[622] | 1 | #-Q- curie ###################### |
---|
| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
---|
| 3 | #-Q- curie ###################### |
---|
[904] | 4 | #-Q- curie #MSUB -r SE # Nom du job |
---|
[622] | 5 | #-Q- curie #MSUB -eo |
---|
| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
---|
[880] | 7 | #-Q- curie #MSUB -T 36000 # Limite de temps elapsed du job |
---|
[1154] | 8 | #-Q- curie #MSUB -q ::default_node:: |
---|
[704] | 9 | #-Q- curie #MSUB -Q normal |
---|
[837] | 10 | #-Q- curie #MSUB -A ::default_project:: |
---|
[681] | 11 | #-Q- curie set +x |
---|
[770] | 12 | #-Q- ada #!/bin/ksh |
---|
| 13 | #-Q- ada ####################### |
---|
[929] | 14 | #-Q- ada ## ADA IDRIS ## |
---|
[770] | 15 | #-Q- ada ####################### |
---|
[848] | 16 | #-Q- ada # @ job_type = serial |
---|
| 17 | #-Q- ada # @ requirements = (Feature == "prepost") |
---|
[770] | 18 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
---|
| 19 | #-Q- ada # @ wall_clock_limit = 10:00:00 |
---|
| 20 | #-Q- ada # Nom du travail LoadLeveler |
---|
| 21 | #-Q- ada # @ job_name = SE |
---|
[904] | 22 | #-Q- ada # Fichier de sortie standard du travail |
---|
[770] | 23 | #-Q- ada # @ output = $(job_name).$(jobid) |
---|
| 24 | #-Q- ada # Fichier de sortie d'erreur du travail |
---|
| 25 | #-Q- ada # @ error = $(job_name).$(jobid) |
---|
| 26 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 27 | #-Q- ada # @ notification = error |
---|
[1112] | 28 | #-Q- ada # @ environment = $DEBUG_debug ; $BigBrother ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $POST_DIR ; $Script_Post_Output ; $MASTER ; $DateBegin ; $PeriodDateEnd ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG |
---|
[770] | 29 | #-Q- ada # @ queue |
---|
[281] | 30 | #-Q- lxiv8 ###################### |
---|
| 31 | #-Q- lxiv8 ## OBELIX LSCE ## |
---|
| 32 | #-Q- lxiv8 ###################### |
---|
| 33 | #-Q- lxiv8 #PBS -N SE |
---|
| 34 | #-Q- lxiv8 #PBS -m a |
---|
| 35 | #-Q- lxiv8 #PBS -j oe |
---|
| 36 | #-Q- lxiv8 #PBS -q medium |
---|
| 37 | #-Q- lxiv8 #PBS -o SE.$$ |
---|
| 38 | #-Q- lxiv8 #PBS -S /bin/ksh |
---|
[2] | 39 | #-Q- default #!/bin/ksh |
---|
| 40 | #-Q- default ################## |
---|
| 41 | #-Q- default ## DEFAULT HOST ## |
---|
| 42 | #-Q- default ################## |
---|
| 43 | |
---|
[373] | 44 | #************************************************************** |
---|
| 45 | # Author: Sebastien Denvil |
---|
| 46 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
---|
| 47 | # $Revision:: $ Revision of last commit |
---|
| 48 | # $Author:: $ Author of last commit |
---|
| 49 | # $Date:: $ Date of last commit |
---|
[108] | 50 | # IPSL (2006) |
---|
| 51 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
---|
[373] | 52 | # |
---|
| 53 | #************************************************************** |
---|
[108] | 54 | |
---|
| 55 | #set -eu |
---|
[2] | 56 | #set -vx |
---|
| 57 | |
---|
| 58 | date |
---|
| 59 | |
---|
[770] | 60 | #-Q- ada export OMP_NUM_THREADS=1 |
---|
[2] | 61 | |
---|
[712] | 62 | #D- Task type (computing or post-processing) |
---|
| 63 | TaskType=post-processing |
---|
| 64 | |
---|
[2] | 65 | ######################################################################## |
---|
| 66 | |
---|
| 67 | #D- Flag to determine if this job in a standalone mode |
---|
| 68 | #D- Default : value from AA_job if any |
---|
| 69 | StandAlone=${StandAlone:=true} |
---|
| 70 | |
---|
[554] | 71 | #D- Path to libIGCM |
---|
[206] | 72 | #D- Default : value from AA_job if any |
---|
[229] | 73 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
---|
[206] | 74 | |
---|
[213] | 75 | #D- Flag to determine if rebuild process has been performed asynchronously |
---|
[904] | 76 | #D- Possible value true or false. |
---|
[213] | 77 | #D- If true raw files has allready been patched by rebuild job |
---|
| 78 | #D- If false create_ts will patch the raw files |
---|
| 79 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
---|
| 80 | RebuildFrequency=${RebuildFrequency:=true} |
---|
| 81 | |
---|
[2] | 82 | #D- Flag to determine atlas job's output directory |
---|
| 83 | #D- Default : value from libIGCM_post.ksh if any |
---|
[370] | 84 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
---|
[2] | 85 | |
---|
| 86 | #D- Increased verbosity (1, 2, 3) |
---|
| 87 | #D- Default : value from AA_job if any |
---|
| 88 | Verbosity=${Verbosity:=3} |
---|
| 89 | |
---|
| 90 | #D- Low level debug : to bypass lib test checks and stack construction |
---|
| 91 | #D- Default : value from AA_job if any |
---|
| 92 | DEBUG_debug=${DEBUG_debug:=false} |
---|
| 93 | |
---|
| 94 | #D- TEMPORARY Flag to determine atmospheric resolution |
---|
| 95 | #D- Default : value from atmospheric driver if any |
---|
[135] | 96 | RESOL_ATM=${RESOL_ATM:=ALL} |
---|
[2] | 97 | |
---|
[257] | 98 | #D- Flag to determine surface resolution |
---|
| 99 | #D- Default : value from surface driver if any |
---|
| 100 | RESOL_SRF=ALL |
---|
| 101 | |
---|
| 102 | #D- Flag to determine surface resolution |
---|
| 103 | #D- Default : value from surface driver if any |
---|
| 104 | RESOL_SBG=ALL |
---|
| 105 | |
---|
[2] | 106 | #D- TEMPORARY Flag to determine ocean resolution |
---|
| 107 | #D- Default : value from ocean driver if any |
---|
| 108 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
---|
| 109 | |
---|
| 110 | #D- TEMPORARY Flag to determine ice resolution |
---|
| 111 | #D- Default : value from ice driver if any |
---|
| 112 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
---|
| 113 | |
---|
[178] | 114 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
---|
| 115 | #D- Default : value from ice driver if any |
---|
| 116 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
---|
| 117 | |
---|
[2] | 118 | ######################################################################## |
---|
| 119 | |
---|
[108] | 120 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 121 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 122 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
| 123 | #------- |
---|
| 124 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
[731] | 125 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
---|
[832] | 126 | #------- |
---|
| 127 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
---|
| 128 | ( ${DEBUG_debug} ) && IGCM_card_Check |
---|
| 129 | ( ${DEBUG_debug} ) && IGCM_date_Check |
---|
[2] | 130 | |
---|
| 131 | ######################################################################## |
---|
| 132 | |
---|
| 133 | #set -vx |
---|
| 134 | |
---|
[202] | 135 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
---|
[2] | 136 | IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
| 137 | |
---|
[436] | 138 | # ------------------------------------------------------------------ |
---|
| 139 | # Test if all was right before proceeding further |
---|
| 140 | # ------------------------------------------------------------------ |
---|
| 141 | IGCM_debug_Verif_Exit_Post |
---|
| 142 | |
---|
[2] | 143 | if [ ${StandAlone} = true ] ; then |
---|
| 144 | CARD_DIR=${SUBMIT_DIR} |
---|
| 145 | else |
---|
[647] | 146 | CARD_DIR=${RUN_DIR_PATH} |
---|
[640] | 147 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
---|
| 148 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
---|
| 149 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
---|
| 150 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
---|
[2] | 151 | fi |
---|
| 152 | |
---|
[616] | 153 | #================================== |
---|
[2] | 154 | # First of all |
---|
| 155 | # |
---|
[727] | 156 | # Read libIGCM compatibility version in config.card |
---|
| 157 | # Read UserChoices section |
---|
| 158 | # Read Ensemble section |
---|
| 159 | # Read Post section |
---|
| 160 | # Define all netcdf output directories |
---|
[616] | 161 | #================================== |
---|
[727] | 162 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
---|
[616] | 163 | |
---|
| 164 | #================================== |
---|
[633] | 165 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
---|
| 166 | if [ X${PackDefault} = Xtrue ] ; then |
---|
| 167 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
---|
| 168 | else |
---|
| 169 | config_Post_PackFrequency=NONE |
---|
| 170 | fi |
---|
[616] | 171 | |
---|
| 172 | #================================== |
---|
| 173 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
---|
| 174 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
---|
| 175 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
---|
| 176 | fi |
---|
| 177 | |
---|
| 178 | #================================== |
---|
[727] | 179 | # Read ListOfComponents section: |
---|
[2] | 180 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
---|
[727] | 181 | |
---|
| 182 | #================================== |
---|
| 183 | # Read SeasonalFrequency: |
---|
[2] | 184 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
---|
[727] | 185 | |
---|
[2] | 186 | # |
---|
| 187 | # Determine period for seasonnal average. Default : value from AA_job if any |
---|
| 188 | # |
---|
| 189 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
---|
| 190 | # |
---|
| 191 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
---|
| 192 | # |
---|
| 193 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
---|
| 194 | # |
---|
[149] | 195 | an_fin=$(( $( IGCM_date_ConvertGregorianDateToJulian ${PeriodDateEnd} ) / 1000 )) |
---|
[2] | 196 | an_deb=$( IGCM_date_YearDigit $(( an_fin - freq + 1 )) ) |
---|
| 197 | an_fin=$( IGCM_date_YearDigit ${an_fin} ) |
---|
| 198 | # |
---|
| 199 | # For each component selected determine which files need post-processing |
---|
| 200 | # |
---|
| 201 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 202 | # |
---|
| 203 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
---|
| 204 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 205 | # |
---|
| 206 | card=${CARD_DIR}/COMP/${compname}.card |
---|
| 207 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 208 | # |
---|
| 209 | ListFilesName=${compname}_OutputFiles_List |
---|
| 210 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 211 | # |
---|
| 212 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
[2] | 213 | # |
---|
[785] | 214 | # INITIALISATION |
---|
[2] | 215 | # |
---|
[785] | 216 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 217 | typeset i=2 |
---|
[2] | 218 | # |
---|
[785] | 219 | until [ $i -gt $NbFiles ]; do |
---|
| 220 | # |
---|
| 221 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 222 | # |
---|
| 223 | if [ X${flag_post} != XNONE ] ; then |
---|
| 224 | # |
---|
| 225 | # Check if seasonal is required for this file |
---|
| 226 | # |
---|
| 227 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
---|
| 228 | # |
---|
| 229 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
---|
| 230 | # |
---|
| 231 | # variable option allready typeset above |
---|
| 232 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
---|
| 233 | if [ ${option} = Seasonal ] ; then |
---|
| 234 | FoundSeasonal=true |
---|
| 235 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
---|
| 236 | fi |
---|
| 237 | done |
---|
| 238 | # |
---|
| 239 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
---|
| 240 | eval ${compname}_${flag_post}_Seasonal=ON |
---|
| 241 | fi |
---|
| 242 | # |
---|
| 243 | if [ ! X$( eval echo \${${compname}_${flag_post}_Seasonal} ) = XON ] ; then |
---|
| 244 | (( i=i+3 )) |
---|
| 245 | continue |
---|
| 246 | fi |
---|
| 247 | # |
---|
| 248 | # CREATE LIST |
---|
| 249 | # |
---|
| 250 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
---|
| 251 | # |
---|
| 252 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
---|
| 253 | # |
---|
| 254 | TestedFile=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${FILE}.nc |
---|
| 255 | # |
---|
| 256 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
---|
| 257 | if [ ! $? = 0 ] ; then |
---|
| 258 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
---|
| 259 | if [ ! ${RebuildFrequency} = true ] ; then |
---|
| 260 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
---|
| 261 | eval set +A LISTE_PATCHES_${FILE} \$\{${compname}_Post_${FILE}_Patches[*]} |
---|
| 262 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
---|
| 263 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
---|
| 264 | if [ Xload${Patch} != X ] ; then |
---|
| 265 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
---|
| 266 | eval load${Patch}=loaded |
---|
| 267 | fi |
---|
| 268 | done |
---|
| 269 | fi |
---|
| 270 | fi |
---|
| 271 | fi |
---|
| 272 | fi |
---|
| 273 | (( i=i+3 )) |
---|
| 274 | done # until [ $i -eq $NbFiles ] |
---|
| 275 | fi |
---|
[150] | 276 | done # for comp |
---|
[2] | 277 | |
---|
| 278 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 279 | # |
---|
| 280 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 281 | # |
---|
| 282 | i=0 |
---|
| 283 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
[2] | 284 | # |
---|
[785] | 285 | # Determine in which output can we find file |
---|
| 286 | # IE : Output/MO or Output/DA or ... |
---|
[2] | 287 | # |
---|
[785] | 288 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 289 | case ${FlagDir} in |
---|
| 290 | 1Y) FreqDir=YE ;; |
---|
| 291 | 1M) FreqDir=MO ;; |
---|
| 292 | 5D|1D) FreqDir=DA ;; |
---|
| 293 | HF) FreqDir=HF ;; |
---|
| 294 | 3H) FreqDir=HF ;; |
---|
| 295 | INS) FreqDir=INS ;; |
---|
| 296 | esac |
---|
| 297 | # |
---|
| 298 | RESULT_SE=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${file}.nc |
---|
| 299 | # Do not redoo an existing SE |
---|
| 300 | IGCM_sys_TestFileArchive ${R_SAVE}/${comp}/Analyse/SE/${RESULT_SE} |
---|
| 301 | if [ $? = 0 ] ; then |
---|
| 302 | continue |
---|
| 303 | fi |
---|
| 304 | # |
---|
| 305 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
| 306 | # |
---|
| 307 | case ${config_UserChoices_PeriodLength} in |
---|
| 308 | # For Yearly simulation : |
---|
[904] | 309 | *Y|*y) |
---|
| 310 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | sed -e 's/[yY]//' ) |
---|
[785] | 311 | (( an = an_deb )) |
---|
| 312 | # Initialize array |
---|
| 313 | unset liste_file_se |
---|
| 314 | unset liste_file_se_tmp |
---|
| 315 | while [ ${an} -le ${an_fin} ] ; do |
---|
| 316 | # |
---|
| 317 | an4=$(printf "%04i\n" ${an} ) |
---|
| 318 | # |
---|
[905] | 319 | diy=$( IGCM_date_DaysInCurrentPeriod ${an4}0101 ${config_UserChoices_PeriodLength} ) |
---|
| 320 | afin=$( IGCM_date_AddDaysToGregorianDate ${an4}0101 $(( diy - 1 )) ) |
---|
[904] | 321 | # |
---|
[785] | 322 | date=${an4}0101_${afin} |
---|
[905] | 323 | # |
---|
[785] | 324 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
---|
| 325 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
---|
[904] | 326 | (( an = an + ${PeriodLengthInYears} )) |
---|
[785] | 327 | done |
---|
| 328 | # |
---|
| 329 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
---|
| 330 | IGCM_debug_Verif_Exit_Post |
---|
| 331 | |
---|
| 332 | # Apply IGCM_Patch if needed |
---|
| 333 | if [ ! ${RebuildFrequency} = true ] ; then |
---|
| 334 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 335 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
---|
| 336 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 337 | IGCM_${Patch} ${file_t} |
---|
| 338 | done |
---|
| 339 | done |
---|
| 340 | fi |
---|
| 341 | fi |
---|
| 342 | |
---|
| 343 | # Search of common list of variables to be treated |
---|
| 344 | nbfile=0 |
---|
| 345 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
---|
| 346 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
---|
| 347 | (( nbfile = nbfile + 1 )) |
---|
| 348 | done |
---|
| 349 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 350 | IGCM_sys_Rm tmpfile_ncra |
---|
| 351 | |
---|
| 352 | # detect time counter : time or time_counter ie unlimited variable |
---|
[951] | 353 | var_unlim=$(ncdump -h ${liste_file_se_tmp[0]}|grep UNLIMITED|awk '{print $1}') |
---|
[785] | 354 | |
---|
| 355 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
---|
| 356 | # |
---|
| 357 | (( nb = ${mois} - 1 )) |
---|
| 358 | # |
---|
| 359 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
---|
| 360 | IGCM_sys_ncra -O -v ${list_var_final_ncra} -d ${var_unlim},${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
---|
| 361 | done |
---|
| 362 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
---|
| 363 | ;; |
---|
| 364 | # For Monthly simulation : |
---|
| 365 | 1M|1m) |
---|
| 366 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
---|
| 367 | # |
---|
| 368 | (( nb = ${mois} - 1 )) |
---|
| 369 | # |
---|
| 370 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
---|
| 371 | # |
---|
| 372 | (( an = an_deb )) |
---|
[2] | 373 | # Initialize array |
---|
[785] | 374 | unset liste_file_se |
---|
| 375 | unset liste_file_se_tmp |
---|
| 376 | while [ ${an} -le ${an_fin} ] ; do |
---|
| 377 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
---|
| 378 | # |
---|
| 379 | an4=$(printf "%04i\n" ${an} ) |
---|
| 380 | # |
---|
| 381 | date=${an4}${mois}01_${an4}${mois}${moisL} |
---|
[905] | 382 | # |
---|
[785] | 383 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
---|
| 384 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
---|
[2] | 385 | |
---|
[785] | 386 | (( an = an + 1 )) |
---|
| 387 | done |
---|
| 388 | # |
---|
| 389 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
---|
| 390 | IGCM_debug_Verif_Exit_Post |
---|
[370] | 391 | |
---|
[785] | 392 | # Apply IGCM_Patch if needed |
---|
| 393 | if [ ! ${RebuildFrequency} = true ] ; then |
---|
| 394 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 395 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
---|
| 396 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 397 | IGCM_${Patch} ${file_t} |
---|
| 398 | done |
---|
| 399 | done |
---|
| 400 | fi |
---|
| 401 | fi |
---|
[66] | 402 | |
---|
[785] | 403 | # Search of common list of variables to be treated |
---|
| 404 | nbfile=0 |
---|
| 405 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
---|
| 406 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
---|
| 407 | (( nbfile = nbfile + 1 )) |
---|
| 408 | done |
---|
| 409 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 410 | IGCM_sys_Rm tmpfile_ncra |
---|
[370] | 411 | |
---|
[785] | 412 | IGCM_sys_ncra -O -v ${list_var_final_ncra} ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
---|
[231] | 413 | |
---|
[785] | 414 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
---|
| 415 | done |
---|
| 416 | ;; |
---|
| 417 | *D|*d) |
---|
| 418 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
---|
| 419 | # |
---|
| 420 | (( nb = ${mois} - 1 )) |
---|
| 421 | # |
---|
| 422 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
---|
| 423 | # |
---|
| 424 | (( an = an_deb )) |
---|
| 425 | # Initialize array |
---|
| 426 | unset liste_file_se |
---|
| 427 | unset liste_file_se_tmp |
---|
| 428 | while [ ${an} -le ${an_fin} ] ; do |
---|
| 429 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
---|
| 430 | # |
---|
| 431 | an4=$(printf "%04i\n" ${an} ) |
---|
| 432 | # |
---|
| 433 | length_d=$(( ${config_UserChoices_PeriodLength} - 1 )) |
---|
| 434 | # for one day |
---|
| 435 | if [ ${length_d} -eq 1 ] ; then |
---|
| 436 | (( length_d = 0 )) |
---|
| 437 | fi |
---|
| 438 | (( day = 1 )) |
---|
| 439 | while [ ${day} -le ${moisL} ] ; do |
---|
| 440 | day2=$(printf "%02i\n" ${day} ) |
---|
| 441 | day_beg=${an4}${mois}${day2} |
---|
| 442 | day_end=$( IGCM_date_AddDaysToGregorianDate ${day_beg} ${length_d} ) |
---|
| 443 | date=${an4}${mois}${day_beg}_${an4}${mois}${day_end} |
---|
[905] | 444 | # |
---|
[785] | 445 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
---|
| 446 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
---|
| 447 | (( day = day + 1 )) |
---|
| 448 | done |
---|
| 449 | (( an = an + 1 )) |
---|
| 450 | done |
---|
| 451 | # |
---|
| 452 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
---|
| 453 | IGCM_debug_Verif_Exit_Post |
---|
[2] | 454 | |
---|
[785] | 455 | # Apply IGCM_Patch if needed |
---|
| 456 | if [ ! ${RebuildFrequency} = true ] ; then |
---|
| 457 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 458 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
---|
| 459 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 460 | IGCM_${Patch} ${file_t} |
---|
| 461 | done |
---|
| 462 | done |
---|
| 463 | fi |
---|
| 464 | fi |
---|
[231] | 465 | |
---|
[785] | 466 | # Search of common list of variables to be treated |
---|
| 467 | nbfile=0 |
---|
| 468 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
---|
| 469 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
---|
| 470 | (( nbfile = nbfile + 1 )) |
---|
| 471 | done |
---|
| 472 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 473 | IGCM_sys_Rm tmpfile_ncra |
---|
[231] | 474 | |
---|
[785] | 475 | IGCM_sys_ncra -O -v ${list_var_final_ncra} ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
---|
| 476 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
---|
[231] | 477 | done |
---|
[785] | 478 | ;; |
---|
| 479 | esac |
---|
| 480 | # |
---|
[231] | 481 | |
---|
[785] | 482 | # Search of common list of variables to be treated |
---|
| 483 | nbfile=0 |
---|
| 484 | for file_common_var in ${OUT_SE[*]} ; do |
---|
| 485 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncrcat |
---|
| 486 | (( nbfile = nbfile + 1 )) |
---|
| 487 | done |
---|
| 488 | list_var_final_ncrcat=`cat tmpfile_ncrcat | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 489 | IGCM_sys_Rm tmpfile_ncrcat |
---|
[370] | 490 | |
---|
[785] | 491 | IGCM_sys_ncrcat -O -v ${list_var_final_ncrcat} ${OUT_SE[*]} ${RESULT_SE} |
---|
| 492 | # |
---|
| 493 | IGCM_sys_Rm ${OUT_SE[*]} |
---|
| 494 | # |
---|
| 495 | # detect time counter : time or time_counter ie unlimited variable |
---|
| 496 | var_unlim=$(ncdump -h ${RESULT_SE}|grep UNLIMITED| cut -d ' ' -f 1) |
---|
| 497 | |
---|
[904] | 498 | # Put correct climatological axis following calendar |
---|
[785] | 499 | case ${config_UserChoices_CalendarType} in |
---|
| 500 | 360d|360_day) |
---|
| 501 | # 360 days |
---|
| 502 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15, 45, 75, 105, 135, 165, 195, 225, 255, 285, 315, 345.} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 30, 30, 60, 60, 90, 90, 120, 120, 150, 150, 180, 180, 210, 210, 240, 240, 270, 270, 300, 300, 330, 330, 360.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"360_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 503 | ;; |
---|
| 504 | noleap|365_day) |
---|
| 505 | # 365 days |
---|
| 506 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45, 74.5, 105, 135.5, 166, 196.5, 227.5, 258, 288.5, 319, 349.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59, 59, 90, 90, 120, 120, 151, 151, 181, 181, 212, 212, 243, 243, 273, 273, 304, 304, 334, 334, 365.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"365_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 507 | ;; |
---|
| 508 | all_leap|366_day) |
---|
| 509 | # 366 days |
---|
| 510 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.5, 75.5, 106, 136.5, 167, 197.5, 228.5, 259, 289.5, 320, 350.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 60, 60, 91, 91, 121, 121, 152, 152, 182, 182, 213, 213, 244, 244, 274, 274, 305, 305, 335, 335, 366.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"366_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 511 | ;; |
---|
| 512 | leap|gregorian|standard) |
---|
| 513 | # 365.2425 days |
---|
| 514 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.12125, 74.7425, 105.2425, 135.7425, 166.2425, 196.7425, 227.7425, 258.2425, 288.7425, 319.2425, 349.7425} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59.2425, 59.2425, 90.2425, 90.2425, 120.2425, 120.2425, 151.2425, 151.2425, 181.2425, 181.2425, 212.2425, 212.2425, 243.2425, 243.2425, 273.2425, 273.2425, 304.2425, 304.2425, 334.2425, 334.2425, 365.2425} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"gregorian\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 515 | ;; |
---|
| 516 | esac |
---|
| 517 | eval IGCM_sys_ncap2 -Oh -s $ncap2cmd ${RESULT_SE} tmp.nc |
---|
| 518 | IGCM_sys_Rm ${RESULT_SE} |
---|
| 519 | IGCM_sys_Mv tmp.nc ${RESULT_SE} |
---|
| 520 | # |
---|
| 521 | eval IGCM_sys_Put_Out ${RESULT_SE} \${R_OUT_${comp}}/Analyse/SE/${RESULT_SE} |
---|
[1040] | 522 | [ -f ${RESULT_SE} ] && IGCM_sys_Rm ${RESULT_SE} |
---|
[785] | 523 | # |
---|
| 524 | done |
---|
[2] | 525 | done |
---|
| 526 | |
---|
| 527 | # DODS copy |
---|
[903] | 528 | if [ X${config_Post_DodsCopy} = XTRUE ] ; then |
---|
| 529 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 530 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/SE |
---|
| 531 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/SE |
---|
| 532 | done |
---|
| 533 | fi |
---|
[2] | 534 | |
---|
[903] | 535 | # Temporal coverage id for atlas |
---|
[2] | 536 | YEARS=${an_deb}_${an_fin} |
---|
[370] | 537 | DIR_OUT=SE |
---|
[2] | 538 | |
---|
[1112] | 539 | export DEBUG_debug; export BigBrother ; export libIGCM; export SUBMIT_DIR; export POST_DIR; export Script_Output ; |
---|
| 540 | export StandAlone ; export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; |
---|
| 541 | export RESOL_SBG ; export YEARS; export DIR_OUT |
---|
| 542 | listVarEnv="DEBUG_debug,BigBrother,libIGCM,SUBMIT_DIR,POST_DIR,Script_Post_Output,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,YEARS,DIR_OUT" |
---|
[2] | 543 | export listVarEnv; |
---|
| 544 | |
---|
| 545 | #D- |
---|
| 546 | # -------------------------------------------------------------------- |
---|
| 547 | #D- Test if all was right before ATLAS |
---|
| 548 | # -------------------------------------------------------------------- |
---|
| 549 | IGCM_debug_Verif_Exit_Post |
---|
| 550 | |
---|
| 551 | if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] || \ |
---|
[15] | 552 | [ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] || \ |
---|
[2] | 553 | [ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then |
---|
[785] | 554 | # |
---|
[1112] | 555 | export Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 556 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 557 | export Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
| 558 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 559 | export Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 560 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 561 | export Script_Post_Output=additionnal.${PeriodDateEnd} ; |
---|
| 562 | IGCM_sys_QsubPost additionnal ; |
---|
[785] | 563 | # |
---|
[1112] | 564 | elif [ ${config_UserChoices_TagName} = "IPSLCM5" ] || \ |
---|
| 565 | [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || \ |
---|
| 566 | [ ${config_UserChoices_TagName} = "IPSLCM5B" ] || \ |
---|
| 567 | [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || \ |
---|
[957] | 568 | [ ${config_UserChoices_TagName} = "IPSLCM6" ] ; then |
---|
[1112] | 569 | export Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 570 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 571 | export Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
| 572 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
[1161] | 573 | #export Script_Post_Output=metrics_LMDZ.${PeriodDateEnd} ; |
---|
| 574 | #IGCM_sys_QsubPost metrics_LMDZ ; |
---|
[1112] | 575 | export Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 576 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 577 | export Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 578 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
[785] | 579 | # |
---|
[1112] | 580 | elif [ ${config_UserChoices_TagName} = "LMDZ4OR" ] || \ |
---|
| 581 | [ ${config_UserChoices_TagName} = "LMDZOR" ] || \ |
---|
[25] | 582 | [ ${config_UserChoices_TagName} = "LMDZ4OR_v2" ] ; then |
---|
[785] | 583 | # |
---|
[1112] | 584 | export Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
| 585 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
[1161] | 586 | #export Script_Post_Output=metrics_LMDZ.${PeriodDateEnd} ; |
---|
| 587 | #IGCM_sys_QsubPost metrics_LMDZ ; |
---|
[1112] | 588 | export Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 589 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
[785] | 590 | # |
---|
[45] | 591 | elif [ ${config_UserChoices_TagName} = "LMDZ" ] ; then |
---|
[785] | 592 | # |
---|
[1161] | 593 | #export Script_Post_Output=metrics_LMDZ.${PeriodDateEnd} ; |
---|
| 594 | #IGCM_sys_QsubPost metrics_LMDZ ; |
---|
[1112] | 595 | export Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
| 596 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
[785] | 597 | # |
---|
[1112] | 598 | elif [ ${config_UserChoices_TagName} = "OL" ] || \ |
---|
[2] | 599 | [ ${config_UserChoices_TagName} = "OL2" ] ; then |
---|
[785] | 600 | # |
---|
[1112] | 601 | export Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 602 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
[785] | 603 | # |
---|
[1112] | 604 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] || \ |
---|
| 605 | [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || \ |
---|
[957] | 606 | [ ${config_UserChoices_TagName} = "ORCA2_LIM3" ] ; then |
---|
[785] | 607 | # |
---|
[1112] | 608 | export Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 609 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 610 | # |
---|
[957] | 611 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] || \ |
---|
| 612 | [ ${config_UserChoices_TagName} = "ORCA2_LIM3_PISCES" ] ; then |
---|
[785] | 613 | # |
---|
[1112] | 614 | export Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 615 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 616 | export Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 617 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
[785] | 618 | # |
---|
[1112] | 619 | elif [ ${config_UserChoices_TagName} = "ORCA2_OFF_PISCES" ] ; then |
---|
[785] | 620 | # |
---|
[1112] | 621 | export Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 622 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
| 623 | # |
---|
[2] | 624 | fi |
---|
[203] | 625 | |
---|
[590] | 626 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[203] | 627 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|