[314] | 1 | #-Q- cesium #!/bin/ksh |
---|
| 2 | #-Q- cesium ###################### |
---|
| 3 | #-Q- cesium ## CESIUM CEA ## |
---|
| 4 | #-Q- cesium ###################### |
---|
| 5 | #-Q- cesium #MSUB -r ATL_PIS # Nom du job |
---|
| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
---|
| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
---|
| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
---|
| 9 | #-Q- cesium #MSUB -E "-j o" |
---|
| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
---|
[622] | 11 | #-Q- curie ###################### |
---|
| 12 | #-Q- curie ## CURIE TGCC/CEA ## |
---|
| 13 | #-Q- curie ###################### |
---|
[626] | 14 | #-Q- curie #MSUB -r ATL_PIS # Nom du job |
---|
[622] | 15 | #-Q- curie #MSUB -eo |
---|
| 16 | #-Q- curie #MSUB -n 1 # Reservation du processus |
---|
| 17 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
---|
[741] | 18 | #-Q- curie #MSUB -q xlarge |
---|
[704] | 19 | #-Q- curie #MSUB -Q normal |
---|
[681] | 20 | #-Q- curie set +x |
---|
[242] | 21 | #-Q- platine #!/usr/bin/ksh |
---|
| 22 | #-Q- platine ################## |
---|
| 23 | #-Q- platine ## PLATINE CEA ## |
---|
| 24 | #-Q- platine ################## |
---|
| 25 | #-Q- platine #BSUB -J ATL_PIS # Nom du job |
---|
| 26 | #-Q- platine #BSUB -N # message a la fin du job |
---|
| 27 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
---|
| 28 | #-Q- platine #BSUB -W 1:00 # Limite temps |
---|
| 29 | #-Q- platine #BSUB -q post # Passage en queue post |
---|
[426] | 30 | #-Q- platine #BSUB -L /bin/ksh |
---|
[242] | 31 | #-Q- sx8brodie #!/bin/ksh |
---|
| 32 | #-Q- sx8brodie ####################### |
---|
| 33 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
---|
| 34 | #-Q- sx8brodie ####################### |
---|
| 35 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
---|
[504] | 36 | #-Q- sx8brodie # @ wall_clock_limit = 1:00:00 |
---|
[242] | 37 | #-Q- sx8brodie # Nom du travail LoadLeveler |
---|
| 38 | #-Q- sx8brodie # @ job_name = ATL_PIS |
---|
| 39 | #-Q- sx8brodie # Fichier de sortie standard du travail |
---|
| 40 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
---|
| 41 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
---|
| 42 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
---|
| 43 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 44 | #-Q- sx8brodie # @ notification = error |
---|
[370] | 45 | #-Q- sx8brodie # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
---|
[242] | 46 | #-Q- sx8brodie # @ queue |
---|
| 47 | #-Q- aix6 #!/bin/ksh |
---|
| 48 | #-Q- aix6 ####################### |
---|
| 49 | #-Q- aix6 ## VARGAS IDRIS ## |
---|
| 50 | #-Q- aix6 ####################### |
---|
| 51 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
---|
[504] | 52 | #-Q- aix6 # @ wall_clock_limit = 1:00:00 |
---|
[242] | 53 | #-Q- aix6 # Nom du travail LoadLeveler |
---|
| 54 | #-Q- aix6 # @ job_name = ATL_PIS |
---|
| 55 | #-Q- aix6 # Fichier de sortie standard du travail |
---|
| 56 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
---|
| 57 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
---|
| 58 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
---|
| 59 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 60 | #-Q- aix6 # @ notification = error |
---|
[370] | 61 | #-Q- aix6 # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
---|
[242] | 62 | #-Q- aix6 # @ queue |
---|
[386] | 63 | #-Q- ulam #!/bin/ksh |
---|
| 64 | #-Q- ulam ####################### |
---|
| 65 | #-Q- ulam ## ULAM IDRIS ## |
---|
| 66 | #-Q- ulam ####################### |
---|
| 67 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
---|
[500] | 68 | #-Q- ulam # @ wall_clock_limit = 1:00:00 |
---|
[386] | 69 | #-Q- ulam # Nom du travail LoadLeveler |
---|
| 70 | #-Q- ulam # @ job_name = ATL_PIS |
---|
| 71 | #-Q- ulam # Fichier de sortie standard du travail |
---|
| 72 | #-Q- ulam # @ output = $(job_name).$(jobid) |
---|
| 73 | #-Q- ulam # Fichier de sortie d'erreur du travail |
---|
| 74 | #-Q- ulam # @ error = $(job_name).$(jobid) |
---|
| 75 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 76 | #-Q- ulam # @ notification = error |
---|
| 77 | #-Q- ulam # @ environment = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX |
---|
| 78 | #-Q- ulam # @ queue |
---|
[242] | 79 | #-Q- sx8mercure #!/bin/ksh |
---|
| 80 | #-Q- sx8mercure ###################### |
---|
| 81 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
---|
| 82 | #-Q- sx8mercure ###################### |
---|
| 83 | #-Q- sx8mercure #PBS -N ATL_PIS # Nom du job |
---|
| 84 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
---|
| 85 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
---|
| 86 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
---|
| 87 | #-Q- sx8mercure #PBS -l cputim_job=2:00:00 # Limite temps a 2 heures |
---|
[299] | 88 | #-Q- sx8mercure #PBS -q scalaire |
---|
[640] | 89 | #-Q- sx8mercure #PBS -r n |
---|
[242] | 90 | #-Q- sx9mercure #!/bin/ksh |
---|
[616] | 91 | #-Q- sx9mercure ###################### |
---|
| 92 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
---|
| 93 | #-Q- sx9mercure ###################### |
---|
| 94 | #-Q- sx9mercure #PBS -N ATL_PIS # Nom du job |
---|
| 95 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
---|
| 96 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
---|
| 97 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
---|
| 98 | #-Q- sx9mercure #PBS -l elapstim_req=2:00:00 # Limite temps a 2 heures |
---|
| 99 | #-Q- sx9mercure #PBS -q scalaire |
---|
[640] | 100 | #-Q- sx9mercure #PBS -r n |
---|
[314] | 101 | #-Q- titane #!/bin/ksh |
---|
| 102 | #-Q- titane ###################### |
---|
| 103 | #-Q- titane ## TITANE CEA ## |
---|
| 104 | #-Q- titane ###################### |
---|
[544] | 105 | #-Q- titane #MSUB -r ATL_PIS # Nom du job |
---|
| 106 | #-Q- titane #MSUB -eo |
---|
[314] | 107 | #-Q- titane #MSUB -n 1 # Reservation du processus |
---|
| 108 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
---|
[544] | 109 | #-Q- titane #MSUB -q mono |
---|
[643] | 110 | #-Q- titane #MSUB -E '-rn' |
---|
[242] | 111 | #-Q- default #!/bin/ksh |
---|
| 112 | #-Q- default ################## |
---|
| 113 | #-Q- default ## DEFAULT HOST ## |
---|
| 114 | #-Q- default ################## |
---|
| 115 | |
---|
[373] | 116 | #************************************************************** |
---|
| 117 | # Author: Christian Ethe |
---|
| 118 | # Contact: Christian.Ethe__at__ipsl.jussieu.fr |
---|
| 119 | # $Revision:: $ Revision of last commit |
---|
| 120 | # $Author:: $ Author of last commit |
---|
| 121 | # $Date:: $ Date of last commit |
---|
[242] | 122 | # IPSL (2006) |
---|
| 123 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
---|
[373] | 124 | # |
---|
| 125 | #************************************************************** |
---|
[242] | 126 | |
---|
| 127 | #set -eu |
---|
| 128 | #set -vx |
---|
| 129 | |
---|
| 130 | date |
---|
| 131 | |
---|
| 132 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
---|
| 133 | #-Q- aix6 export OMP_NUM_THREADS=1 |
---|
[386] | 134 | #-Q- ulam export OMP_NUM_THREADS=1 |
---|
[242] | 135 | |
---|
[712] | 136 | #D- Task type (computing or post-processing) |
---|
| 137 | TaskType=post-processing |
---|
| 138 | |
---|
[242] | 139 | ######################################################################## |
---|
| 140 | |
---|
| 141 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 142 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
---|
| 143 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 144 | ( ${DEBUG_debug} ) && IGCM_card_Check |
---|
| 145 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
| 146 | ( ${DEBUG_debug} ) && IGCM_date_Check |
---|
| 147 | #------- |
---|
| 148 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
[731] | 149 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
---|
[242] | 150 | |
---|
| 151 | ######################################################################## |
---|
| 152 | |
---|
| 153 | #set -vx |
---|
| 154 | |
---|
[263] | 155 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
---|
| 156 | IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
| 157 | |
---|
[436] | 158 | # ------------------------------------------------------------------ |
---|
| 159 | # Test if all was right before proceeding further |
---|
| 160 | # ------------------------------------------------------------------ |
---|
| 161 | IGCM_debug_Verif_Exit_Post |
---|
| 162 | |
---|
[263] | 163 | if [ ${StandAlone} = true ] ; then |
---|
| 164 | CARD_DIR=${SUBMIT_DIR} |
---|
| 165 | else |
---|
[647] | 166 | CARD_DIR=${RUN_DIR_PATH} |
---|
[640] | 167 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
---|
| 168 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
---|
| 169 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
---|
| 170 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
---|
[263] | 171 | fi |
---|
[727] | 172 | |
---|
| 173 | #================================== |
---|
[263] | 174 | # First of all |
---|
| 175 | # |
---|
[727] | 176 | # Read libIGCM compatibility version in config.card |
---|
| 177 | # Read UserChoices section |
---|
| 178 | # Read Ensemble section |
---|
| 179 | # Read Post section |
---|
| 180 | # Define all netcdf output directories |
---|
| 181 | #================================== |
---|
| 182 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
---|
[263] | 183 | |
---|
[591] | 184 | IGCM_sys_MkdirArchive ${R_FIGR} |
---|
[263] | 185 | |
---|
[242] | 186 | R_ATLAS=ATLAS/SE_${YEARS} |
---|
| 187 | R_OUT_MBG=${R_SAVE}/MBG |
---|
[370] | 188 | DIR_OUT=${DIR_OUT:=SE} |
---|
[242] | 189 | |
---|
| 190 | RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS} |
---|
| 191 | IGCM_sys_MkdirWork ${RUN_DIR} |
---|
| 192 | IGCM_sys_Cd ${RUN_DIR} |
---|
| 193 | |
---|
| 194 | # -------------------------------------------- |
---|
| 195 | # Insert your commands between III...III lines |
---|
| 196 | # and precise produced directories to save |
---|
| 197 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
---|
| 198 | |
---|
[370] | 199 | IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc ${RUN_DIR} |
---|
| 200 | IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc ${RUN_DIR} |
---|
[242] | 201 | |
---|
| 202 | atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg \ |
---|
| 203 | ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc |
---|
| 204 | atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg \ |
---|
| 205 | ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc |
---|
| 206 | |
---|
| 207 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
---|
| 208 | |
---|
| 209 | # Put ferret journal files together |
---|
| 210 | for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do |
---|
| 211 | echo -e "\n\n################################" ; |
---|
| 212 | echo -e "$file\n" ; cat $file ; |
---|
| 213 | done > ${R_ATLAS}/MBG_T/allferretscript.txt |
---|
| 214 | |
---|
| 215 | for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do |
---|
| 216 | echo -e "\n\n################################" ; |
---|
| 217 | echo -e "$file\n" ; cat $file ; |
---|
| 218 | done > ${R_ATLAS}/MBG_F/allferretscript.txt |
---|
| 219 | # Clear some files |
---|
| 220 | find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \; |
---|
| 221 | |
---|
| 222 | # Save files |
---|
[587] | 223 | IGCM_sys_Put_Dir ATLAS ${R_FIGR} |
---|
[242] | 224 | |
---|
| 225 | IGCM_sys_Rm -Rf ATLAS |
---|
| 226 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc |
---|
| 227 | IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc |
---|
| 228 | |
---|
| 229 | # DODS copy |
---|
[587] | 230 | IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS} |
---|
[242] | 231 | [ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS} |
---|
| 232 | |
---|
[590] | 233 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[242] | 234 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|