 171 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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[203] | 172 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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