1 | #-Q- cesium #!/bin/ksh |
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2 | #-Q- cesium ###################### |
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3 | #-Q- cesium ## CESIUM CEA ## |
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4 | #-Q- cesium ###################### |
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5 | #-Q- cesium #MSUB -r ATL_ORCH # Nom du job |
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6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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9 | #-Q- cesium #MSUB -E "-j o" |
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10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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11 | #-Q- curie ###################### |
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12 | #-Q- curie ## CURIE TGCC/CEA ## |
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13 | #-Q- curie ###################### |
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14 | #-Q- curie #MSUB -r ATL_ORCH # Nom du job |
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15 | #-Q- curie #MSUB -eo |
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16 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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17 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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18 | #-Q- curie #MSUB -E '--no-requeue' |
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19 | #-Q- curie #MSUB -q large |
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20 | #-Q- curie #MSUB -Q normal |
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21 | #-Q- curie set +x |
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22 | #-Q- platine #!/usr/bin/ksh |
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23 | #-Q- platine ################## |
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24 | #-Q- platine ## PLATINE CEA ## |
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25 | #-Q- platine ################## |
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26 | #-Q- platine #BSUB -J ATL_ORCH # Nom du job |
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27 | #-Q- platine #BSUB -N # message a la fin du job |
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28 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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29 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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30 | #-Q- platine #BSUB -q post # Passage en queue post |
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31 | #-Q- platine #BSUB -L /bin/ksh |
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32 | #-Q- sx8brodie #!/bin/ksh |
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33 | #-Q- sx8brodie ####################### |
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34 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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35 | #-Q- sx8brodie ####################### |
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36 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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37 | #-Q- sx8brodie # @ wall_clock_limit = 1:00:00 |
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38 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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39 | #-Q- sx8brodie # @ job_name = ATL_ORCH |
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40 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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41 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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42 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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43 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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44 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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45 | #-Q- sx8brodie # @ notification = error |
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46 | #-Q- sx8brodie # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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47 | #-Q- sx8brodie # @ queue |
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48 | #-Q- aix6 #!/bin/ksh |
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49 | #-Q- aix6 ####################### |
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50 | #-Q- aix6 ## VARGAS IDRIS ## |
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51 | #-Q- aix6 ####################### |
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52 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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53 | #-Q- aix6 # @ wall_clock_limit = 1:00:00 |
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54 | #-Q- aix6 # Nom du travail LoadLeveler |
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55 | #-Q- aix6 # @ job_name = ATL_ORCH |
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56 | #-Q- aix6 # Fichier de sortie standard du travail |
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57 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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58 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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59 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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60 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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61 | #-Q- aix6 # @ notification = error |
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62 | #-Q- aix6 # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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63 | #-Q- aix6 # @ queue |
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64 | #-Q- ulam #!/bin/ksh |
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65 | #-Q- ulam ####################### |
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66 | #-Q- ulam ## ULAM IDRIS ## |
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67 | #-Q- ulam ####################### |
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68 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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69 | #-Q- ulam # @ wall_clock_limit = 1:00:00 |
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70 | #-Q- ulam # Nom du travail LoadLeveler |
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71 | #-Q- ulam # @ job_name = ATL_ORCH |
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72 | #-Q- ulam # Fichier de sortie standard du travail |
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73 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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74 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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75 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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76 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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77 | #-Q- ulam # @ notification = error |
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78 | #-Q- ulam # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
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79 | #-Q- ulam # @ queue |
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80 | #-Q- sx8mercure #!/bin/ksh |
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81 | #-Q- sx8mercure ###################### |
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82 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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83 | #-Q- sx8mercure ###################### |
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84 | #-Q- sx8mercure #PBS -N ATL_ORCH # Nom du job |
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85 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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86 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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87 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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88 | #-Q- sx8mercure #PBS -l cputim_job=1:00:00 # Limite temps a 2 heures |
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89 | #-Q- sx8mercure #PBS -q scalaire |
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90 | #-Q- sx8mercure #PBS -r n |
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91 | #-Q- sx9mercure #!/bin/ksh |
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92 | #-Q- sx9mercure ###################### |
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93 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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94 | #-Q- sx9mercure ###################### |
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95 | #-Q- sx9mercure #PBS -N ATL_ORCH # Nom du job |
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96 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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97 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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98 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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99 | #-Q- sx9mercure #PBS -l elapstim_req=1:00:00 # Limite temps a 2 heures |
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100 | #-Q- sx9mercure #PBS -q scalaire |
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101 | #-Q- sx9mercure #PBS -r n |
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102 | #-Q- titane #!/bin/ksh |
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103 | #-Q- titane ###################### |
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104 | #-Q- titane ## TITANE CEA ## |
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105 | #-Q- titane ###################### |
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106 | #-Q- titane #MSUB -r ATL_ORCH # Nom du job |
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107 | #-Q- titane #MSUB -eo |
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108 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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109 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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110 | #-Q- titane #MSUB -q mono |
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111 | #-Q- titane #MSUB -E '-rn' |
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112 | #-Q- lxiv8 ###################### |
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113 | #-Q- lxiv8 ## OBELIX LSCE ## |
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114 | #-Q- lxiv8 ###################### |
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115 | #-Q- lxiv8 #PBS -N ATL_ORCH |
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116 | #-Q- lxiv8 #PBS -m a |
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117 | #-Q- lxiv8 #PBS -j oe |
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118 | #-Q- lxiv8 #PBS -q medium |
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119 | #-Q- lxiv8 #PBS -o ATL_ORCH.$$ |
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120 | #-Q- lxiv8 #PBS -S /bin/ksh |
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121 | #-Q- default #!/bin/ksh |
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122 | #-Q- default ################## |
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123 | #-Q- default ## DEFAULT HOST ## |
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124 | #-Q- default ################## |
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125 | |
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126 | #************************************************************** |
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127 | # Author: Martial Mancip |
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128 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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129 | # $Revision:: $ Revision of last commit |
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130 | # $Author:: $ Author of last commit |
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131 | # $Date:: $ Date of last commit |
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132 | # IPSL (2006) |
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133 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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134 | # |
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135 | #************************************************************** |
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136 | |
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137 | #set -eu |
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138 | #set -vx |
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139 | |
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140 | date |
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141 | |
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142 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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143 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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144 | #-Q- ulam export OMP_NUM_THREADS=1 |
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145 | |
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146 | #D- Task type (computing or post-processing) |
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147 | TaskType=post-processing |
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148 | |
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149 | ######################################################################## |
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150 | |
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151 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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152 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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153 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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154 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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155 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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156 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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157 | #------- |
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158 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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159 | |
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160 | ######################################################################## |
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161 | |
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162 | #set -vx |
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163 | |
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164 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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165 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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166 | |
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167 | # ------------------------------------------------------------------ |
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168 | # Test if all was right before proceeding further |
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169 | # ------------------------------------------------------------------ |
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170 | IGCM_debug_Verif_Exit_Post |
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171 | |
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172 | if [ ${StandAlone} = true ] ; then |
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173 | CARD_DIR=${SUBMIT_DIR} |
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174 | else |
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175 | CARD_DIR=${RUN_DIR_PATH} |
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176 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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177 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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178 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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179 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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180 | fi |
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181 | |
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182 | #================================== |
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183 | # First of all |
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184 | # |
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185 | # Read libIGCM compatibility version in config.card |
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186 | # Read UserChoices section |
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187 | # Read Ensemble section |
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188 | # Read Post section |
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189 | # Define all netcdf output directories |
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190 | #================================== |
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191 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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192 | |
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193 | # |
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194 | IGCM_sys_MkdirArchive ${R_FIGR} |
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195 | |
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196 | R_ATLAS=ATLAS/SE_${YEARS} |
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197 | R_OUT_SRF=${R_SAVE}/SRF |
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198 | DIR_OUT=${DIR_OUT:=SE} |
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199 | |
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200 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS} |
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201 | IGCM_sys_MkdirWork ${RUN_DIR} |
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202 | IGCM_sys_Cd ${RUN_DIR} |
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203 | |
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204 | # -------------------------------------------- |
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205 | # Insert your commands between III...III lines |
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206 | # and precise produced directories to save |
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207 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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208 | |
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209 | IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR} |
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210 | |
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211 | atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \ |
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212 | ${FER_ATLAS}/atlas_p_SECHIBA_diag1_*.cfg \ |
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213 | ${FER_ATLAS}/atlas_p_ORCHIDEE_diag2_a.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc |
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214 | |
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215 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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216 | |
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217 | # Put ferret journal files together |
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218 | for file in $( ls ${R_ATLAS}/SRF/*/*jnl ) ; do |
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219 | echo -e "\n\n################################" ; |
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220 | echo -e "$file\n" ; cat $file ; |
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221 | done > ${R_ATLAS}/SRF/allferretscript.txt |
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222 | |
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223 | # Clear some files |
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224 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
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225 | |
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226 | # Save files |
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227 | IGCM_sys_Put_Dir ATLAS ${R_FIGR} |
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228 | IGCM_sys_Rm -Rf ATLAS |
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229 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc |
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230 | |
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231 | # DODS copy |
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232 | IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS} |
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233 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
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234 | |
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235 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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236 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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