source: trunk/libIGCM/AA_atlas_PISCES @ 640

Last change on this file since 640 was 640, checked in by mafoipsl, 12 years ago

Add norerun option on SX front-end. Transfer specific files ie config.card COMP ... with IGCM_sys_Get_Master and modify IGCM_sys_Get_Master to allow file transfer. tested on ulam and SX front-end.
  • Property svn:keywords set to Revision Author Date
File size: 11.2 KB
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1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_PIS        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_PIS        # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- platine #!/usr/bin/ksh
19#-Q- platine ##################
20#-Q- platine ## PLATINE   CEA ##
21#-Q- platine ##################
22#-Q- platine #BSUB -J ATL_PIS           # Nom du job
23#-Q- platine #BSUB -N                   # message a la fin du job
24#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
25#-Q- platine #BSUB -W 1:00              # Limite temps
26#-Q- platine #BSUB -q post              # Passage en queue post
27#-Q- platine #BSUB -L /bin/ksh
28#-Q- sx8brodie #!/bin/ksh
29#-Q- sx8brodie #######################
30#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
31#-Q- sx8brodie #######################
32#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
33#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
34#-Q- sx8brodie # Nom du travail LoadLeveler
35#-Q- sx8brodie # @ job_name   = ATL_PIS
36#-Q- sx8brodie # Fichier de sortie standard du travail       
37#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
38#-Q- sx8brodie # Fichier de sortie d'erreur du travail
39#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
40#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
41#-Q- sx8brodie # @ notification = error
42#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
43#-Q- sx8brodie # @ queue
44#-Q- aix6 #!/bin/ksh
45#-Q- aix6 #######################
46#-Q- aix6 ##   VARGAS   IDRIS  ##
47#-Q- aix6 #######################
48#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
49#-Q- aix6 # @ wall_clock_limit = 1:00:00
50#-Q- aix6 # Nom du travail LoadLeveler
51#-Q- aix6 # @ job_name   = ATL_PIS
52#-Q- aix6 # Fichier de sortie standard du travail       
53#-Q- aix6 # @ output     = $(job_name).$(jobid)
54#-Q- aix6 # Fichier de sortie d'erreur du travail
55#-Q- aix6 # @ error      =  $(job_name).$(jobid)
56#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
57#-Q- aix6 # @ notification = error
58#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
59#-Q- aix6 # @ queue
60#-Q- ulam #!/bin/ksh
61#-Q- ulam #######################
62#-Q- ulam ##   ULAM   IDRIS  ##
63#-Q- ulam #######################
64#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
65#-Q- ulam # @ wall_clock_limit = 1:00:00
66#-Q- ulam # Nom du travail LoadLeveler
67#-Q- ulam # @ job_name   = ATL_PIS
68#-Q- ulam # Fichier de sortie standard du travail       
69#-Q- ulam # @ output     = $(job_name).$(jobid)
70#-Q- ulam # Fichier de sortie d'erreur du travail
71#-Q- ulam # @ error      =  $(job_name).$(jobid)
72#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
73#-Q- ulam # @ notification = error
74#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
75#-Q- ulam # @ queue
76#-Q- sx8mercure #!/bin/ksh
77#-Q- sx8mercure ######################
78#-Q- sx8mercure ## SX8MERCURE   CEA ##
79#-Q- sx8mercure ######################
80#-Q- sx8mercure #PBS -N  ATL_PIS             # Nom du job
81#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
82#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
83#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
84#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
85#-Q- sx8mercure #PBS -q scalaire
86#-Q- sx8mercure #PBS -r n
87#-Q- sx9mercure #!/bin/ksh
88#-Q- sx9mercure ######################
89#-Q- sx9mercure ## SX9MERCURE  CCRT ##
90#-Q- sx9mercure ######################
91#-Q- sx9mercure #PBS -N  ATL_PIS             # Nom du job
92#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
93#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
94#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
95#-Q- sx9mercure #PBS -l elapstim_req=2:00:00   # Limite temps a 2 heures
96#-Q- sx9mercure #PBS -q scalaire
97#-Q- sx9mercure #PBS -r n
98#-Q- titane #!/bin/ksh
99#-Q- titane ######################
100#-Q- titane ## TITANE   CEA ##
101#-Q- titane ######################
102#-Q- titane #MSUB -r ATL_PIS        # Nom du job
103#-Q- titane #MSUB -eo
104#-Q- titane #MSUB -n 1              # Reservation du processus
105#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
106#-Q- titane #MSUB -q mono
107#-Q- default #!/bin/ksh
108#-Q- default ##################
109#-Q- default ## DEFAULT HOST ##
110#-Q- default ##################
111
112#**************************************************************
113# Author: Christian Ethe
114# Contact: Christian.Ethe__at__ipsl.jussieu.fr
115# $Revision::                                          $ Revision of last commit
116# $Author::                                            $ Author of last commit
117# $Date::                                              $ Date of last commit
118# IPSL (2006)
119#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
120#
121#**************************************************************
122
123#set -eu
124#set -vx
125
126date
127
128#-Q- sx8brodie export OMP_NUM_THREADS=1
129#-Q- aix6 export OMP_NUM_THREADS=1
130#-Q- ulam export OMP_NUM_THREADS=1
131
132########################################################################
133
134. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
135      ( ${DEBUG_debug} ) && IGCM_debug_Check
136. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
137     ( ${DEBUG_debug} ) && IGCM_card_Check
138. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
139     ( ${DEBUG_debug} ) && IGCM_date_Check
140#-------
141. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
142
143########################################################################
144
145#set -vx
146
147IGCM_sys_MkdirWork ${RUN_DIR_PATH}
148IGCM_sys_Cd ${RUN_DIR_PATH}
149
150# ------------------------------------------------------------------
151# Test if all was right before proceeding further
152# ------------------------------------------------------------------
153IGCM_debug_Verif_Exit_Post
154
155if [ ${StandAlone} = true ] ; then
156    CARD_DIR=${SUBMIT_DIR}
157else
158    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
159    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
160    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
161    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
162    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
163fi
164#
165# First of all
166#
167IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
168typeset option
169for option in ${config_UserChoices[*]} ; do
170    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
171done
172
173#
174echo
175IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
176IGCM_debug_PrintVariables 3 config_UserChoices_JobName
177IGCM_debug_PrintVariables 3 config_UserChoices_LongName
178IGCM_debug_PrintVariables 3 config_UserChoices_TagName
179IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
180IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
181IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
182IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
183IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
184IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
185echo
186
187#==================================
188#R_SAVE : Job output directory
189#R_BUFR : Job output buffered directory
190if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
191    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
192    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
193    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
194    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
195    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
196else
197    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
198    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
199    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
200    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
201fi
202#
203IGCM_sys_MkdirArchive ${R_FIGR}
204
205R_ATLAS=ATLAS/SE_${YEARS}
206R_OUT_MBG=${R_SAVE}/MBG
207DIR_OUT=${DIR_OUT:=SE}
208
209RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS}
210IGCM_sys_MkdirWork ${RUN_DIR}
211IGCM_sys_Cd ${RUN_DIR}
212
213# --------------------------------------------
214# Insert your commands between III...III lines
215# and precise produced directories to save
216# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
217
218IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR}
219IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR}
220
221atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \
222                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
223atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg  \
224                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
225
226# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
227
228# Put ferret journal files together
229for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do
230    echo -e "\n\n################################" ;
231    echo -e "$file\n" ; cat $file ;
232done  > ${R_ATLAS}/MBG_T/allferretscript.txt
233
234for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do
235    echo -e "\n\n################################" ;
236    echo -e "$file\n" ; cat $file ;
237done  > ${R_ATLAS}/MBG_F/allferretscript.txt
238# Clear some files
239find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
240
241# Save files
242IGCM_sys_Put_Dir ATLAS ${R_FIGR}
243
244IGCM_sys_Rm -Rf ATLAS
245IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
246IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
247
248# DODS copy
249IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
250[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
251
252# Clean RUN_DIR_PATH (necessary for cesium and titane only)
253IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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