source: trunk/libIGCM/AA_atlas_PISCES @ 386

Last change on this file since 386 was 386, checked in by mafoipsl, 13 years ago

Add ulam header to facilitate post-processing on ulam directly.

  • Property svn:keywords set to Revision Author Date
File size: 10.0 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_PIS        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ##################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ##################
15#-Q- platine #BSUB -J ATL_PIS           # Nom du job
16#-Q- platine #BSUB -N                   # message a la fin du job
17#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 1:00              # Limite temps
19#-Q- platine #BSUB -q post              # Passage en queue post
20#-Q- sx8brodie #!/bin/ksh
21#-Q- sx8brodie #######################
22#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
23#-Q- sx8brodie #######################
24#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
25#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
26#-Q- sx8brodie # Nom du travail LoadLeveler
27#-Q- sx8brodie # @ job_name   = ATL_PIS
28#-Q- sx8brodie # Fichier de sortie standard du travail       
29#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
30#-Q- sx8brodie # Fichier de sortie d'erreur du travail
31#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
32#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
33#-Q- sx8brodie # @ notification = error
34#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
35#-Q- sx8brodie # @ queue
36#-Q- aix6 #!/bin/ksh
37#-Q- aix6 #######################
38#-Q- aix6 ##   VARGAS   IDRIS  ##
39#-Q- aix6 #######################
40#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
41#-Q- aix6 # @ wall_clock_limit = 10:00:00
42#-Q- aix6 # Nom du travail LoadLeveler
43#-Q- aix6 # @ job_name   = ATL_PIS
44#-Q- aix6 # Fichier de sortie standard du travail       
45#-Q- aix6 # @ output     = $(job_name).$(jobid)
46#-Q- aix6 # Fichier de sortie d'erreur du travail
47#-Q- aix6 # @ error      =  $(job_name).$(jobid)
48#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
49#-Q- aix6 # @ notification = error
50#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
51#-Q- aix6 # @ queue
52#-Q- ulam #!/bin/ksh
53#-Q- ulam #######################
54#-Q- ulam ##   ULAM   IDRIS  ##
55#-Q- ulam #######################
56#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
57#-Q- ulam # @ wall_clock_limit = 10:00:00
58#-Q- ulam # Nom du travail LoadLeveler
59#-Q- ulam # @ job_name   = ATL_PIS
60#-Q- ulam # Fichier de sortie standard du travail       
61#-Q- ulam # @ output     = $(job_name).$(jobid)
62#-Q- ulam # Fichier de sortie d'erreur du travail
63#-Q- ulam # @ error      =  $(job_name).$(jobid)
64#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
65#-Q- ulam # @ notification = error
66#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
67#-Q- ulam # @ queue
68#-Q- sx8mercure #!/bin/ksh
69#-Q- sx8mercure ######################
70#-Q- sx8mercure ## SX8MERCURE   CEA ##
71#-Q- sx8mercure ######################
72#-Q- sx8mercure #PBS -N  ATL_PIS             # Nom du job
73#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
74#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
75#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
76#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
77#-Q- sx8mercure #PBS -q scalaire
78#-Q- sx9mercure #!/bin/ksh
79#-Q- sx9mercure #########################
80#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
81#-Q- sx9mercure #########################
82#-Q- sx9mercure #MSUB -r ATL_PIS        # Nom du job               
83#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
84#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
85#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
86#-Q- sx9mercure #MSUB -E "-j o"
87#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
88#-Q- titane #!/bin/ksh
89#-Q- titane ######################
90#-Q- titane ## TITANE   CEA ##
91#-Q- titane ######################
92#-Q- titane #MSUB -r ATL_PIS        # Nom du job               
93#-Q- titane #MSUB -N 1              # Reservation du noeud
94#-Q- titane #MSUB -n 1              # Reservation du processus
95#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
96#-Q- titane #MSUB -E "-j o"
97#-Q- titane #MSUB -E "-S /bin/ksh"
98#-Q- titane ##MSUB -e nco.out        # Sortie standard
99#-Q- titane ##MSUB -o nco.out        # Sortie standard
100#-Q- default #!/bin/ksh
101#-Q- default ##################
102#-Q- default ## DEFAULT HOST ##
103#-Q- default ##################
104
105#**************************************************************
106# Author: Christian Ethe
107# Contact: Christian.Ethe__at__ipsl.jussieu.fr
108# $Revision::                                          $ Revision of last commit
109# $Author::                                            $ Author of last commit
110# $Date::                                              $ Date of last commit
111# IPSL (2006)
112#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
113#
114#**************************************************************
115
116#set -eu
117#set -vx
118
119date
120
121#-Q- sx8brodie export OMP_NUM_THREADS=1
122#-Q- aix6 export OMP_NUM_THREADS=1
123#-Q- ulam export OMP_NUM_THREADS=1
124
125########################################################################
126
127. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
128      ( ${DEBUG_debug} ) && IGCM_debug_Check
129. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
130     ( ${DEBUG_debug} ) && IGCM_card_Check
131. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
132     ( ${DEBUG_debug} ) && IGCM_date_Check
133#-------
134. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
135
136########################################################################
137
138#set -vx
139
140IGCM_sys_MkdirWork ${RUN_DIR_PATH}
141IGCM_sys_Cd ${RUN_DIR_PATH}
142
143if [ ${StandAlone} = true ] ; then
144    CARD_DIR=${SUBMIT_DIR}
145else
146    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
147    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
148fi
149#
150# First of all
151#
152IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
153typeset option
154for option in ${config_UserChoices[*]} ; do
155    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
156done
157
158#
159echo
160IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
161IGCM_debug_PrintVariables 3 config_UserChoices_JobName
162IGCM_debug_PrintVariables 3 config_UserChoices_LongName
163IGCM_debug_PrintVariables 3 config_UserChoices_TagName
164IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
165IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
166IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
167IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
168IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
169IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
170echo
171
172#==================================
173#R_SAVE : Job output directory
174if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
175    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
176    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
177    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
178else
179    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
180    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
181fi
182#
183
184R_ATLAS=ATLAS/SE_${YEARS}
185R_OUT_MBG=${R_SAVE}/MBG
186DIR_OUT=${DIR_OUT:=SE}
187
188RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS}
189IGCM_sys_MkdirWork ${RUN_DIR}
190IGCM_sys_Cd ${RUN_DIR}
191
192# --------------------------------------------
193# Insert your commands between III...III lines
194# and precise produced directories to save
195# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
196
197IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR}
198IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR}
199
200atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \
201                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
202atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg  \
203                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
204
205# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
206
207# Put ferret journal files together
208for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do
209    echo -e "\n\n################################" ;
210    echo -e "$file\n" ; cat $file ;
211done  > ${R_ATLAS}/MBG_T/allferretscript.txt
212
213for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do
214    echo -e "\n\n################################" ;
215    echo -e "$file\n" ; cat $file ;
216done  > ${R_ATLAS}/MBG_F/allferretscript.txt
217# Clear some files
218find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
219
220# Save files
221IGCM_sys_Put_Dir ATLAS ${R_SAVE}
222
223IGCM_sys_Rm -Rf ATLAS
224IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
225IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
226
227# DODS copy
228IGCM_sys_TestDirArchive ${R_SAVE}/${R_ATLAS}
229[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
230
231# Clean RUN_DIR_PATH (necessary for cesium)
232IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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