[622] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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[626] | 4 | #-Q- curie #MSUB -r SE # Nom du job |
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[622] | 5 | #-Q- curie #MSUB -eo |
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| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 7 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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[741] | 8 | #-Q- curie #MSUB -q xlarge |
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[704] | 9 | #-Q- curie #MSUB -Q normal |
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[681] | 10 | #-Q- curie set +x |
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[770] | 11 | #-Q- ada #!/bin/ksh |
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| 12 | #-Q- ada ####################### |
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| 13 | #-Q- ada ## ADA IDRIS ## |
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| 14 | #-Q- ada ####################### |
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| 15 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 16 | #-Q- ada # @ wall_clock_limit = 10:00:00 |
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| 17 | #-Q- ada # Nom du travail LoadLeveler |
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| 18 | #-Q- ada # @ job_name = SE |
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| 19 | #-Q- ada # Fichier de sortie standard du travail |
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| 20 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 21 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 22 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 23 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 24 | #-Q- ada # @ notification = error |
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| 25 | #-Q- ada # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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| 26 | #-Q- ada # @ queue |
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[316] | 27 | #-Q- sx9mercure #!/bin/ksh |
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[616] | 28 | #-Q- sx9mercure ###################### |
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| 29 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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| 30 | #-Q- sx9mercure ###################### |
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| 31 | #-Q- sx9mercure #PBS -N SE # Nom du job |
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| 32 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 33 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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[620] | 34 | #-Q- sx9mercure #PBS -l memsz_job=8gb # Limite memoire a 1 Go |
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[624] | 35 | #-Q- sx9mercure #PBS -l elapstim_req=24:00:00 # Limite temps a 1 heures |
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[616] | 36 | #-Q- sx9mercure #PBS -q scalaire |
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[640] | 37 | #-Q- sx9mercure #PBS -r n |
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[222] | 38 | #-Q- titane #!/bin/ksh |
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| 39 | #-Q- titane ###################### |
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| 40 | #-Q- titane ## TITANE CEA ## |
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| 41 | #-Q- titane ###################### |
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| 42 | #-Q- titane #MSUB -r SE # Nom du job |
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[544] | 43 | #-Q- titane #MSUB -eo |
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[222] | 44 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 45 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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[544] | 46 | #-Q- titane #MSUB -q mono |
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[643] | 47 | #-Q- titane #MSUB -E '-rn' |
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[281] | 48 | #-Q- lxiv8 ###################### |
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| 49 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 50 | #-Q- lxiv8 ###################### |
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| 51 | #-Q- lxiv8 #PBS -N SE |
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| 52 | #-Q- lxiv8 #PBS -m a |
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| 53 | #-Q- lxiv8 #PBS -j oe |
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| 54 | #-Q- lxiv8 #PBS -q medium |
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| 55 | #-Q- lxiv8 #PBS -o SE.$$ |
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| 56 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[2] | 57 | #-Q- default #!/bin/ksh |
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| 58 | #-Q- default ################## |
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| 59 | #-Q- default ## DEFAULT HOST ## |
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| 60 | #-Q- default ################## |
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| 61 | |
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[373] | 62 | #************************************************************** |
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| 63 | # Author: Sebastien Denvil |
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| 64 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 65 | # $Revision:: $ Revision of last commit |
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| 66 | # $Author:: $ Author of last commit |
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| 67 | # $Date:: $ Date of last commit |
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[108] | 68 | # IPSL (2006) |
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| 69 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 70 | # |
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| 71 | #************************************************************** |
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[108] | 72 | |
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| 73 | #set -eu |
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[2] | 74 | #set -vx |
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| 75 | |
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| 76 | date |
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| 77 | |
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[770] | 78 | #-Q- ada export OMP_NUM_THREADS=1 |
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[2] | 79 | |
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[712] | 80 | #D- Task type (computing or post-processing) |
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| 81 | TaskType=post-processing |
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| 82 | |
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[2] | 83 | ######################################################################## |
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| 84 | |
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| 85 | #D- Flag to determine if this job in a standalone mode |
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| 86 | #D- Default : value from AA_job if any |
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| 87 | StandAlone=${StandAlone:=true} |
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| 88 | |
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[554] | 89 | #D- Path to libIGCM |
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[206] | 90 | #D- Default : value from AA_job if any |
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[229] | 91 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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[206] | 92 | |
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[213] | 93 | #D- Flag to determine if rebuild process has been performed asynchronously |
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| 94 | #D- Possible value true or false. |
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| 95 | #D- If true raw files has allready been patched by rebuild job |
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| 96 | #D- If false create_ts will patch the raw files |
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| 97 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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| 98 | RebuildFrequency=${RebuildFrequency:=true} |
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| 99 | |
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[2] | 100 | #D- Flag to determine atlas job's output directory |
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| 101 | #D- Default : value from libIGCM_post.ksh if any |
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[370] | 102 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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[2] | 103 | |
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| 104 | #D- Increased verbosity (1, 2, 3) |
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| 105 | #D- Default : value from AA_job if any |
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| 106 | Verbosity=${Verbosity:=3} |
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| 107 | |
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| 108 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 109 | #D- Default : value from AA_job if any |
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| 110 | DEBUG_debug=${DEBUG_debug:=false} |
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| 111 | |
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| 112 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 113 | #D- Default : value from atmospheric driver if any |
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[135] | 114 | RESOL_ATM=${RESOL_ATM:=ALL} |
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[2] | 115 | |
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[257] | 116 | #D- Flag to determine surface resolution |
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| 117 | #D- Default : value from surface driver if any |
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| 118 | RESOL_SRF=ALL |
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| 119 | |
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| 120 | #D- Flag to determine surface resolution |
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| 121 | #D- Default : value from surface driver if any |
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| 122 | RESOL_SBG=ALL |
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| 123 | |
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[2] | 124 | #D- TEMPORARY Flag to determine ocean resolution |
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| 125 | #D- Default : value from ocean driver if any |
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| 126 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 127 | |
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| 128 | #D- TEMPORARY Flag to determine ice resolution |
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| 129 | #D- Default : value from ice driver if any |
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| 130 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 131 | |
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[178] | 132 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 133 | #D- Default : value from ice driver if any |
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| 134 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 135 | |
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[2] | 136 | ######################################################################## |
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| 137 | |
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[108] | 138 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 139 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 140 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 141 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 142 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 143 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 144 | #------- |
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| 145 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[731] | 146 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[2] | 147 | |
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| 148 | ######################################################################## |
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| 149 | |
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| 150 | #set -vx |
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| 151 | |
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[202] | 152 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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[2] | 153 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 154 | |
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[436] | 155 | # ------------------------------------------------------------------ |
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| 156 | # Test if all was right before proceeding further |
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| 157 | # ------------------------------------------------------------------ |
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| 158 | IGCM_debug_Verif_Exit_Post |
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| 159 | |
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[2] | 160 | if [ ${StandAlone} = true ] ; then |
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| 161 | CARD_DIR=${SUBMIT_DIR} |
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| 162 | else |
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[647] | 163 | CARD_DIR=${RUN_DIR_PATH} |
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[640] | 164 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 165 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 166 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 167 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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[2] | 168 | fi |
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| 169 | |
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[616] | 170 | #================================== |
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[2] | 171 | # First of all |
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| 172 | # |
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[727] | 173 | # Read libIGCM compatibility version in config.card |
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| 174 | # Read UserChoices section |
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| 175 | # Read Ensemble section |
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| 176 | # Read Post section |
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| 177 | # Define all netcdf output directories |
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[616] | 178 | #================================== |
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[727] | 179 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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[616] | 180 | |
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| 181 | #================================== |
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[633] | 182 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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| 183 | if [ X${PackDefault} = Xtrue ] ; then |
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| 184 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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| 185 | else |
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| 186 | config_Post_PackFrequency=NONE |
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| 187 | fi |
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[616] | 188 | |
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| 189 | #================================== |
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| 190 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
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| 191 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
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| 192 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
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| 193 | fi |
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| 194 | |
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| 195 | #================================== |
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[727] | 196 | # Read ListOfComponents section: |
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[2] | 197 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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[727] | 198 | |
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| 199 | #================================== |
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| 200 | # Read SeasonalFrequency: |
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[2] | 201 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
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[727] | 202 | |
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[2] | 203 | # |
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| 204 | # Determine period for seasonnal average. Default : value from AA_job if any |
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| 205 | # |
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| 206 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 207 | # |
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| 208 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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| 209 | # |
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| 210 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
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| 211 | # |
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[149] | 212 | an_fin=$(( $( IGCM_date_ConvertGregorianDateToJulian ${PeriodDateEnd} ) / 1000 )) |
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[2] | 213 | an_deb=$( IGCM_date_YearDigit $(( an_fin - freq + 1 )) ) |
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| 214 | an_fin=$( IGCM_date_YearDigit ${an_fin} ) |
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| 215 | # |
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| 216 | # For each component selected determine which files need post-processing |
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| 217 | # |
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| 218 | for comp in ${config_ListOfComponents[*]} ; do |
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[785] | 219 | # |
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| 220 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 221 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 222 | # |
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| 223 | card=${CARD_DIR}/COMP/${compname}.card |
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| 224 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 225 | # |
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| 226 | ListFilesName=${compname}_OutputFiles_List |
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| 227 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 228 | # |
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| 229 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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[2] | 230 | # |
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[785] | 231 | # INITIALISATION |
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[2] | 232 | # |
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[785] | 233 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 234 | typeset i=2 |
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[2] | 235 | # |
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[785] | 236 | until [ $i -gt $NbFiles ]; do |
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| 237 | # |
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| 238 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 239 | # |
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| 240 | if [ X${flag_post} != XNONE ] ; then |
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| 241 | # |
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| 242 | # Check if seasonal is required for this file |
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| 243 | # |
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| 244 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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| 245 | # |
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| 246 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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| 247 | # |
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| 248 | # variable option allready typeset above |
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| 249 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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| 250 | if [ ${option} = Seasonal ] ; then |
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| 251 | FoundSeasonal=true |
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| 252 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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| 253 | fi |
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| 254 | done |
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| 255 | # |
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| 256 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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| 257 | eval ${compname}_${flag_post}_Seasonal=ON |
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| 258 | fi |
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| 259 | # |
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| 260 | if [ ! X$( eval echo \${${compname}_${flag_post}_Seasonal} ) = XON ] ; then |
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| 261 | (( i=i+3 )) |
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| 262 | continue |
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| 263 | fi |
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| 264 | # |
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| 265 | # CREATE LIST |
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| 266 | # |
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| 267 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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| 268 | # |
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| 269 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
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| 270 | # |
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| 271 | TestedFile=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${FILE}.nc |
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| 272 | # |
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| 273 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
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| 274 | if [ ! $? = 0 ] ; then |
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| 275 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
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| 276 | if [ ! ${RebuildFrequency} = true ] ; then |
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| 277 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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| 278 | eval set +A LISTE_PATCHES_${FILE} \$\{${compname}_Post_${FILE}_Patches[*]} |
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| 279 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
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| 280 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
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| 281 | if [ Xload${Patch} != X ] ; then |
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| 282 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
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| 283 | eval load${Patch}=loaded |
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| 284 | fi |
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| 285 | done |
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| 286 | fi |
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| 287 | fi |
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| 288 | fi |
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| 289 | fi |
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| 290 | (( i=i+3 )) |
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| 291 | done # until [ $i -eq $NbFiles ] |
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| 292 | fi |
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[150] | 293 | done # for comp |
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[2] | 294 | |
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| 295 | for comp in ${config_ListOfComponents[*]} ; do |
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[785] | 296 | # |
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| 297 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 298 | # |
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| 299 | i=0 |
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| 300 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
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[2] | 301 | # |
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[785] | 302 | # Determine in which output can we find file |
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| 303 | # IE : Output/MO or Output/DA or ... |
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[2] | 304 | # |
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[785] | 305 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
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| 306 | case ${FlagDir} in |
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| 307 | 1Y) FreqDir=YE ;; |
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| 308 | 1M) FreqDir=MO ;; |
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| 309 | 5D|1D) FreqDir=DA ;; |
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| 310 | HF) FreqDir=HF ;; |
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| 311 | 3H) FreqDir=HF ;; |
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| 312 | INS) FreqDir=INS ;; |
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| 313 | esac |
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| 314 | # |
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| 315 | RESULT_SE=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${file}.nc |
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| 316 | # Do not redoo an existing SE |
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| 317 | IGCM_sys_TestFileArchive ${R_SAVE}/${comp}/Analyse/SE/${RESULT_SE} |
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| 318 | if [ $? = 0 ] ; then |
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| 319 | continue |
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| 320 | fi |
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| 321 | # |
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| 322 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
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| 323 | # |
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| 324 | case ${config_UserChoices_PeriodLength} in |
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| 325 | # For Yearly simulation : |
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| 326 | 1Y|1y) |
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| 327 | (( an = an_deb )) |
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| 328 | # Initialize array |
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| 329 | #set -A liste_file_se |
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| 330 | #set -A liste_file_se_tmp |
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| 331 | unset liste_file_se |
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| 332 | unset liste_file_se_tmp |
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| 333 | while [ ${an} -le ${an_fin} ] ; do |
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| 334 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 335 | # |
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| 336 | an4=$(printf "%04i\n" ${an} ) |
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| 337 | # |
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| 338 | diy=$( IGCM_date_DaysInYear $an4 ) |
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| 339 | afin=$( IGCM_date_AddDaysToGregorianDate ${an4}0101 $(( diy - 1 )) ) |
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| 340 | date=${an4}0101_${afin} |
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| 341 | #set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 342 | #set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 343 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 344 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
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| 345 | (( an = an + 1 )) |
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| 346 | done |
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| 347 | # |
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| 348 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 349 | IGCM_debug_Verif_Exit_Post |
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| 350 | |
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| 351 | # Apply IGCM_Patch if needed |
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| 352 | if [ ! ${RebuildFrequency} = true ] ; then |
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| 353 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 354 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 355 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 356 | IGCM_${Patch} ${file_t} |
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| 357 | done |
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| 358 | done |
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| 359 | fi |
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| 360 | fi |
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| 361 | |
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| 362 | # Search of common list of variables to be treated |
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| 363 | nbfile=0 |
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| 364 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
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| 365 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
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| 366 | (( nbfile = nbfile + 1 )) |
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| 367 | done |
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| 368 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
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| 369 | IGCM_sys_Rm tmpfile_ncra |
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| 370 | |
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| 371 | # detect time counter : time or time_counter ie unlimited variable |
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| 372 | var_unlim=$(ncdump -h ${liste_file_se_tmp[1]}|grep UNLIMITED|awk '{print $1}') |
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| 373 | |
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| 374 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 375 | # |
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| 376 | (( nb = ${mois} - 1 )) |
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| 377 | # |
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| 378 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 379 | IGCM_sys_ncra -O -v ${list_var_final_ncra} -d ${var_unlim},${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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| 380 | done |
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| 381 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 382 | ;; |
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| 383 | # For Monthly simulation : |
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| 384 | 1M|1m) |
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| 385 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 386 | # |
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| 387 | (( nb = ${mois} - 1 )) |
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| 388 | # |
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| 389 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 390 | # |
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| 391 | (( an = an_deb )) |
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[2] | 392 | # Initialize array |
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[785] | 393 | #set -A liste_file_se |
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| 394 | #set -A liste_file_se_tmp |
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| 395 | unset liste_file_se |
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| 396 | unset liste_file_se_tmp |
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| 397 | while [ ${an} -le ${an_fin} ] ; do |
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| 398 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 399 | # |
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| 400 | an4=$(printf "%04i\n" ${an} ) |
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| 401 | # |
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| 402 | date=${an4}${mois}01_${an4}${mois}${moisL} |
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| 403 | #set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 404 | #set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 405 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 406 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
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[2] | 407 | |
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[785] | 408 | (( an = an + 1 )) |
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| 409 | done |
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| 410 | # |
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| 411 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 412 | IGCM_debug_Verif_Exit_Post |
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[370] | 413 | |
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[785] | 414 | # Apply IGCM_Patch if needed |
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| 415 | if [ ! ${RebuildFrequency} = true ] ; then |
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| 416 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 417 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 418 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 419 | IGCM_${Patch} ${file_t} |
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| 420 | done |
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| 421 | done |
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| 422 | fi |
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| 423 | fi |
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[66] | 424 | |
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[785] | 425 | # Search of common list of variables to be treated |
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| 426 | nbfile=0 |
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| 427 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
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| 428 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
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| 429 | (( nbfile = nbfile + 1 )) |
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| 430 | done |
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| 431 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
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| 432 | IGCM_sys_Rm tmpfile_ncra |
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[370] | 433 | |
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[785] | 434 | IGCM_sys_ncra -O -v ${list_var_final_ncra} ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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[231] | 435 | |
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[785] | 436 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 437 | done |
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| 438 | ;; |
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| 439 | *D|*d) |
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| 440 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 441 | # |
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| 442 | (( nb = ${mois} - 1 )) |
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| 443 | # |
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| 444 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 445 | # |
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| 446 | (( an = an_deb )) |
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| 447 | # Initialize array |
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| 448 | #set -A liste_file_se |
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| 449 | #set -A liste_file_se_tmp |
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| 450 | unset liste_file_se |
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| 451 | unset liste_file_se_tmp |
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| 452 | while [ ${an} -le ${an_fin} ] ; do |
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| 453 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 454 | # |
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| 455 | an4=$(printf "%04i\n" ${an} ) |
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| 456 | # |
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| 457 | length_d=$(( ${config_UserChoices_PeriodLength} - 1 )) |
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| 458 | # for one day |
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| 459 | if [ ${length_d} -eq 1 ] ; then |
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| 460 | (( length_d = 0 )) |
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| 461 | fi |
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| 462 | (( day = 1 )) |
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| 463 | while [ ${day} -le ${moisL} ] ; do |
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| 464 | day2=$(printf "%02i\n" ${day} ) |
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| 465 | day_beg=${an4}${mois}${day2} |
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| 466 | day_end=$( IGCM_date_AddDaysToGregorianDate ${day_beg} ${length_d} ) |
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| 467 | date=${an4}${mois}${day_beg}_${an4}${mois}${day_end} |
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| 468 | #set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 469 | #set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 470 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 471 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
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| 472 | (( day = day + 1 )) |
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| 473 | done |
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| 474 | (( an = an + 1 )) |
---|
| 475 | done |
---|
| 476 | # |
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| 477 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 478 | IGCM_debug_Verif_Exit_Post |
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[2] | 479 | |
---|
[785] | 480 | # Apply IGCM_Patch if needed |
---|
| 481 | if [ ! ${RebuildFrequency} = true ] ; then |
---|
| 482 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 483 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
---|
| 484 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 485 | IGCM_${Patch} ${file_t} |
---|
| 486 | done |
---|
| 487 | done |
---|
| 488 | fi |
---|
| 489 | fi |
---|
[231] | 490 | |
---|
[785] | 491 | # Search of common list of variables to be treated |
---|
| 492 | nbfile=0 |
---|
| 493 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
---|
| 494 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
---|
| 495 | (( nbfile = nbfile + 1 )) |
---|
| 496 | done |
---|
| 497 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 498 | IGCM_sys_Rm tmpfile_ncra |
---|
[231] | 499 | |
---|
[785] | 500 | IGCM_sys_ncra -O -v ${list_var_final_ncra} ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
---|
| 501 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
---|
[231] | 502 | done |
---|
[785] | 503 | ;; |
---|
| 504 | esac |
---|
| 505 | # |
---|
[231] | 506 | |
---|
[785] | 507 | # Search of common list of variables to be treated |
---|
| 508 | nbfile=0 |
---|
| 509 | for file_common_var in ${OUT_SE[*]} ; do |
---|
| 510 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncrcat |
---|
| 511 | (( nbfile = nbfile + 1 )) |
---|
| 512 | done |
---|
| 513 | list_var_final_ncrcat=`cat tmpfile_ncrcat | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
| 514 | IGCM_sys_Rm tmpfile_ncrcat |
---|
[370] | 515 | |
---|
[785] | 516 | IGCM_sys_ncrcat -O -v ${list_var_final_ncrcat} ${OUT_SE[*]} ${RESULT_SE} |
---|
| 517 | # |
---|
| 518 | IGCM_sys_Rm ${OUT_SE[*]} |
---|
| 519 | # |
---|
| 520 | # detect time counter : time or time_counter ie unlimited variable |
---|
| 521 | var_unlim=$(ncdump -h ${RESULT_SE}|grep UNLIMITED| cut -d ' ' -f 1) |
---|
| 522 | |
---|
| 523 | # Put correct climatological axis following calendar |
---|
| 524 | case ${config_UserChoices_CalendarType} in |
---|
| 525 | 360d|360_day) |
---|
| 526 | # 360 days |
---|
| 527 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15, 45, 75, 105, 135, 165, 195, 225, 255, 285, 315, 345.} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 30, 30, 60, 60, 90, 90, 120, 120, 150, 150, 180, 180, 210, 210, 240, 240, 270, 270, 300, 300, 330, 330, 360.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"360_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 528 | ;; |
---|
| 529 | noleap|365_day) |
---|
| 530 | # 365 days |
---|
| 531 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45, 74.5, 105, 135.5, 166, 196.5, 227.5, 258, 288.5, 319, 349.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59, 59, 90, 90, 120, 120, 151, 151, 181, 181, 212, 212, 243, 243, 273, 273, 304, 304, 334, 334, 365.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"365_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 532 | ;; |
---|
| 533 | all_leap|366_day) |
---|
| 534 | # 366 days |
---|
| 535 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.5, 75.5, 106, 136.5, 167, 197.5, 228.5, 259, 289.5, 320, 350.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 60, 60, 91, 91, 121, 121, 152, 152, 182, 182, 213, 213, 244, 244, 274, 274, 305, 305, 335, 335, 366.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"366_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 536 | ;; |
---|
| 537 | leap|gregorian|standard) |
---|
| 538 | # 365.2425 days |
---|
| 539 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.12125, 74.7425, 105.2425, 135.7425, 166.2425, 196.7425, 227.7425, 258.2425, 288.7425, 319.2425, 349.7425} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59.2425, 59.2425, 90.2425, 90.2425, 120.2425, 120.2425, 151.2425, 151.2425, 181.2425, 181.2425, 212.2425, 212.2425, 243.2425, 243.2425, 273.2425, 273.2425, 304.2425, 304.2425, 334.2425, 334.2425, 365.2425} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"gregorian\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
| 540 | ;; |
---|
| 541 | esac |
---|
| 542 | eval IGCM_sys_ncap2 -Oh -s $ncap2cmd ${RESULT_SE} tmp.nc |
---|
| 543 | IGCM_sys_Rm ${RESULT_SE} |
---|
| 544 | IGCM_sys_Mv tmp.nc ${RESULT_SE} |
---|
| 545 | # |
---|
| 546 | eval IGCM_sys_Put_Out ${RESULT_SE} \${R_OUT_${comp}}/Analyse/SE/${RESULT_SE} |
---|
| 547 | IGCM_sys_Rm ${RESULT_SE} |
---|
| 548 | # |
---|
| 549 | done |
---|
[2] | 550 | done |
---|
| 551 | |
---|
| 552 | # DODS copy |
---|
| 553 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 554 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/SE |
---|
| 555 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/SE |
---|
[2] | 556 | done |
---|
| 557 | |
---|
| 558 | YEARS=${an_deb}_${an_fin} |
---|
[370] | 559 | DIR_OUT=SE |
---|
[2] | 560 | |
---|
| 561 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
[213] | 562 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
[370] | 563 | export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS; export DIR_OUT |
---|
| 564 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS,DIR_OUT" |
---|
[2] | 565 | export listVarEnv; |
---|
| 566 | |
---|
| 567 | #D- |
---|
| 568 | # -------------------------------------------------------------------- |
---|
| 569 | #D- Test if all was right before ATLAS |
---|
| 570 | # -------------------------------------------------------------------- |
---|
| 571 | IGCM_debug_Verif_Exit_Post |
---|
| 572 | |
---|
| 573 | if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] || \ |
---|
[15] | 574 | [ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] || \ |
---|
[2] | 575 | [ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then |
---|
[785] | 576 | # |
---|
| 577 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 578 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 579 | Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
| 580 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 581 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 582 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 583 | Script_Post_Output=additionnal.${PeriodDateEnd} ; |
---|
| 584 | IGCM_sys_QsubPost additionnal ; |
---|
| 585 | # |
---|
[263] | 586 | elif [ ${config_UserChoices_TagName} = "IPSLCM5" ] || \ |
---|
[367] | 587 | [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || \ |
---|
[461] | 588 | [ ${config_UserChoices_TagName} = "IPSLCM5B" ] || \ |
---|
[367] | 589 | [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] ; then |
---|
[785] | 590 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 591 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 592 | Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
| 593 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 594 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 595 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 596 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 597 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
| 598 | # |
---|
[15] | 599 | elif [ ${config_UserChoices_TagName} = "LMDZ4OR" ] || \ |
---|
[43] | 600 | [ ${config_UserChoices_TagName} = "LMDZOR" ] || \ |
---|
[25] | 601 | [ ${config_UserChoices_TagName} = "LMDZ4OR_v2" ] ; then |
---|
[785] | 602 | # |
---|
| 603 | Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
| 604 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 605 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 606 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 607 | # |
---|
[45] | 608 | elif [ ${config_UserChoices_TagName} = "LMDZ" ] ; then |
---|
[785] | 609 | # |
---|
| 610 | Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
| 611 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
| 612 | # |
---|
[15] | 613 | elif [ ${config_UserChoices_TagName} = "OL" ] || \ |
---|
[2] | 614 | [ ${config_UserChoices_TagName} = "OL2" ] ; then |
---|
[785] | 615 | # |
---|
| 616 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
| 617 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
| 618 | # |
---|
[87] | 619 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] || |
---|
[242] | 620 | [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] ; then |
---|
[785] | 621 | # |
---|
| 622 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 623 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
[242] | 624 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ; then |
---|
[785] | 625 | # |
---|
| 626 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
| 627 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
| 628 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 629 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
[242] | 630 | elif [ ${config_UserChoices_TagName} = "ORCA2_OFF_PISCES" ] ; then |
---|
[785] | 631 | # |
---|
| 632 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
| 633 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
| 634 | # |
---|
[2] | 635 | fi |
---|
[203] | 636 | |
---|
[590] | 637 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[203] | 638 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|