[622] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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[906] | 4 | #-Q- curie #MSUB -r ATL_PIS # Nom du job |
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[622] | 5 | #-Q- curie #MSUB -eo |
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| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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[880] | 7 | #-Q- curie #MSUB -T 7200 # Limite de temps elapsed du job |
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[1154] | 8 | #-Q- curie #MSUB -q ::default_node:: |
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[1274] | 9 | #-Q- curie #MSUB -c ::default_core:: |
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[704] | 10 | #-Q- curie #MSUB -Q normal |
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[837] | 11 | #-Q- curie #MSUB -A ::default_project:: |
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[681] | 12 | #-Q- curie set +x |
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[1437] | 13 | #-Q- irene ###################### |
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| 14 | #-Q- irene ## IRENE TGCC/CEA ## |
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| 15 | #-Q- irene ###################### |
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| 16 | #-Q- irene #MSUB -r ATL_PIS # Job name |
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| 17 | #-Q- irene #MSUB -eo |
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| 18 | #-Q- irene #MSUB -n 1 |
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| 19 | #-Q- irene #MSUB -T 7200 # Maximum elapsed time |
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| 20 | #-Q- irene #MSUB -q skylake |
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| 21 | #-Q- irene #MSUB -c 4 |
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| 22 | #-Q- irene #MSUB -Q normal |
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| 23 | #-Q- irene #MSUB -A ::default_project:: |
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[1448] | 24 | #-Q- irene ###MSUB -m store,work,scratch |
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| 25 | #-Q- irene #MSUB -E '--licenses=fs_unshare,fs_work,fs_store,fs_scratch' |
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[1437] | 26 | #-Q- irene set +x |
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[770] | 27 | #-Q- ada #!/bin/ksh |
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| 28 | #-Q- ada ####################### |
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[929] | 29 | #-Q- ada ## ADA IDRIS ## |
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[770] | 30 | #-Q- ada ####################### |
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[1409] | 31 | #-Q- ada # @ job_type = mpich |
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[848] | 32 | #-Q- ada # @ requirements = (Feature == "prepost") |
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[770] | 33 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 34 | #-Q- ada # @ wall_clock_limit = 1:00:00 |
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| 35 | #-Q- ada # Nom du travail LoadLeveler |
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| 36 | #-Q- ada # @ job_name = ATL_PIS |
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[906] | 37 | #-Q- ada # Fichier de sortie standard du travail |
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[770] | 38 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 39 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 40 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 41 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 42 | #-Q- ada # @ notification = error |
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[1290] | 43 | #-Q- ada # @ environment = $POST_DIR ; $Script_Post_Output ; $SUBMIT_DIR ; $libIGCM ; $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX ; wall_clock_limit=$(wall_clock_limit) |
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[770] | 44 | #-Q- ada # @ queue |
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[929] | 45 | #-Q- lxiv8 ###################### |
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| 46 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 47 | #-Q- lxiv8 ###################### |
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| 48 | #-Q- lxiv8 #PBS -N ATL_PIS |
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| 49 | #-Q- lxiv8 #PBS -m a |
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| 50 | #-Q- lxiv8 #PBS -j oe |
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| 51 | #-Q- lxiv8 #PBS -q test |
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| 52 | #-Q- lxiv8 #PBS -o ATL_PIS.$$ |
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| 53 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[1184] | 54 | #-Q- ifort_CICLAD ###################### |
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| 55 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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| 56 | #-Q- ifort_CICLAD ###################### |
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| 57 | #-Q- ifort_CICLAD #PBS -N ATL_PIS |
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| 58 | #-Q- ifort_CICLAD #PBS -m a |
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| 59 | #-Q- ifort_CICLAD #PBS -j oe |
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| 60 | #-Q- ifort_CICLAD #PBS -q std |
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| 61 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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[242] | 62 | #-Q- default #!/bin/ksh |
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| 63 | #-Q- default ################## |
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| 64 | #-Q- default ## DEFAULT HOST ## |
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| 65 | #-Q- default ################## |
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| 66 | |
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[373] | 67 | #************************************************************** |
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| 68 | # Author: Christian Ethe |
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| 69 | # Contact: Christian.Ethe__at__ipsl.jussieu.fr |
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| 70 | # $Revision:: $ Revision of last commit |
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| 71 | # $Author:: $ Author of last commit |
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| 72 | # $Date:: $ Date of last commit |
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[242] | 73 | # IPSL (2006) |
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| 74 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 75 | # |
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| 76 | #************************************************************** |
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[242] | 77 | |
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| 78 | #set -eu |
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[906] | 79 | #set -vx |
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[242] | 80 | |
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| 81 | date |
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| 82 | |
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[770] | 83 | #-Q- ada export OMP_NUM_THREADS=1 |
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[242] | 84 | |
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[1356] | 85 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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[712] | 86 | TaskType=post-processing |
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| 87 | |
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[242] | 88 | ######################################################################## |
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| 89 | |
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| 90 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 91 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 92 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 93 | #------- |
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| 94 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[731] | 95 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[832] | 96 | #------- |
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[1192] | 97 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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| 98 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 99 | #------- |
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[832] | 100 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 101 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 102 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[242] | 103 | |
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| 104 | ######################################################################## |
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| 105 | |
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[906] | 106 | #set -vx |
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[242] | 107 | |
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[436] | 108 | # ------------------------------------------------------------------ |
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| 109 | # Test if all was right before proceeding further |
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| 110 | # ------------------------------------------------------------------ |
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[1206] | 111 | IGCM_debug_Verif_Exit |
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[436] | 112 | |
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[263] | 113 | if [ ${StandAlone} = true ] ; then |
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| 114 | CARD_DIR=${SUBMIT_DIR} |
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| 115 | else |
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[647] | 116 | CARD_DIR=${RUN_DIR_PATH} |
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[640] | 117 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 118 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 119 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 120 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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[263] | 121 | fi |
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[727] | 122 | |
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| 123 | #================================== |
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[263] | 124 | # First of all |
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| 125 | # |
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[727] | 126 | # Read libIGCM compatibility version in config.card |
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| 127 | # Read UserChoices section |
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| 128 | # Read Ensemble section |
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| 129 | # Read Post section |
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| 130 | # Define all netcdf output directories |
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| 131 | #================================== |
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| 132 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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[263] | 133 | |
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[1198] | 134 | # ------------------------------------------------------------------ |
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| 135 | # Activate BigBrother so as to supervise this job |
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| 136 | # ------------------------------------------------------------------ |
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| 137 | IGCM_debug_BigBro_Initialize |
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[263] | 138 | |
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[1198] | 139 | #================================== |
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| 140 | # Then set up several directories |
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| 141 | #================================== |
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[242] | 142 | R_ATLAS=ATLAS/SE_${YEARS} |
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| 143 | R_OUT_MBG=${R_SAVE}/MBG |
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[370] | 144 | DIR_OUT=${DIR_OUT:=SE} |
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[242] | 145 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS} |
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[1198] | 146 | IGCM_sys_MkdirArchive ${R_FIGR} |
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[242] | 147 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 148 | IGCM_sys_Cd ${RUN_DIR} |
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| 149 | |
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| 150 | # -------------------------------------------- |
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| 151 | # Insert your commands between III...III lines |
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| 152 | # and precise produced directories to save |
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| 153 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 154 | |
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[370] | 155 | IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc ${RUN_DIR} |
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| 156 | IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc ${RUN_DIR} |
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[242] | 157 | |
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| 158 | |
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[1350] | 159 | ls ${CARD_DIR}/POST/atlas_p_${RESOL_OCE}PISCES_diag0_a.cfg 2>/dev/null 1>&2 |
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[1279] | 160 | |
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[1350] | 161 | ls ${CARD_DIR}/POST/ | egrep "atlas_p_${RESOL_OCE}PISCES_(diag1|diag0_a).*\.cfg" 2>/dev/null 1>&2 |
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[1279] | 162 | [ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST |
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[1350] | 163 | IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}PISCES_diag1_*.cfg ${PATH_ATLAS}/atlas_p_${RESOL_OCE}PISCES_diag0_a.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc |
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[1279] | 164 | |
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[1350] | 165 | ls ${CARD_DIR}/POST/ | egrep "atlas_p_${RESOL_OCE}PISCES_(diag2_a|diag0_b).*\.cfg" 2>/dev/null 1>&2 |
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[1279] | 166 | [ ${?} -ne 0 ] && PATH_ATLAS=${FER_ATLAS} || PATH_ATLAS=${CARD_DIR}/POST |
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[1350] | 167 | IGCM_sys_atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${PATH_ATLAS}/atlas_p_${RESOL_OCE}PISCES_diag2_a.cfg ${PATH_ATLAS}/atlas_p_${RESOL_OCE}PISCES_diag0_b.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc |
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[1279] | 168 | |
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[242] | 169 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 170 | |
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| 171 | # Put ferret journal files together |
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| 172 | for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do |
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| 173 | echo -e "\n\n################################" ; |
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| 174 | echo -e "$file\n" ; cat $file ; |
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| 175 | done > ${R_ATLAS}/MBG_T/allferretscript.txt |
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| 176 | |
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| 177 | for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do |
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| 178 | echo -e "\n\n################################" ; |
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| 179 | echo -e "$file\n" ; cat $file ; |
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| 180 | done > ${R_ATLAS}/MBG_F/allferretscript.txt |
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| 181 | # Clear some files |
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| 182 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
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| 183 | |
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| 184 | # Save files |
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[587] | 185 | IGCM_sys_Put_Dir ATLAS ${R_FIGR} |
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[242] | 186 | |
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| 187 | IGCM_sys_Rm -Rf ATLAS |
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| 188 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc |
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| 189 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc |
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| 190 | |
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| 191 | # DODS copy |
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[903] | 192 | if [ X${config_Post_DodsCopy} = XTRUE ] ; then |
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| 193 | IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS} |
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| 194 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
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| 195 | fi |
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[242] | 196 | |
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[590] | 197 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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[242] | 198 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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[1198] | 199 | |
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| 200 | # ------------------------------------------------------------------ |
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| 201 | # Finalize BigBrother to inform that the jobs end |
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| 202 | # ------------------------------------------------------------------ |
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| 203 | IGCM_debug_BigBro_Finalize |
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