source: trunk/libIGCM/AA_atlas_PISCES @ 706

Last change on this file since 706 was 704, checked in by jgipsl, 12 years ago

=> Added "#MSUB -Q normal" in headings for jobs at curie : When submitting a job in test queue (#MSUB -Q test) all sub jobs will also be subbmitted in test queue if nothingelse is specified.

=> Changed in AA_job : use /bin/ksh at curie due to specific usage in SPINUP configuration.

=> Correct directory in libIGCM_sys_obelix.
  • Property svn:keywords set to Revision Author Date
File size: 13.1 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_PIS        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r ATL_PIS        # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- curie #MSUB -E '--no-requeue'
19#-Q- curie #MSUB -q large
20#-Q- curie #MSUB -Q normal
21#-Q- curie set +x
22#-Q- platine #!/usr/bin/ksh
23#-Q- platine ##################
24#-Q- platine ## PLATINE   CEA ##
25#-Q- platine ##################
26#-Q- platine #BSUB -J ATL_PIS           # Nom du job
27#-Q- platine #BSUB -N                   # message a la fin du job
28#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
29#-Q- platine #BSUB -W 1:00              # Limite temps
30#-Q- platine #BSUB -q post              # Passage en queue post
31#-Q- platine #BSUB -L /bin/ksh
32#-Q- sx8brodie #!/bin/ksh
33#-Q- sx8brodie #######################
34#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
35#-Q- sx8brodie #######################
36#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
37#-Q- sx8brodie # @ wall_clock_limit = 1:00:00
38#-Q- sx8brodie # Nom du travail LoadLeveler
39#-Q- sx8brodie # @ job_name   = ATL_PIS
40#-Q- sx8brodie # Fichier de sortie standard du travail       
41#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
42#-Q- sx8brodie # Fichier de sortie d'erreur du travail
43#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
44#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
45#-Q- sx8brodie # @ notification = error
46#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
47#-Q- sx8brodie # @ queue
48#-Q- aix6 #!/bin/ksh
49#-Q- aix6 #######################
50#-Q- aix6 ##   VARGAS   IDRIS  ##
51#-Q- aix6 #######################
52#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
53#-Q- aix6 # @ wall_clock_limit = 1:00:00
54#-Q- aix6 # Nom du travail LoadLeveler
55#-Q- aix6 # @ job_name   = ATL_PIS
56#-Q- aix6 # Fichier de sortie standard du travail       
57#-Q- aix6 # @ output     = $(job_name).$(jobid)
58#-Q- aix6 # Fichier de sortie d'erreur du travail
59#-Q- aix6 # @ error      =  $(job_name).$(jobid)
60#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
61#-Q- aix6 # @ notification = error
62#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
63#-Q- aix6 # @ queue
64#-Q- ulam #!/bin/ksh
65#-Q- ulam #######################
66#-Q- ulam ##   ULAM   IDRIS  ##
67#-Q- ulam #######################
68#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
69#-Q- ulam # @ wall_clock_limit = 1:00:00
70#-Q- ulam # Nom du travail LoadLeveler
71#-Q- ulam # @ job_name   = ATL_PIS
72#-Q- ulam # Fichier de sortie standard du travail       
73#-Q- ulam # @ output     = $(job_name).$(jobid)
74#-Q- ulam # Fichier de sortie d'erreur du travail
75#-Q- ulam # @ error      =  $(job_name).$(jobid)
76#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
77#-Q- ulam # @ notification = error
78#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
79#-Q- ulam # @ queue
80#-Q- sx8mercure #!/bin/ksh
81#-Q- sx8mercure ######################
82#-Q- sx8mercure ## SX8MERCURE   CEA ##
83#-Q- sx8mercure ######################
84#-Q- sx8mercure #PBS -N  ATL_PIS             # Nom du job
85#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
86#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
87#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
88#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
89#-Q- sx8mercure #PBS -q scalaire
90#-Q- sx8mercure #PBS -r n
91#-Q- sx9mercure #!/bin/ksh
92#-Q- sx9mercure ######################
93#-Q- sx9mercure ## SX9MERCURE  CCRT ##
94#-Q- sx9mercure ######################
95#-Q- sx9mercure #PBS -N  ATL_PIS             # Nom du job
96#-Q- sx9mercure #PBS -j o                    # regroupement des stdout et stderr
97#-Q- sx9mercure #PBS -S /usr/bin/ksh         # shell de soumission
98#-Q- sx9mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
99#-Q- sx9mercure #PBS -l elapstim_req=2:00:00   # Limite temps a 2 heures
100#-Q- sx9mercure #PBS -q scalaire
101#-Q- sx9mercure #PBS -r n
102#-Q- titane #!/bin/ksh
103#-Q- titane ######################
104#-Q- titane ## TITANE   CEA ##
105#-Q- titane ######################
106#-Q- titane #MSUB -r ATL_PIS        # Nom du job
107#-Q- titane #MSUB -eo
108#-Q- titane #MSUB -n 1              # Reservation du processus
109#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
110#-Q- titane #MSUB -q mono
111#-Q- titane #MSUB -E '-rn'
112#-Q- default #!/bin/ksh
113#-Q- default ##################
114#-Q- default ## DEFAULT HOST ##
115#-Q- default ##################
116
117#**************************************************************
118# Author: Christian Ethe
119# Contact: Christian.Ethe__at__ipsl.jussieu.fr
120# $Revision::                                          $ Revision of last commit
121# $Author::                                            $ Author of last commit
122# $Date::                                              $ Date of last commit
123# IPSL (2006)
124#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
125#
126#**************************************************************
127
128#set -eu
129#set -vx
130
131date
132
133#-Q- sx8brodie export OMP_NUM_THREADS=1
134#-Q- aix6 export OMP_NUM_THREADS=1
135#-Q- ulam export OMP_NUM_THREADS=1
136
137########################################################################
138
139. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
140      ( ${DEBUG_debug} ) && IGCM_debug_Check
141. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
142     ( ${DEBUG_debug} ) && IGCM_card_Check
143. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
144     ( ${DEBUG_debug} ) && IGCM_date_Check
145#-------
146. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
147
148########################################################################
149
150#set -vx
151
152IGCM_sys_MkdirWork ${RUN_DIR_PATH}
153IGCM_sys_Cd ${RUN_DIR_PATH}
154
155# ------------------------------------------------------------------
156# Test if all was right before proceeding further
157# ------------------------------------------------------------------
158IGCM_debug_Verif_Exit_Post
159
160if [ ${StandAlone} = true ] ; then
161    CARD_DIR=${SUBMIT_DIR}
162else
163    CARD_DIR=${RUN_DIR_PATH}
164    IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH}
165    IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card    ${RUN_DIR_PATH}
166    IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP        ${RUN_DIR_PATH}
167    IGCM_sys_Get_Master ${SUBMIT_DIR}/POST        ${RUN_DIR_PATH}
168fi
169#
170# First of all
171#
172IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
173typeset option
174for option in ${config_UserChoices[*]} ; do
175    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
176done
177
178IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card Ensemble
179typeset option
180for option in ${config_Ensemble[*]} ; do
181    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Ensemble ${option}
182done
183#
184echo
185IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
186IGCM_debug_PrintVariables 3 config_UserChoices_JobName
187IGCM_debug_PrintVariables 3 config_UserChoices_LongName
188IGCM_debug_PrintVariables 3 config_UserChoices_TagName
189IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
190IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
191IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
192IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
193IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
194IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
195IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleName
196IGCM_debug_PrintVariables 3 config_Ensemble_EnsembleDate
197echo
198
199#==================================
200#R_SAVE : Job output directory
201#R_BUFR : Job output buffered directory
202if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
203  FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
204  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
205    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
206    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
207    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
208    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${FreeName}
209  else
210    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
211    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
212    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
213    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
214  fi
215else
216  if ( [ ! X${config_Ensemble_EnsembleName} = X ] && [ ! X${config_Ensemble_EnsembleDate} = X ] ) ; then
217    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
218    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
219    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
220    R_DODS=${config_UserChoices_TagName}/${config_Ensemble_EnsembleName}/${config_Ensemble_EnsembleDate}/${config_UserChoices_JobName}
221  else
222    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
223    R_FIGR=${R_FIG}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
224    R_BUFR=${R_BUF}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
225    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
226  fi
227fi
228#
229IGCM_sys_MkdirArchive ${R_FIGR}
230
231R_ATLAS=ATLAS/SE_${YEARS}
232R_OUT_MBG=${R_SAVE}/MBG
233DIR_OUT=${DIR_OUT:=SE}
234
235RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS}
236IGCM_sys_MkdirWork ${RUN_DIR}
237IGCM_sys_Cd ${RUN_DIR}
238
239# --------------------------------------------
240# Insert your commands between III...III lines
241# and precise produced directories to save
242# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
243
244IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR}
245IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR}
246
247atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \
248                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
249atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg  \
250                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
251
252# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
253
254# Put ferret journal files together
255for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do
256    echo -e "\n\n################################" ;
257    echo -e "$file\n" ; cat $file ;
258done  > ${R_ATLAS}/MBG_T/allferretscript.txt
259
260for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do
261    echo -e "\n\n################################" ;
262    echo -e "$file\n" ; cat $file ;
263done  > ${R_ATLAS}/MBG_F/allferretscript.txt
264# Clear some files
265find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
266
267# Save files
268IGCM_sys_Put_Dir ATLAS ${R_FIGR}
269
270IGCM_sys_Rm -Rf ATLAS
271IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
272IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
273
274# DODS copy
275IGCM_sys_TestDirArchive ${R_FIGR}/${R_ATLAS}
276[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
277
278# Clean RUN_DIR_PATH (necessary for cesium and titane only)
279IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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