source: trunk/libIGCM/AA_atlas_PISCES @ 554

Last change on this file since 554 was 546, checked in by sdipsl, 12 years ago

R_BUFR defined in post-processing job
  • Property svn:keywords set to Revision Author Date
File size: 10.3 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_PIS        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ##################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ##################
15#-Q- platine #BSUB -J ATL_PIS           # Nom du job
16#-Q- platine #BSUB -N                   # message a la fin du job
17#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 1:00              # Limite temps
19#-Q- platine #BSUB -q post              # Passage en queue post
20#-Q- platine #BSUB -L /bin/ksh
21#-Q- sx8brodie #!/bin/ksh
22#-Q- sx8brodie #######################
23#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
24#-Q- sx8brodie #######################
25#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
26#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
27#-Q- sx8brodie # Nom du travail LoadLeveler
28#-Q- sx8brodie # @ job_name   = ATL_PIS
29#-Q- sx8brodie # Fichier de sortie standard du travail       
30#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
31#-Q- sx8brodie # Fichier de sortie d'erreur du travail
32#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
33#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
34#-Q- sx8brodie # @ notification = error
35#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
36#-Q- sx8brodie # @ queue
37#-Q- aix6 #!/bin/ksh
38#-Q- aix6 #######################
39#-Q- aix6 ##   VARGAS   IDRIS  ##
40#-Q- aix6 #######################
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 1:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = ATL_PIS
45#-Q- aix6 # Fichier de sortie standard du travail       
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
52#-Q- aix6 # @ queue
53#-Q- ulam #!/bin/ksh
54#-Q- ulam #######################
55#-Q- ulam ##   ULAM   IDRIS  ##
56#-Q- ulam #######################
57#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
58#-Q- ulam # @ wall_clock_limit = 1:00:00
59#-Q- ulam # Nom du travail LoadLeveler
60#-Q- ulam # @ job_name   = ATL_PIS
61#-Q- ulam # Fichier de sortie standard du travail       
62#-Q- ulam # @ output     = $(job_name).$(jobid)
63#-Q- ulam # Fichier de sortie d'erreur du travail
64#-Q- ulam # @ error      =  $(job_name).$(jobid)
65#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
66#-Q- ulam # @ notification = error
67#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
68#-Q- ulam # @ queue
69#-Q- sx8mercure #!/bin/ksh
70#-Q- sx8mercure ######################
71#-Q- sx8mercure ## SX8MERCURE   CEA ##
72#-Q- sx8mercure ######################
73#-Q- sx8mercure #PBS -N  ATL_PIS             # Nom du job
74#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
75#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
76#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
77#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
78#-Q- sx8mercure #PBS -q scalaire
79#-Q- sx9mercure #!/bin/ksh
80#-Q- sx9mercure #########################
81#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
82#-Q- sx9mercure #########################
83#-Q- sx9mercure #MSUB -r ATL_PIS        # Nom du job               
84#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
85#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
86#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
87#-Q- sx9mercure #MSUB -E "-j o"
88#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
89#-Q- titane #!/bin/ksh
90#-Q- titane ######################
91#-Q- titane ## TITANE   CEA ##
92#-Q- titane ######################
93#-Q- titane #MSUB -r ATL_PIS        # Nom du job
94#-Q- titane #MSUB -eo
95#-Q- titane #MSUB -n 1              # Reservation du processus
96#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
97#-Q- titane #MSUB -q mono
98#-Q- default #!/bin/ksh
99#-Q- default ##################
100#-Q- default ## DEFAULT HOST ##
101#-Q- default ##################
102
103#**************************************************************
104# Author: Christian Ethe
105# Contact: Christian.Ethe__at__ipsl.jussieu.fr
106# $Revision::                                          $ Revision of last commit
107# $Author::                                            $ Author of last commit
108# $Date::                                              $ Date of last commit
109# IPSL (2006)
110#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
111#
112#**************************************************************
113
114#set -eu
115#set -vx
116
117date
118
119#-Q- sx8brodie export OMP_NUM_THREADS=1
120#-Q- aix6 export OMP_NUM_THREADS=1
121#-Q- ulam export OMP_NUM_THREADS=1
122
123########################################################################
124
125. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
126      ( ${DEBUG_debug} ) && IGCM_debug_Check
127. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
128     ( ${DEBUG_debug} ) && IGCM_card_Check
129. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
130     ( ${DEBUG_debug} ) && IGCM_date_Check
131#-------
132. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
133
134########################################################################
135
136#set -vx
137
138IGCM_sys_MkdirWork ${RUN_DIR_PATH}
139IGCM_sys_Cd ${RUN_DIR_PATH}
140
141# ------------------------------------------------------------------
142# Test if all was right before proceeding further
143# ------------------------------------------------------------------
144IGCM_debug_Verif_Exit_Post
145
146if [ ${StandAlone} = true ] ; then
147    CARD_DIR=${SUBMIT_DIR}
148else
149    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
150    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
151fi
152#
153# First of all
154#
155IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
156typeset option
157for option in ${config_UserChoices[*]} ; do
158    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
159done
160
161#
162echo
163IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
164IGCM_debug_PrintVariables 3 config_UserChoices_JobName
165IGCM_debug_PrintVariables 3 config_UserChoices_LongName
166IGCM_debug_PrintVariables 3 config_UserChoices_TagName
167IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
168IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
169IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
170IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
171IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
172IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
173echo
174
175#==================================
176#R_SAVE : Job output directory
177#R_BUFR : Job output buffered directory
178if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
179    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
180    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
181    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
182    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
183else
184    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
185    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
186    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
187fi
188#
189
190R_ATLAS=ATLAS/SE_${YEARS}
191R_OUT_MBG=${R_SAVE}/MBG
192DIR_OUT=${DIR_OUT:=SE}
193
194RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS}
195IGCM_sys_MkdirWork ${RUN_DIR}
196IGCM_sys_Cd ${RUN_DIR}
197
198# --------------------------------------------
199# Insert your commands between III...III lines
200# and precise produced directories to save
201# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
202
203IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR}
204IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR}
205
206atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \
207                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
208atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg  \
209                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
210
211# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
212
213# Put ferret journal files together
214for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do
215    echo -e "\n\n################################" ;
216    echo -e "$file\n" ; cat $file ;
217done  > ${R_ATLAS}/MBG_T/allferretscript.txt
218
219for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do
220    echo -e "\n\n################################" ;
221    echo -e "$file\n" ; cat $file ;
222done  > ${R_ATLAS}/MBG_F/allferretscript.txt
223# Clear some files
224find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
225
226# Save files
227IGCM_sys_Put_Dir ATLAS ${R_SAVE}
228
229IGCM_sys_Rm -Rf ATLAS
230IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
231IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
232
233# DODS copy
234IGCM_sys_TestDirArchive ${R_SAVE}/${R_ATLAS}
235[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
236
237# Clean RUN_DIR_PATH (necessary for cesium)
238IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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