[2] | 1 | #-Q- platine #!/usr/bin/ksh |
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| 2 | #-Q- platine ################### |
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| 3 | #-Q- platine ## PLATINE CEA ## |
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| 4 | #-Q- platine ################### |
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| 5 | #-Q- platine #BSUB -J SE # Nom du job |
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| 6 | #-Q- platine #BSUB -N # message a la fin du job |
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| 7 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 8 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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[18] | 9 | #-Q- platine #BSUB -q post # Passage en queue post |
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[59] | 10 | #-Q- sx8brodie #!/bin/ksh |
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[2] | 11 | #-Q- sx8brodie ####################### |
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| 12 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 13 | #-Q- sx8brodie ####################### |
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[58] | 14 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 15 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
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[58] | 16 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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[66] | 17 | #-Q- sx8brodie # @ job_name = SE |
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[58] | 18 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 19 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 20 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 21 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 22 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 23 | #-Q- sx8brodie # @ notification = error |
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[213] | 24 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[58] | 25 | #-Q- sx8brodie # @ queue |
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[68] | 26 | #-Q- aix6 #!/bin/ksh |
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| 27 | #-Q- aix6 ####################### |
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| 28 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 29 | #-Q- aix6 ####################### |
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| 30 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 31 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
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[68] | 32 | #-Q- aix6 # Nom du travail LoadLeveler |
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| 33 | #-Q- aix6 # @ job_name = SE |
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| 34 | #-Q- aix6 # Fichier de sortie standard du travail |
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| 35 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 36 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 37 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 38 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 39 | #-Q- aix6 # @ notification = error |
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[213] | 40 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[68] | 41 | #-Q- aix6 # @ queue |
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[2] | 42 | #-Q- sx8mercure #!/bin/ksh |
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| 43 | #-Q- sx8mercure ###################### |
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| 44 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 45 | #-Q- sx8mercure ###################### |
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| 46 | #-Q- sx8mercure #PBS -N SE # Nom du job |
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| 47 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 48 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 49 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 50 | #-Q- sx8mercure #PBS -l cputim_job=1:00:00 # Limite temps a 1 heures |
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| 51 | #-Q- sx8mercure #PBS -q scalaire |
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[172] | 52 | #-Q- sx9mercure #!/bin/ksh |
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| 53 | #-Q- sx9mercure ###################### |
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| 54 | #-Q- sx9mercure ## SX9MERCURE CEA ## |
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| 55 | #-Q- sx9mercure ###################### |
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[192] | 56 | #-Q- sx9mercure #MSUB -r SE # Nom du job |
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| 57 | #-Q- sx9mercure #MSUB -N 1 # Reservation du noeud |
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| 58 | #-Q- sx9mercure #MSUB -n 1 # Reservation du processus |
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| 59 | #-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job |
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| 60 | #-Q- sx9mercure #MSUB -E "-j o" |
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| 61 | #-Q- sx9mercure #MSUB -E "-S /bin/ksh" |
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| 62 | #-Q- sx9mercure ##MSUB -e nco.out # Sortie standard |
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| 63 | #-Q- sx9mercure ##MSUB -o nco.out # Sortie standard |
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[2] | 64 | #-Q- default #!/bin/ksh |
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| 65 | #-Q- default ################## |
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| 66 | #-Q- default ## DEFAULT HOST ## |
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| 67 | #-Q- default ################## |
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| 68 | |
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[108] | 69 | # $Date$ |
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| 70 | # $Author$ |
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| 71 | # $Revision$ |
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| 72 | # IPSL (2006) |
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| 73 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 74 | |
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| 75 | #set -eu |
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[2] | 76 | #set -vx |
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| 77 | |
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| 78 | date |
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| 79 | |
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| 80 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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[108] | 81 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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[2] | 82 | |
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| 83 | ######################################################################## |
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| 84 | |
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| 85 | #D- Flag to determine if this job in a standalone mode |
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| 86 | #D- Default : value from AA_job if any |
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| 87 | StandAlone=${StandAlone:=true} |
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| 88 | |
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[206] | 89 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 90 | #D- Default : value from AA_job if any |
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| 91 | libIGCM=${libIGCM:=/path/to/your/libIGCM} |
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| 92 | |
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[213] | 93 | #D- Flag to determine if rebuild process has been performed asynchronously |
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| 94 | #D- Possible value true or false. |
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| 95 | #D- If true raw files has allready been patched by rebuild job |
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| 96 | #D- If false create_ts will patch the raw files |
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| 97 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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| 98 | RebuildFrequency=${RebuildFrequency:=true} |
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| 99 | |
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[2] | 100 | #D- Flag to determine atlas job's output directory |
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| 101 | #D- Default : value from libIGCM_post.ksh if any |
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| 102 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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| 103 | |
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| 104 | #D- Increased verbosity (1, 2, 3) |
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| 105 | #D- Default : value from AA_job if any |
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| 106 | Verbosity=${Verbosity:=3} |
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| 107 | |
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| 108 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 109 | #D- Default : value from AA_job if any |
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| 110 | DEBUG_debug=${DEBUG_debug:=false} |
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| 111 | |
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| 112 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 113 | #D- Default : value from atmospheric driver if any |
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[135] | 114 | RESOL_ATM=${RESOL_ATM:=ALL} |
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[2] | 115 | |
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| 116 | #D- TEMPORARY Flag to determine ocean resolution |
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| 117 | #D- Default : value from ocean driver if any |
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| 118 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 119 | |
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| 120 | #D- TEMPORARY Flag to determine ice resolution |
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| 121 | #D- Default : value from ice driver if any |
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| 122 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 123 | |
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[178] | 124 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 125 | #D- Default : value from ice driver if any |
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| 126 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 127 | |
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[2] | 128 | #D- Flag to determine surface resolution |
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| 129 | #D- Default : value from surface driver if any |
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[213] | 130 | RESOL_SRF=ALL |
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[2] | 131 | |
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[213] | 132 | #D- Flag to determine surface resolution |
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| 133 | #D- Default : value from surface driver if any |
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| 134 | RESOL_SBG=ALL |
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| 135 | |
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[2] | 136 | ######################################################################## |
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| 137 | |
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[108] | 138 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 139 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 140 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 141 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 142 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 143 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 144 | #------- |
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| 145 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[2] | 146 | |
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| 147 | ######################################################################## |
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| 148 | |
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| 149 | #set -vx |
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| 150 | |
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[202] | 151 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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[2] | 152 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 153 | |
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| 154 | if [ ${StandAlone} = true ] ; then |
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| 155 | CARD_DIR=${SUBMIT_DIR} |
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| 156 | else |
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| 157 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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| 158 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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| 159 | fi |
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| 160 | |
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| 161 | # |
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| 162 | # First of all |
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| 163 | # |
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| 164 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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| 165 | typeset option |
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| 166 | for option in ${config_UserChoices[*]} ; do |
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| 167 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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| 168 | done |
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| 169 | # |
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| 170 | echo |
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| 171 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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| 172 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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| 173 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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| 174 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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| 175 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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| 176 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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| 177 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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| 178 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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| 179 | echo |
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| 180 | |
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| 181 | #================================== |
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| 182 | |
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| 183 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 184 | # |
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| 185 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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| 186 | # |
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| 187 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
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| 188 | # |
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| 189 | # Determine period for seasonnal average. Default : value from AA_job if any |
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| 190 | # |
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| 191 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 192 | # |
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| 193 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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| 194 | # |
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| 195 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
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| 196 | # |
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[149] | 197 | an_fin=$(( $( IGCM_date_ConvertGregorianDateToJulian ${PeriodDateEnd} ) / 1000 )) |
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[2] | 198 | an_deb=$( IGCM_date_YearDigit $(( an_fin - freq + 1 )) ) |
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| 199 | an_fin=$( IGCM_date_YearDigit ${an_fin} ) |
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| 200 | # |
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| 201 | # For each component selected determine which files need post-processing |
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| 202 | # |
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| 203 | for comp in ${config_ListOfComponents[*]} ; do |
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| 204 | # |
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| 205 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 206 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 207 | # |
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| 208 | card=${CARD_DIR}/COMP/${compname}.card |
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| 209 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 210 | # |
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| 211 | ListFilesName=${compname}_OutputFiles_List |
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| 212 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 213 | # |
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| 214 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 215 | # |
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| 216 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 217 | # |
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| 218 | # INITIALISATION |
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| 219 | # |
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| 220 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 221 | typeset i=0 |
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| 222 | # |
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| 223 | until [ $i -eq $NbFiles ]; do |
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| 224 | # |
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| 225 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 226 | eval file_in=${file_in_} |
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| 227 | let $(( i_ = i+2 )) |
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| 228 | eval flag_post_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 229 | eval flag_post=${flag_post_} |
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| 230 | # |
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| 231 | if [ X${flag_post} != XNONE ] ; then |
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| 232 | # |
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| 233 | # Initialize ${flag_post}_${compname}_${post_freq} |
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| 234 | # |
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[66] | 235 | eval export ${flag_post}_${compname}_SeasonalFrequency=true |
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[2] | 236 | fi |
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| 237 | let $(( i=i+3 )) |
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| 238 | done |
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| 239 | fi |
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| 240 | |
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[66] | 241 | for element in $( env | grep Post_ | grep ${compname}_SeasonalFrequency | grep -i "=true" ) ; do |
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[2] | 242 | # |
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[131] | 243 | FILE=$( echo ${element} | awk -F "_${compname}_SeasonalFrequency" '{print $1}' | awk "-FPost_" '{print $2}' ) |
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[2] | 244 | # |
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| 245 | # CREATE LIST |
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| 246 | # |
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| 247 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
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| 248 | # |
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| 249 | TestedFile=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${FILE}.nc |
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| 250 | # |
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[66] | 251 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
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| 252 | if [ ! $? = 0 ] ; then |
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[2] | 253 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
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[150] | 254 | if [ ! ${RebuildFrequency} = true ] ; then |
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| 255 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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| 256 | eval set +A LISTE_PATCHES_${FILE} \$\{${compname}_Post_${FILE}_Patches[*]} |
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| 257 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
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| 258 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
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| 259 | if [ Xload${Patch} != X ] ; then |
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| 260 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
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| 261 | eval load${Patch}=loaded |
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| 262 | fi |
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| 263 | done |
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| 264 | fi |
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[2] | 265 | fi |
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| 266 | fi |
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[150] | 267 | # |
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| 268 | done # for element |
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| 269 | done # for comp |
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[2] | 270 | |
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| 271 | for comp in ${config_ListOfComponents[*]} ; do |
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| 272 | # |
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| 273 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 274 | # |
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| 275 | i=0 |
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| 276 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
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| 277 | # |
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| 278 | # Determine in which output can we find file |
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| 279 | # IE : Output/MO or Output/DA or ... |
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| 280 | # |
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| 281 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
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| 282 | case ${FlagDir} in |
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| 283 | 1Y) FreqDir=YE ;; |
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| 284 | 1M) FreqDir=MO ;; |
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| 285 | 5D|1D) FreqDir=DA ;; |
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| 286 | HF) FreqDir=HF ;; |
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| 287 | INS) FreqDir=INS ;; |
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| 288 | esac |
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| 289 | # |
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| 290 | RESULT_SE=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${file}.nc |
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| 291 | # Do not redoo an existing SE |
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[66] | 292 | IGCM_sys_TestFileArchive ${R_SAVE}/${comp}/Analyse/SE/${RESULT_SE} |
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| 293 | if [ $? = 0 ] ; then |
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[2] | 294 | continue |
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| 295 | fi |
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| 296 | # |
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| 297 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
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| 298 | # |
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| 299 | case ${config_UserChoices_PeriodLength} in |
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| 300 | # For Yearly simulation : |
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| 301 | 1Y|1y) |
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| 302 | (( an = an_deb )) |
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| 303 | # Initialize array |
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[66] | 304 | #set -A liste_file_se |
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| 305 | #set -A liste_file_se_tmp |
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| 306 | unset liste_file_se |
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| 307 | unset liste_file_se_tmp |
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[2] | 308 | while [ ${an} -le ${an_fin} ] ; do |
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| 309 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 310 | # |
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| 311 | an4=$(printf "%04i\n" ${an} ) |
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| 312 | # |
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| 313 | diy=$( IGCM_date_DaysInYear $an4 ) |
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| 314 | afin=$( IGCM_date_AddDaysToGregorianDate ${an4}0101 $(( diy - 1 )) ) |
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| 315 | date=${an4}0101_${afin} |
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[66] | 316 | #set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 317 | #set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 318 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 319 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
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[2] | 320 | (( an = an + 1 )) |
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| 321 | done |
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| 322 | # |
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| 323 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 324 | eval ExitFlag=false |
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| 325 | IGCM_debug_Verif_Exit_Post |
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| 326 | |
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| 327 | # Apply IGCM_Patch if needed |
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[150] | 328 | if [ ! ${RebuildFrequency} = true ] ; then |
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| 329 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 330 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 331 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 332 | IGCM_${Patch} ${file_t} |
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| 333 | done |
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[2] | 334 | done |
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[150] | 335 | fi |
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[2] | 336 | fi |
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| 337 | |
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| 338 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 339 | # |
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| 340 | (( nb = ${mois} - 1 )) |
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| 341 | # |
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| 342 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 343 | IGCM_sys_ncra -O -d time_counter,${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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| 344 | done |
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| 345 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 346 | eval ExitFlag=false |
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| 347 | IGCM_debug_Verif_Exit_Post |
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| 348 | ;; |
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| 349 | # For Monthly simulation : |
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| 350 | 1M|1m) |
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| 351 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 352 | # |
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| 353 | (( nb = ${mois} - 1 )) |
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| 354 | # |
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| 355 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 356 | # |
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| 357 | (( an = an_deb )) |
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| 358 | # Initialize array |
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[66] | 359 | #set -A liste_file_se |
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| 360 | #set -A liste_file_se_tmp |
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| 361 | unset liste_file_se |
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| 362 | unset liste_file_se_tmp |
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[2] | 363 | while [ ${an} -le ${an_fin} ] ; do |
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| 364 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 365 | # |
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| 366 | an4=$(printf "%04i\n" ${an} ) |
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| 367 | # |
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| 368 | date=${an4}${mois}01_${an4}${mois}${moisL} |
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[66] | 369 | #set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 370 | #set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 371 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 372 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
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| 373 | |
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[2] | 374 | (( an = an + 1 )) |
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| 375 | done |
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| 376 | # |
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| 377 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 378 | eval ExitFlag=false |
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| 379 | IGCM_debug_Verif_Exit_Post |
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| 380 | |
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| 381 | # Apply IGCM_Patch if needed |
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[150] | 382 | if [ ! ${RebuildFrequency} = true ] ; then |
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| 383 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 384 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 385 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 386 | IGCM_${Patch} ${file_t} |
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| 387 | done |
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[2] | 388 | done |
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[150] | 389 | fi |
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[2] | 390 | fi |
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| 391 | |
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| 392 | IGCM_sys_ncra -O ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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| 393 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 394 | eval ExitFlag=false |
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| 395 | IGCM_debug_Verif_Exit_Post |
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| 396 | done |
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| 397 | ;; |
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| 398 | *D|*d) |
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| 399 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 400 | # |
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| 401 | (( nb = ${mois} - 1 )) |
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| 402 | # |
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| 403 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 404 | # |
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| 405 | (( an = an_deb )) |
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| 406 | # Initialize array |
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[66] | 407 | #set -A liste_file_se |
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| 408 | #set -A liste_file_se_tmp |
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| 409 | unset liste_file_se |
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| 410 | unset liste_file_se_tmp |
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[2] | 411 | while [ ${an} -le ${an_fin} ] ; do |
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| 412 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 413 | # |
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| 414 | an4=$(printf "%04i\n" ${an} ) |
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| 415 | # |
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| 416 | length_d=$(( ${config_UserChoices_PeriodLength} - 1 )) |
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| 417 | # for one day |
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| 418 | if [ ${length_d} -eq 1 ] ; then |
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| 419 | (( length_d = 0 )) |
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| 420 | fi |
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| 421 | (( day = 1 )) |
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| 422 | while [ ${day} -le ${moisL} ] ; do |
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| 423 | day2=$(printf "%02i\n" ${day} ) |
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| 424 | day_beg=${an4}${mois}${day2} |
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| 425 | day_end=$( IGCM_date_AddDaysToGregorianDate ${day_beg} ${length_d} ) |
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| 426 | date=${an4}${mois}${day_beg}_${an4}${mois}${day_end} |
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[66] | 427 | #set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 428 | #set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 429 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 430 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
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[2] | 431 | (( day = day + 1 )) |
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| 432 | done |
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| 433 | (( an = an + 1 )) |
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| 434 | done |
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| 435 | # |
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| 436 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 437 | eval ExitFlag=false |
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| 438 | IGCM_debug_Verif_Exit_Post |
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| 439 | |
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| 440 | # Apply IGCM_Patch if needed |
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[150] | 441 | if [ ! ${RebuildFrequency} = true ] ; then |
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| 442 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 443 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 444 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 445 | IGCM_${Patch} ${file_t} |
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| 446 | done |
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[2] | 447 | done |
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[150] | 448 | fi |
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[2] | 449 | fi |
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| 450 | |
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| 451 | IGCM_sys_ncra -O ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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| 452 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 453 | eval ExitFlag=false |
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| 454 | IGCM_debug_Verif_Exit_Post |
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| 455 | done |
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| 456 | ;; |
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| 457 | esac |
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| 458 | # |
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| 459 | IGCM_sys_ncrcat -O ${OUT_SE[*]} ${RESULT_SE} |
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| 460 | # |
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| 461 | IGCM_sys_Rm ${OUT_SE[*]} |
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| 462 | # |
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| 463 | ${ncatted} -a modulo,time_counter,c,c," " ${RESULT_SE} |
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| 464 | # |
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| 465 | eval IGCM_sys_Put_Out ${RESULT_SE} \${R_OUT_${comp}}/Analyse/SE/${RESULT_SE} |
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| 466 | IGCM_sys_Rm ${RESULT_SE} |
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| 467 | # |
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| 468 | eval ExitFlag=false |
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| 469 | IGCM_debug_Verif_Exit_Post |
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| 470 | done |
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| 471 | done |
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| 472 | |
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| 473 | # DODS copy |
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| 474 | for comp in ${config_ListOfComponents[*]} ; do |
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[67] | 475 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/SE |
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| 476 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/SE |
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[2] | 477 | done |
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| 478 | |
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| 479 | YEARS=${an_deb}_${an_fin} |
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| 480 | |
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| 481 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
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[213] | 482 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
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[2] | 483 | export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS; |
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[213] | 484 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS" |
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[2] | 485 | export listVarEnv; |
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| 486 | |
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| 487 | #D- |
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| 488 | # -------------------------------------------------------------------- |
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| 489 | #D- Test if all was right before ATLAS |
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| 490 | # -------------------------------------------------------------------- |
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| 491 | IGCM_debug_Verif_Exit_Post |
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| 492 | |
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| 493 | if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] || \ |
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[15] | 494 | [ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] || \ |
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[2] | 495 | [ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then |
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| 496 | # |
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| 497 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
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| 498 | IGCM_sys_QsubPost atlas_LMDZ ; |
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| 499 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
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| 500 | IGCM_sys_QsubPost additionnal ; |
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| 501 | # |
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[74] | 502 | elif [ ${config_UserChoices_TagName} = "IPSLCM5" ] ; then |
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| 503 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
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| 504 | IGCM_sys_QsubPost atlas_LMDZ ; |
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| 505 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
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| 506 | # |
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[15] | 507 | elif [ ${config_UserChoices_TagName} = "LMDZ4OR" ] || \ |
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[43] | 508 | [ ${config_UserChoices_TagName} = "LMDZOR" ] || \ |
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[25] | 509 | [ ${config_UserChoices_TagName} = "LMDZ4OR_v2" ] ; then |
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[2] | 510 | # |
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| 511 | IGCM_sys_QsubPost atlas_LMDZ ; |
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| 512 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
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| 513 | # |
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[45] | 514 | elif [ ${config_UserChoices_TagName} = "LMDZ" ] ; then |
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[34] | 515 | # |
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| 516 | IGCM_sys_QsubPost atlas_LMDZ ; |
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| 517 | # |
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[15] | 518 | elif [ ${config_UserChoices_TagName} = "OL" ] || \ |
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[2] | 519 | [ ${config_UserChoices_TagName} = "OL2" ] ; then |
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| 520 | # |
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| 521 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
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| 522 | # |
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[87] | 523 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] || |
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| 524 | [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || |
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| 525 | [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ; then |
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[2] | 526 | # |
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| 527 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
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[87] | 528 | # IGCM_sys_QsubPost additionnal ; |
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[2] | 529 | # |
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| 530 | fi |
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[203] | 531 | |
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| 532 | # Clean RUN_DIR_PATH (necessary for cesium) |
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| 533 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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