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source: trunk/libIGCM/AA_create_se @ 200

Last change on this file since 200 was 192, checked in by sdipsl, 15 years ago
Cesium will post-process SX9 simulation Big clean in libIGCM_sys Testing only for now
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Date Author Revision`
File size: 18.5 KB

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[2]	1	#-Q- platine #!/usr/bin/ksh
	2	#-Q- platine ###################
	3	#-Q- platine ## PLATINE CEA ##
	4	#-Q- platine ###################
	5	#-Q- platine #BSUB -J SE # Nom du job
	6	#-Q- platine #BSUB -N # message a la fin du job
	7	#-Q- platine #BSUB -n 1 # reservation des processeurs pour le job
	8	#-Q- platine #BSUB -W 1:00 # Limite temps
[18]	9	#-Q- platine #BSUB -q post # Passage en queue post
[59]	10	#-Q- sx8brodie #!/bin/ksh
[2]	11	#-Q- sx8brodie #######################
	12	#-Q- sx8brodie ## SX8BRODIE IDRIS ##
	13	#-Q- sx8brodie #######################
[58]	14	#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
	15	#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
	16	#-Q- sx8brodie # Nom du travail LoadLeveler
[66]	17	#-Q- sx8brodie # @ job_name = SE
[58]	18	#-Q- sx8brodie # Fichier de sortie standard du travail
	19	#-Q- sx8brodie # @ output = $(job_name).$(jobid)
	20	#-Q- sx8brodie # Fichier de sortie d'erreur du travail
	21	#-Q- sx8brodie # @ error = $(job_name).$(jobid)
	22	#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
	23	#-Q- sx8brodie # @ notification = error
[178]	24	#-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $MASTER
[58]	25	#-Q- sx8brodie # @ queue
[68]	26	#-Q- aix6 #!/bin/ksh
	27	#-Q- aix6 #######################
	28	#-Q- aix6 ## VARGAS IDRIS ##
	29	#-Q- aix6 #######################
	30	#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
	31	#-Q- aix6 # @ wall_clock_limit = 10:00:00
	32	#-Q- aix6 # Nom du travail LoadLeveler
	33	#-Q- aix6 # @ job_name = SE
	34	#-Q- aix6 # Fichier de sortie standard du travail
	35	#-Q- aix6 # @ output = $(job_name).$(jobid)
	36	#-Q- aix6 # Fichier de sortie d'erreur du travail
	37	#-Q- aix6 # @ error = $(job_name).$(jobid)
	38	#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
	39	#-Q- aix6 # @ notification = error
[178]	40	#-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $MASTER
[68]	41	#-Q- aix6 # @ queue
[2]	42	#-Q- sx8mercure #!/bin/ksh
	43	#-Q- sx8mercure ######################
	44	#-Q- sx8mercure ## SX8MERCURE CEA ##
	45	#-Q- sx8mercure ######################
	46	#-Q- sx8mercure #PBS -N SE # Nom du job
	47	#-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr
	48	#-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission
	49	#-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go
	50	#-Q- sx8mercure #PBS -l cputim_job=1:00:00 # Limite temps a 1 heures
	51	#-Q- sx8mercure #PBS -q scalaire
[172]	52	#-Q- sx9mercure #!/bin/ksh
	53	#-Q- sx9mercure ######################
	54	#-Q- sx9mercure ## SX9MERCURE CEA ##
	55	#-Q- sx9mercure ######################
[192]	56	#-Q- sx9mercure #MSUB -r SE # Nom du job
	57	#-Q- sx9mercure #MSUB -N 1 # Reservation du noeud
	58	#-Q- sx9mercure #MSUB -n 1 # Reservation du processus
	59	#-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job
	60	#-Q- sx9mercure #MSUB -E "-j o"
	61	#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
	62	#-Q- sx9mercure ##MSUB -e nco.out # Sortie standard
	63	#-Q- sx9mercure ##MSUB -o nco.out # Sortie standard
[2]	64	#-Q- default #!/bin/ksh
	65	#-Q- default ##################
	66	#-Q- default ## DEFAULT HOST ##
	67	#-Q- default ##################
	68
[108]	69	# $Date$
	70	# $Author$
	71	# $Revision$
	72	# IPSL (2006)
	73	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
	74
	75	#set -eu
[2]	76	#set -vx
	77
	78	date
	79
	80	#-Q- sx8brodie export OMP_NUM_THREADS=1
[108]	81	#-Q- aix6 export OMP_NUM_THREADS=1
[2]	82
	83	########################################################################
	84
	85	#D- Flag to determine if this job in a standalone mode
	86	#D- Default : value from AA_job if any
	87	StandAlone=${StandAlone:=true}
	88
	89	#D- Flag to determine atlas job's output directory
	90	#D- Default : value from libIGCM_post.ksh if any
	91	POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
	92
	93	#D- Increased verbosity (1, 2, 3)
	94	#D- Default : value from AA_job if any
	95	Verbosity=${Verbosity:=3}
	96
	97	#D- Low level debug : to bypass lib test checks and stack construction
	98	#D- Default : value from AA_job if any
	99	DEBUG_debug=${DEBUG_debug:=false}
	100
	101	#D- Low level debug : to bypass lib test checks and stack construction
	102	#D- Default : value from AA_job if any
[108]	103	libIGCM=${libIGCM:=/path/to/your/libIGCM}
[2]	104
	105	#D- TEMPORARY Flag to determine atmospheric resolution
	106	#D- Default : value from atmospheric driver if any
[135]	107	RESOL_ATM=${RESOL_ATM:=ALL}
[2]	108
	109	#D- TEMPORARY Flag to determine ocean resolution
	110	#D- Default : value from ocean driver if any
	111	RESOL_OCE=${RESOL_OCE:=ORCA2}
	112
	113	#D- TEMPORARY Flag to determine ice resolution
	114	#D- Default : value from ice driver if any
	115	RESOL_ICE=${RESOL_ICE:=ORCA2}
	116
[178]	117	#D- TEMPORARY Flag to determine marine biogeochemistry resolution
	118	#D- Default : value from ice driver if any
	119	RESOL_MBG=${RESOL_MBG:=ORCA2}
	120
[2]	121	#D- Flag to determine surface resolution
	122	#D- Default : value from surface driver if any
[135]	123	RESOL_SRF=${RESOL_SRF:=ALL}
[2]	124
	125	########################################################################
	126
[108]	127	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
	128	( ${DEBUG_debug} ) && IGCM_debug_Check
	129	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
	130	( ${DEBUG_debug} ) && IGCM_card_Check
	131	. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
	132	( ${DEBUG_debug} ) && IGCM_date_Check
	133	#-------
	134	. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
[2]	135
	136	########################################################################
	137
	138	#set -vx
	139
	140	if [ ${DEBUG_debug} = true ] ; then
	141	IGCM_sys_MkdirWork ${RUN_DIR_PATH}
	142	echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok."
	143	fi
	144	IGCM_sys_Cd ${RUN_DIR_PATH}
	145
	146	if [ ${StandAlone} = true ] ; then
	147	CARD_DIR=${SUBMIT_DIR}
	148	else
	149	CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
	150	IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
	151	fi
	152
	153	#
	154	# First of all
	155	#
	156	IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices
	157	typeset option
	158	for option in ${config_UserChoices[*]} ; do
	159	IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
	160	done
	161	#
	162	echo
	163	IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices"
	164	IGCM_debug_PrintVariables 3 config_UserChoices_JobName
	165	IGCM_debug_PrintVariables 3 config_UserChoices_LongName
	166	IGCM_debug_PrintVariables 3 config_UserChoices_TagName
	167	IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
	168	IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
	169	IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
	170	IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
	171	echo
	172
	173	#==================================
	174
	175	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
	176	#
	177	IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents
	178	#
	179	IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency
	180	#
	181	# Determine period for seasonnal average. Default : value from AA_job if any
	182	#
	183	DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )}
	184	#
	185	PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )}
	186	#
	187	freq=$( echo ${config_Post_SeasonalFrequency} \| sed -e "s/[yY]//" )
	188	#
[149]	189	an_fin=$(( $( IGCM_date_ConvertGregorianDateToJulian ${PeriodDateEnd} ) / 1000 ))
[2]	190	an_deb=$( IGCM_date_YearDigit $(( an_fin - freq + 1 )) )
	191	an_fin=$( IGCM_date_YearDigit ${an_fin} )
	192	#
	193	# For each component selected determine which files need post-processing
	194	#
	195	for comp in ${config_ListOfComponents[*]} ; do
	196	#
	197	IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp}
	198	eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1
	199	#
	200	card=${CARD_DIR}/COMP/${compname}.card
	201	IGCM_card_DefineArrayFromOption ${card} OutputFiles List
	202	#
	203	ListFilesName=${compname}_OutputFiles_List
	204	eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1
	205	#
	206	if [ X${FileName0} != X${NULL_STR} ] ; then
	207	#
	208	#IGCM_debug_Print 1 "Component : ${compname}"
	209	#
	210	# INITIALISATION
	211	#
	212	eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1
	213	typeset i=0
	214	#
	215	until [ $i -eq $NbFiles ]; do
	216	#
	217	eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1
	218	eval file_in=${file_in_}
	219	let $(( i_ = i+2 ))
	220	eval flag_post_=\${${ListFilesName}[$i_]} > /dev/null 2>&1
	221	eval flag_post=${flag_post_}
	222	#
	223	if [ X${flag_post} != XNONE ] ; then
	224	#
	225	# Initialize ${flag_post}_${compname}_${post_freq}
	226	#
[66]	227	eval export ${flag_post}_${compname}_SeasonalFrequency=true
[2]	228	fi
	229	let $(( i=i+3 ))
	230	done
	231	fi
	232
[66]	233	for element in $( env \| grep Post_ \| grep ${compname}_SeasonalFrequency \| grep -i "=true" ) ; do
[2]	234	#
[131]	235	FILE=$( echo ${element} \| awk -F "_${compname}_SeasonalFrequency" '{print $1}' \| awk "-FPost_" '{print $2}' )
[2]	236	#
	237	# CREATE LIST
	238	#
	239	DIRECTORY=${R_SAVE}/${comp}/Analyse/SE
	240	#
	241	TestedFile=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${FILE}.nc
	242	#
[66]	243	IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile}
	244	if [ ! $? = 0 ] ; then
[2]	245	eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE}
[150]	246	if [ ! ${RebuildFrequency} = true ] ; then
	247	IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches
	248	eval set +A LISTE_PATCHES_${FILE} \$\{${compname}_Post_${FILE}_Patches[*]}
	249	if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then
	250	for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do
	251	if [ Xload${Patch} != X ] ; then
	252	. ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh
	253	eval load${Patch}=loaded
	254	fi
	255	done
	256	fi
[2]	257	fi
	258	fi
[150]	259	#
	260	done # for element
	261	done # for comp
[2]	262
	263	for comp in ${config_ListOfComponents[*]} ; do
	264	#
	265	eval R_OUT_${comp}=${R_SAVE}/${comp}
	266	#
	267	i=0
	268	for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do
	269	#
	270	# Determine in which output can we find file
	271	# IE : Output/MO or Output/DA or ...
	272	#
	273	FlagDir=$( echo ${file} \| awk -F "_" '{print $1}' )
	274	case ${FlagDir} in
	275	1Y) FreqDir=YE ;;
	276	1M) FreqDir=MO ;;
	277	5D\|1D) FreqDir=DA ;;
	278	HF) FreqDir=HF ;;
	279	INS) FreqDir=INS ;;
	280	esac
	281	#
	282	RESULT_SE=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${file}.nc
	283	# Do not redoo an existing SE
[66]	284	IGCM_sys_TestFileArchive ${R_SAVE}/${comp}/Analyse/SE/${RESULT_SE}
	285	if [ $? = 0 ] ; then
[2]	286	continue
	287	fi
	288	#
	289	eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/
	290	#
	291	case ${config_UserChoices_PeriodLength} in
	292	# For Yearly simulation :
	293	1Y\|1y)
	294	(( an = an_deb ))
	295	# Initialize array
[66]	296	#set -A liste_file_se
	297	#set -A liste_file_se_tmp
	298	unset liste_file_se
	299	unset liste_file_se_tmp
[2]	300	while [ ${an} -le ${an_fin} ] ; do
	301	moisL=$( IGCM_date_DaysInMonth ${an} ${mois} )
	302	#
	303	an4=$(printf "%04i\n" ${an} )
	304	#
	305	diy=$( IGCM_date_DaysInYear $an4 )
	306	afin=$( IGCM_date_AddDaysToGregorianDate ${an4}0101 $(( diy - 1 )) )
	307	date=${an4}0101_${afin}
[66]	308	#set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
	309	#set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc
	310	liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
	311	liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc
[2]	312	(( an = an + 1 ))
	313	done
	314	#
	315	IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH}
	316	eval ExitFlag=false
	317	IGCM_debug_Verif_Exit_Post
	318
	319	# Apply IGCM_Patch if needed
[150]	320	if [ ! ${RebuildFrequency} = true ] ; then
	321	if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then
	322	for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do
	323	for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do
	324	IGCM_${Patch} ${file_t}
	325	done
[2]	326	done
[150]	327	fi
[2]	328	fi
	329
	330	for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do
	331	#
	332	(( nb = ${mois} - 1 ))
	333	#
	334	OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc
	335	IGCM_sys_ncra -O -d time_counter,${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]}
	336	done
	337	IGCM_sys_Rm ${liste_file_se_tmp[*]}
	338	eval ExitFlag=false
	339	IGCM_debug_Verif_Exit_Post
	340	;;
	341	# For Monthly simulation :
	342	1M\|1m)
	343	for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do
	344	#
	345	(( nb = ${mois} - 1 ))
	346	#
	347	OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc
	348	#
	349	(( an = an_deb ))
	350	# Initialize array
[66]	351	#set -A liste_file_se
	352	#set -A liste_file_se_tmp
	353	unset liste_file_se
	354	unset liste_file_se_tmp
[2]	355	while [ ${an} -le ${an_fin} ] ; do
	356	moisL=$( IGCM_date_DaysInMonth ${an} ${mois} )
	357	#
	358	an4=$(printf "%04i\n" ${an} )
	359	#
	360	date=${an4}${mois}01_${an4}${mois}${moisL}
[66]	361	#set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
	362	#set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc
	363	liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
	364	liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc
	365
[2]	366	(( an = an + 1 ))
	367	done
	368	#
	369	IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH}
	370	eval ExitFlag=false
	371	IGCM_debug_Verif_Exit_Post
	372
	373	# Apply IGCM_Patch if needed
[150]	374	if [ ! ${RebuildFrequency} = true ] ; then
	375	if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then
	376	for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do
	377	for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do
	378	IGCM_${Patch} ${file_t}
	379	done
[2]	380	done
[150]	381	fi
[2]	382	fi
	383
	384	IGCM_sys_ncra -O ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]}
	385	IGCM_sys_Rm ${liste_file_se_tmp[*]}
	386	eval ExitFlag=false
	387	IGCM_debug_Verif_Exit_Post
	388	done
	389	;;
	390	D\|d)
	391	for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do
	392	#
	393	(( nb = ${mois} - 1 ))
	394	#
	395	OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc
	396	#
	397	(( an = an_deb ))
	398	# Initialize array
[66]	399	#set -A liste_file_se
	400	#set -A liste_file_se_tmp
	401	unset liste_file_se
	402	unset liste_file_se_tmp
[2]	403	while [ ${an} -le ${an_fin} ] ; do
	404	moisL=$( IGCM_date_DaysInMonth ${an} ${mois} )
	405	#
	406	an4=$(printf "%04i\n" ${an} )
	407	#
	408	length_d=$(( ${config_UserChoices_PeriodLength} - 1 ))
	409	# for one day
	410	if [ ${length_d} -eq 1 ] ; then
	411	(( length_d = 0 ))
	412	fi
	413	(( day = 1 ))
	414	while [ ${day} -le ${moisL} ] ; do
	415	day2=$(printf "%02i\n" ${day} )
	416	day_beg=${an4}${mois}${day2}
	417	day_end=$( IGCM_date_AddDaysToGregorianDate ${day_beg} ${length_d} )
	418	date=${an4}${mois}${day_beg}_${an4}${mois}${day_end}
[66]	419	#set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
	420	#set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc
	421	liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc
	422	liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc
[2]	423	(( day = day + 1 ))
	424	done
	425	(( an = an + 1 ))
	426	done
	427	#
	428	IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH}
	429	eval ExitFlag=false
	430	IGCM_debug_Verif_Exit_Post
	431
	432	# Apply IGCM_Patch if needed
[150]	433	if [ ! ${RebuildFrequency} = true ] ; then
	434	if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then
	435	for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do
	436	for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do
	437	IGCM_${Patch} ${file_t}
	438	done
[2]	439	done
[150]	440	fi
[2]	441	fi
	442
	443	IGCM_sys_ncra -O ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]}
	444	IGCM_sys_Rm ${liste_file_se_tmp[*]}
	445	eval ExitFlag=false
	446	IGCM_debug_Verif_Exit_Post
	447	done
	448	;;
	449	esac
	450	#
	451	IGCM_sys_ncrcat -O ${OUT_SE[*]} ${RESULT_SE}
	452	#
	453	IGCM_sys_Rm ${OUT_SE[*]}
	454	#
	455	${ncatted} -a modulo,time_counter,c,c," " ${RESULT_SE}
	456	#
	457	eval IGCM_sys_Put_Out ${RESULT_SE} \${R_OUT_${comp}}/Analyse/SE/${RESULT_SE}
	458	IGCM_sys_Rm ${RESULT_SE}
	459	#
	460	eval ExitFlag=false
	461	IGCM_debug_Verif_Exit_Post
	462	done
	463	done
	464
	465	# DODS copy
	466	for comp in ${config_ListOfComponents[*]} ; do
[67]	467	IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/SE
	468	[ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/SE
[2]	469	done
	470
	471	YEARS=${an_deb}_${an_fin}
	472
	473	export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone
[178]	474	export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF
[2]	475	export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS;
[178]	476	listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS"
[2]	477	export listVarEnv;
	478
	479	#D-
	480	# --------------------------------------------------------------------
	481	#D- Test if all was right before ATLAS
	482	# --------------------------------------------------------------------
	483	IGCM_debug_Verif_Exit_Post
	484
	485	if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] \|\| \
[15]	486	[ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] \|\| \
[2]	487	[ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then
	488	#
	489	IGCM_sys_QsubPost atlas_ORCHIDEE ;
	490	IGCM_sys_QsubPost atlas_LMDZ ;
	491	IGCM_sys_QsubPost atlas_ORCA_LIM ;
	492	IGCM_sys_QsubPost additionnal ;
	493	#
[74]	494	elif [ ${config_UserChoices_TagName} = "IPSLCM5" ] ; then
	495	IGCM_sys_QsubPost atlas_ORCHIDEE ;
	496	IGCM_sys_QsubPost atlas_LMDZ ;
	497	IGCM_sys_QsubPost atlas_ORCA_LIM ;
	498	#
[15]	499	elif [ ${config_UserChoices_TagName} = "LMDZ4OR" ] \|\| \
[43]	500	[ ${config_UserChoices_TagName} = "LMDZOR" ] \|\| \
[25]	501	[ ${config_UserChoices_TagName} = "LMDZ4OR_v2" ] ; then
[2]	502	#
	503	IGCM_sys_QsubPost atlas_LMDZ ;
	504	IGCM_sys_QsubPost atlas_ORCHIDEE ;
	505	#
[45]	506	elif [ ${config_UserChoices_TagName} = "LMDZ" ] ; then
[34]	507	#
	508	IGCM_sys_QsubPost atlas_LMDZ ;
	509	#
[15]	510	elif [ ${config_UserChoices_TagName} = "OL" ] \|\| \
[2]	511	[ ${config_UserChoices_TagName} = "OL2" ] ; then
	512	#
	513	IGCM_sys_QsubPost atlas_ORCHIDEE ;
	514	#
[87]	515	elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] \|\|
	516	[ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] \|\|
	517	[ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ; then
[2]	518	#
	519	IGCM_sys_QsubPost atlas_ORCA_LIM ;
[87]	520	# IGCM_sys_QsubPost additionnal ;
[2]	521	#
	522	fi

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