[373] | 1 | #!/bin/ksh |
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| 2 | #************************************************************** |
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| 3 | # Author: Martial Mancip |
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[403] | 4 | # Contact: Martial.Mancip__at__ipsl.jussieu.fr |
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[373] | 5 | # $Revision:: $ Revision of last commit |
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| 6 | # $Author:: $ Author of last commit |
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| 7 | # $Date:: $ Date of last commit |
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[225] | 8 | # IPSL (2006) |
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| 9 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 10 | # |
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| 11 | #************************************************************** |
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[1330] | 12 | # ID of your genci project. Curie only : post-processing jobs need it to run properly |
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| 13 | #-Q- curie export BRIDGE_MSUB_PROJECT=::default_project:: |
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[1437] | 14 | #-Q- irene export BRIDGE_MSUB_PROJECT=::default_project:: |
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[1525] | 15 | #-Q- irene-amd export BRIDGE_MSUB_PROJECT=::default_project:: |
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[225] | 16 | |
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| 17 | #set -eu |
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| 18 | #set -vx |
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| 19 | |
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| 20 | libIGCM=::modipsl::/libIGCM |
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| 21 | |
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[1356] | 22 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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[712] | 23 | TaskType=post-processing |
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| 24 | |
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[225] | 25 | #D--------------------------------------------------------------------== |
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| 26 | #D- -1. User modification place |
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| 27 | #D--------------------------------------------------------------------== |
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| 28 | |
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| 29 | #D- Increased verbosity (1, 2, 3) |
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| 30 | Verbosity=3 |
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| 31 | |
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| 32 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 33 | #D- Default=true |
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| 34 | DEBUG_debug=false |
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| 35 | |
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| 36 | #D--------------------------------------------------------------------== |
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[1575] | 37 | echo "" |
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| 38 | echo "clean_or_continue.job " |
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[1583] | 39 | |
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| 40 | # Read arguments |
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| 41 | print_help=no |
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| 42 | force_rm=no |
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| 43 | while (($# > 0)) ; do |
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| 44 | case $1 in |
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| 45 | "-h") |
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| 46 | print_help=yes ; shift ;; |
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| 47 | |
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| 48 | "-f") |
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| 49 | force_rm=yes ; shift ;; |
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| 50 | *) |
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| 51 | echo "Unknown option "$1" . Use -h for help." |
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| 52 | exit |
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| 53 | esac |
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| 54 | done |
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| 55 | |
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| 56 | |
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| 57 | if [ $print_help == yes ] ; then |
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[1575] | 58 | # Print help and exit |
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| 59 | echo "" |
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| 60 | echo "The script is called from in the your experiment directory, the so-called SUBMIT_DIR, in the following way" |
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[1583] | 61 | echo "../../../libIGCM/clean_or_continue.job : normal execution, you'll be asked before files are deleted" |
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| 62 | echo "../../../libIGCM/clean_or_continue.job -f : force normal execution to delete files without asking" |
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| 63 | echo "../../../libIGCM/clean_or_continue.job -h : print following information" |
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[1575] | 64 | echo "" |
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| 65 | echo "This script can be used for 3 cases:" |
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| 66 | echo "1- The simulation crashed and you have PeriodState=Fatal in run.card." |
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| 67 | echo "For this case, all output from the current PeriodLength set in run.card will be deleted. " |
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| 68 | echo "You need to answer yes to the questions." |
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| 69 | echo "" |
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| 70 | echo "2- The simulation stopped due to an exceeded time limit, PeriodState=Running in run.card". |
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| 71 | echo "As for case 1, all output from the current PeriodLength will be deleted and you should answer yes to questions". |
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| 72 | echo "" |
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| 73 | echo "3- The simulation is completed but you want to continue it, PeriodState=Completed in run.card." |
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| 74 | echo "For this case, you just need to change DateEnd in config.card and launch this script." |
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| 75 | echo "" |
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| 76 | echo "For all cases, the run.card is changed as needed and the number for the current period is set in the main Job_ for the Script_Output_ file" |
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| 77 | echo "" |
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| 78 | echo "This script needs to delete files to work correctly. Therefore you should answer yes to the questions." |
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| 79 | echo "" |
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[225] | 80 | |
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[1575] | 81 | exit |
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| 82 | fi |
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[225] | 83 | |
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[1583] | 84 | if [ $force_rm == yes ] ; then |
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| 85 | echo "" |
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| 86 | echo "Option -f to delete files without asking is set" |
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| 87 | else |
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| 88 | echo "" |
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| 89 | echo "This script needs to delete files to work correctly. Therefore you should answer yes to the questions." |
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| 90 | echo "Use ../../../libIGCM/clean_or_contine.job -h for more information" |
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| 91 | echo "" |
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| 92 | fi |
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| 93 | |
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[225] | 94 | #D--------------------------------------------------------------------== |
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| 95 | |
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| 96 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 97 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 98 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 99 | #------- |
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[428] | 100 | SUBMIT_DIR=$( pwd ) |
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[225] | 101 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 102 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[832] | 103 | #------- |
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| 104 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 105 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 106 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[225] | 107 | |
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| 108 | #================================== |
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[727] | 109 | # First of all |
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| 110 | # |
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| 111 | # Read libIGCM compatibility version in config.card |
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| 112 | # Read UserChoices section |
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| 113 | # Read Ensemble section |
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| 114 | # Read Post section |
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| 115 | # Define all netcdf output directories |
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| 116 | #================================== |
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| 117 | IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card |
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[225] | 118 | |
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[634] | 119 | #================================== |
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| 120 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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| 121 | if [ X${PackDefault} = Xtrue ] ; then |
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| 122 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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| 123 | else |
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| 124 | config_Post_PackFrequency=NONE |
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| 125 | fi |
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| 126 | |
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| 127 | #================================== |
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[906] | 128 | # Is the pack active |
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[634] | 129 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
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| 130 | Pack=true |
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| 131 | fi |
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| 132 | |
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[225] | 133 | IGCM_sys_TestDirArchive ${R_SAVE} |
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| 134 | [ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive" |
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| 135 | |
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[906] | 136 | if [ ! -f ${SUBMIT_DIR}/run.card ]; then |
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[785] | 137 | echo "You seem NOT to have a run.card in this directory !!" |
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| 138 | echo "This script will fail because it doesn't know what to do without run.card available." |
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| 139 | exit 1 |
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[225] | 140 | else |
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[785] | 141 | #===================================# |
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| 142 | # Read updated run.card # |
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| 143 | #===================================# |
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| 144 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState |
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| 145 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin |
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| 146 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd |
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| 147 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod |
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[225] | 148 | |
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[1185] | 149 | # |
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| 150 | if [ X${run_Configuration_CumulPeriod} = X ] ; then |
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[1583] | 151 | if [ $force_rm == yes ] ; then |
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[1618] | 152 | echo -e "\033[1;32mCumulPeriod is empty so run.card will be deleted to start properly. \033[m" |
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[1583] | 153 | reponse=yes |
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| 154 | else |
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| 155 | echo -e "\033[1;32mCumulPeriod is empty so we want to erase run.card to start properly. Do you want that?" |
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| 156 | echo -n -e " Your answer (y/n) : \033[m" |
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| 157 | read reponse |
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| 158 | fi |
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[1185] | 159 | case ${reponse} in |
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| 160 | |
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| 161 | oui|OUI|o|y|yes|YES) |
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[1583] | 162 | echo "Now you can submit the Job : ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}" |
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[1185] | 163 | IGCM_sys_Rm ${SUBMIT_DIR}/run.card |
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| 164 | ;; |
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| 165 | non|NON|n|no|NO) |
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| 166 | echo "Nothing to do !" |
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| 167 | ;; |
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| 168 | esac |
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| 169 | exit 0 |
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| 170 | fi |
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| 171 | |
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[785] | 172 | PeriodDateEnd=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateEnd} ) |
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| 173 | echo "Search files with ${PeriodDateEnd} in ${R_SAVE}" |
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| 174 | set +A ListFiles -- $( IGCM_sys_RshArchive "find ${R_SAVE} -name \"*${PeriodDateEnd}*\" " ) |
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| 175 | CountListFiles=${#ListFiles[@]} |
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[225] | 176 | |
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[785] | 177 | if [ X${Pack} = Xtrue ] ; then |
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| 178 | echo "Search files with ${PeriodDateEnd} in ${R_BUFR}" |
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| 179 | set +A ListFilesBuf -- $( IGCM_sys_RshMaster "find ${R_BUFR} -name \"*${PeriodDateEnd}*\" " ) |
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| 180 | CountListFilesBuf=${#ListFilesBuf[@]} |
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| 181 | else |
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| 182 | CountListFilesBuf=0 |
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| 183 | fi |
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| 184 | |
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| 185 | # If exist, erase REBUILD DIR |
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| 186 | PeriodDateBegin=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateBegin} ) |
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| 187 | CountRebuildDir=0 |
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| 188 | if [ X${config_Post_RebuildFrequency} != X ] ; then |
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[1031] | 189 | set +A RebuildDir -- $( find ${REBUILD_DIR} -type d -name "*${PeriodDateBegin}*" ) |
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[785] | 190 | CountRebuildDir=${#RebuildDir[@]} |
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| 191 | fi |
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[545] | 192 | |
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[785] | 193 | IGCM_debug_Print 1 "Number of files to be erased : ${CountListFiles}." |
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[906] | 194 | if ( [ ${CountListFiles} -gt 0 ] || [ ${CountListFilesBuf} -gt 0 ] ) ; then |
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[785] | 195 | for file in ${ListFiles[@]} ; do |
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| 196 | IGCM_debug_Print 2 -e "\033[1;31m ${file}\033[m" |
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| 197 | done |
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| 198 | if [ X${Pack} = Xtrue ] ; then |
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| 199 | for file in ${ListFilesBuf[@]} ; do |
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| 200 | IGCM_debug_Print 2 -e "\033[1;31m ${file}\033[m" |
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| 201 | done |
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[403] | 202 | fi |
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[1583] | 203 | if [ $force_rm == yes ] ; then |
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| 204 | reponse=y |
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| 205 | else |
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| 206 | echo -e "\033[1;32mDo you REALLY want to erase all those files ?" |
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| 207 | echo -n -e " Your answer (y/n) : \033[m" |
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| 208 | read reponse |
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| 209 | fi |
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[785] | 210 | case ${reponse} in |
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[403] | 211 | |
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[785] | 212 | oui|OUI|o|y|yes|YES) |
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[1583] | 213 | echo "The files will be erased." |
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[785] | 214 | IGCM_sys_RshArchive "find ${R_SAVE} -name \"*${PeriodDateEnd}*\" -exec rm -f '{}' \;" |
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[634] | 215 | if [ X${Pack} = Xtrue ] ; then |
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[785] | 216 | IGCM_sys_RshMaster "find ${R_BUFR} -name \"*${PeriodDateEnd}*\" -exec rm -f '{}' \;" |
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[634] | 217 | fi |
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[785] | 218 | echo "done." |
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| 219 | ;; |
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| 220 | non|NON|n|no|NO) |
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| 221 | echo "Nothing to do !" |
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| 222 | ;; |
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| 223 | esac |
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| 224 | fi |
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[403] | 225 | |
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[906] | 226 | if [ ${CountRebuildDir} -gt 0 ] ; then |
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[785] | 227 | IGCM_debug_Print 1 "Number of REBUILD Dirs to be erased : ${CountRebuildDir}." |
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| 228 | for Dir in ${RebuildDir[@]} ; do |
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| 229 | IGCM_debug_Print 2 -e "\033[1;31m ${Dir}\033[m" |
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| 230 | done |
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[403] | 231 | |
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[1583] | 232 | if [ $force_rm == yes ] ; then |
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| 233 | reponse=y |
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| 234 | else |
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| 235 | echo -e "\033[1;32mDo you REALLY want to erase all those Directories ?" |
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| 236 | echo -n -e " Your answer (y/n) : \033[m" |
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| 237 | read reponse |
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| 238 | fi |
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[785] | 239 | case ${reponse} in |
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[707] | 240 | |
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[785] | 241 | oui|OUI|o|y|yes|YES) |
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[1583] | 242 | echo "The files will be erased." |
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[1031] | 243 | find ${REBUILD_DIR} -type d -name "*${PeriodDateBegin}*" -exec rm -Rf '{}' \; |
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[785] | 244 | echo "done." |
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| 245 | ;; |
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| 246 | non|NON|n|no|NO) |
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| 247 | echo "Nothing to do !" |
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| 248 | ;; |
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| 249 | esac |
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| 250 | fi |
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[707] | 251 | |
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[785] | 252 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState |
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| 253 | if ( [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then |
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| 254 | |
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[1583] | 255 | if [ $force_rm == yes ] ; then |
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[1618] | 256 | echo -e "\033[1;32mPeriodState=OnQueue is set in run.card) \033[m" |
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[1583] | 257 | reponse=y |
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| 258 | else |
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| 259 | echo -e "\033[1;32mNOW do you want to continue the simulation (Set PeriodState=OnQueue into run.card) ?" |
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| 260 | echo -n -e " Your answer (y/n) : \033[m" |
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| 261 | read reponse |
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| 262 | fi |
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[785] | 263 | case ${reponse} in |
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| 264 | |
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| 265 | oui|OUI|o|y|yes|YES) |
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[1583] | 266 | echo "You can submit the Job : ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}" |
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[785] | 267 | IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "OnQueue" |
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| 268 | ;; |
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| 269 | non|NON|n|no|NO) |
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| 270 | echo "Nothing to do !" |
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| 271 | ;; |
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| 272 | esac |
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| 273 | else |
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[1583] | 274 | echo "You can submit the Job : ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}" |
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[785] | 275 | fi |
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| 276 | |
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[1185] | 277 | if [ X${run_Configuration_CumulPeriod} = X1 ] ; then |
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[1583] | 278 | if [ $force_rm == yes ] ; then |
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[1618] | 279 | echo -e "\033[1;32mCumulPeriod=1 and therfor run.card is deleted to start properly. \033[m" |
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[1583] | 280 | reponse=y |
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| 281 | else |
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| 282 | echo -e "\033[1;32mCumulPeriod=1 so we want to erase run.card to start properly. Do you want that too?" |
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| 283 | echo -n -e " Your answer (y/n) : \033[m" |
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| 284 | read reponse |
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| 285 | fi |
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[896] | 286 | case ${reponse} in |
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| 287 | |
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| 288 | oui|OUI|o|y|yes|YES) |
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[1583] | 289 | echo "You can submit the Job : ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}" |
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[896] | 290 | IGCM_sys_Rm ${SUBMIT_DIR}/run.card |
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| 291 | ;; |
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| 292 | non|NON|n|no|NO) |
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| 293 | echo "Nothing to do !" |
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| 294 | ;; |
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| 295 | esac |
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[1383] | 296 | else |
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| 297 | # if not first period |
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| 298 | Script_Output_Prefix=${config_UserChoices_Script_Output_Prefix:='Script_Output'} |
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| 299 | Script_Output_Job=${Script_Output_Prefix}_${config_UserChoices_JobName} |
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| 300 | Script_Output=${Script_Output_Prefix}_${config_UserChoices_JobName}.$( printf "%06d" ${run_Configuration_CumulPeriod} ) |
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| 301 | |
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[1583] | 302 | if [ $force_rm == yes ] ; then |
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[1618] | 303 | echo -e "\033[1;32mThe number in the jobname in Script_Output is changed.\033[m" |
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[1583] | 304 | reponse=y |
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| 305 | else |
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| 306 | echo -e "\033[1;32mDo you want to change the number in Script_Output? (${Script_Output} into Job) ?" |
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| 307 | echo -n -e " Your answer (y/n) : \033[m" |
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| 308 | read reponse |
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| 309 | fi |
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[1383] | 310 | case ${reponse} in |
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| 311 | |
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| 312 | oui|OUI|o|y|yes|YES) |
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| 313 | cp ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}_SAVED_$$ |
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| 314 | sed -e"s/${Script_Output_Job}.[0-9][0-9][0-9][0-9][0-9][0-9]/${Script_Output}/" ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}_SAVED_$$ >${SUBMIT_DIR}/Job_${config_UserChoices_JobName} |
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| 315 | echo "Job : Job_${config_UserChoices_JobName} modified." |
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| 316 | echo "Old job saved here : Job_${config_UserChoices_JobName}_SAVED_$$" |
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| 317 | ;; |
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| 318 | non|NON|n|no|NO) |
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| 319 | echo "Nothing done in Job_${config_UserChoices_JobName} !" |
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| 320 | ;; |
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| 321 | esac |
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| 322 | |
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[785] | 323 | fi |
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[225] | 324 | fi |
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| 325 | exit 0 |
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