1 | #-Q- curie ###################### |
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2 | #-Q- curie ## CURIE TGCC/CEA ## |
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3 | #-Q- curie ###################### |
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4 | #-Q- curie #MSUB -r SE # Nom du job |
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5 | #-Q- curie #MSUB -eo |
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6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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7 | #-Q- curie #MSUB -T 36000 # Limite de temps elapsed du job |
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8 | #-Q- curie #MSUB -q xlarge |
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9 | #-Q- curie #MSUB -Q normal |
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10 | #-Q- curie #MSUB -A ::default_project:: |
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11 | #-Q- curie set +x |
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12 | #-Q- ada #!/bin/ksh |
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13 | #-Q- ada ####################### |
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14 | #-Q- ada ## ADA IDRIS ## |
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15 | #-Q- ada ####################### |
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16 | #-Q- ada # @ job_type = serial |
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17 | #-Q- ada # @ requirements = (Feature == "prepost") |
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18 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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19 | #-Q- ada # @ wall_clock_limit = 10:00:00 |
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20 | #-Q- ada # Nom du travail LoadLeveler |
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21 | #-Q- ada # @ job_name = SE |
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22 | #-Q- ada # Fichier de sortie standard du travail |
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23 | #-Q- ada # @ output = $(job_name).$(jobid) |
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24 | #-Q- ada # Fichier de sortie d'erreur du travail |
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25 | #-Q- ada # @ error = $(job_name).$(jobid) |
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26 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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27 | #-Q- ada # @ notification = error |
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28 | #-Q- ada # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $POST_DIR ; $MASTER ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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29 | #-Q- ada # @ queue |
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30 | #-Q- lxiv8 ###################### |
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31 | #-Q- lxiv8 ## OBELIX LSCE ## |
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32 | #-Q- lxiv8 ###################### |
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33 | #-Q- lxiv8 #PBS -N SE |
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34 | #-Q- lxiv8 #PBS -m a |
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35 | #-Q- lxiv8 #PBS -j oe |
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36 | #-Q- lxiv8 #PBS -q medium |
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37 | #-Q- lxiv8 #PBS -o SE.$$ |
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38 | #-Q- lxiv8 #PBS -S /bin/ksh |
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39 | #-Q- default #!/bin/ksh |
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40 | #-Q- default ################## |
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41 | #-Q- default ## DEFAULT HOST ## |
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42 | #-Q- default ################## |
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43 | |
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44 | #************************************************************** |
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45 | # Author: Sebastien Denvil |
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46 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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47 | # $Revision:: $ Revision of last commit |
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48 | # $Author:: $ Author of last commit |
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49 | # $Date:: $ Date of last commit |
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50 | # IPSL (2006) |
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51 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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52 | # |
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53 | #************************************************************** |
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54 | |
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55 | #set -eu |
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56 | #set -vx |
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57 | |
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58 | date |
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59 | |
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60 | #-Q- ada export OMP_NUM_THREADS=1 |
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61 | |
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62 | #D- Task type (computing or post-processing) |
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63 | TaskType=post-processing |
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64 | |
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65 | ######################################################################## |
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66 | |
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67 | #D- Flag to determine if this job in a standalone mode |
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68 | #D- Default : value from AA_job if any |
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69 | StandAlone=${StandAlone:=true} |
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70 | |
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71 | #D- Path to libIGCM |
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72 | #D- Default : value from AA_job if any |
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73 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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74 | |
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75 | #D- Flag to determine if rebuild process has been performed asynchronously |
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76 | #D- Possible value true or false. |
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77 | #D- If true raw files has allready been patched by rebuild job |
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78 | #D- If false create_ts will patch the raw files |
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79 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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80 | RebuildFrequency=${RebuildFrequency:=true} |
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81 | |
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82 | #D- Flag to determine atlas job's output directory |
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83 | #D- Default : value from libIGCM_post.ksh if any |
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84 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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85 | |
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86 | #D- Increased verbosity (1, 2, 3) |
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87 | #D- Default : value from AA_job if any |
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88 | Verbosity=${Verbosity:=3} |
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89 | |
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90 | #D- Low level debug : to bypass lib test checks and stack construction |
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91 | #D- Default : value from AA_job if any |
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92 | DEBUG_debug=${DEBUG_debug:=false} |
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93 | |
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94 | #D- TEMPORARY Flag to determine atmospheric resolution |
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95 | #D- Default : value from atmospheric driver if any |
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96 | RESOL_ATM=${RESOL_ATM:=ALL} |
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97 | |
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98 | #D- Flag to determine surface resolution |
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99 | #D- Default : value from surface driver if any |
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100 | RESOL_SRF=ALL |
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101 | |
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102 | #D- Flag to determine surface resolution |
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103 | #D- Default : value from surface driver if any |
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104 | RESOL_SBG=ALL |
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105 | |
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106 | #D- TEMPORARY Flag to determine ocean resolution |
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107 | #D- Default : value from ocean driver if any |
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108 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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109 | |
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110 | #D- TEMPORARY Flag to determine ice resolution |
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111 | #D- Default : value from ice driver if any |
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112 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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113 | |
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114 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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115 | #D- Default : value from ice driver if any |
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116 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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117 | |
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118 | ######################################################################## |
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119 | |
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120 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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121 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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122 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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123 | #------- |
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124 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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125 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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126 | #------- |
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127 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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128 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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129 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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130 | |
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131 | ######################################################################## |
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132 | |
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133 | #set -vx |
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134 | |
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135 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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136 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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137 | |
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138 | # ------------------------------------------------------------------ |
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139 | # Test if all was right before proceeding further |
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140 | # ------------------------------------------------------------------ |
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141 | IGCM_debug_Verif_Exit_Post |
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142 | |
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143 | if [ ${StandAlone} = true ] ; then |
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144 | CARD_DIR=${SUBMIT_DIR} |
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145 | else |
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146 | CARD_DIR=${RUN_DIR_PATH} |
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147 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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148 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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149 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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150 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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151 | fi |
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152 | |
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153 | #================================== |
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154 | # First of all |
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155 | # |
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156 | # Read libIGCM compatibility version in config.card |
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157 | # Read UserChoices section |
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158 | # Read Ensemble section |
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159 | # Read Post section |
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160 | # Define all netcdf output directories |
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161 | #================================== |
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162 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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163 | |
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164 | #================================== |
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165 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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166 | if [ X${PackDefault} = Xtrue ] ; then |
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167 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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168 | else |
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169 | config_Post_PackFrequency=NONE |
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170 | fi |
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171 | |
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172 | #================================== |
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173 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
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174 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
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175 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
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176 | fi |
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177 | |
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178 | #================================== |
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179 | # Read ListOfComponents section: |
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180 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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181 | |
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182 | #================================== |
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183 | # Read SeasonalFrequency: |
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184 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
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185 | |
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186 | # |
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187 | # Determine period for seasonnal average. Default : value from AA_job if any |
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188 | # |
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189 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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190 | # |
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191 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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192 | # |
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193 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
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194 | # |
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195 | an_fin=$(( $( IGCM_date_ConvertGregorianDateToJulian ${PeriodDateEnd} ) / 1000 )) |
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196 | an_deb=$( IGCM_date_YearDigit $(( an_fin - freq + 1 )) ) |
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197 | an_fin=$( IGCM_date_YearDigit ${an_fin} ) |
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198 | # |
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199 | # For each component selected determine which files need post-processing |
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200 | # |
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201 | for comp in ${config_ListOfComponents[*]} ; do |
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202 | # |
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203 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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204 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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205 | # |
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206 | card=${CARD_DIR}/COMP/${compname}.card |
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207 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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208 | # |
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209 | ListFilesName=${compname}_OutputFiles_List |
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210 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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211 | # |
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212 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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213 | # |
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214 | # INITIALISATION |
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215 | # |
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216 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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217 | typeset i=2 |
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218 | # |
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219 | until [ $i -gt $NbFiles ]; do |
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220 | # |
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221 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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222 | # |
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223 | if [ X${flag_post} != XNONE ] ; then |
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224 | # |
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225 | # Check if seasonal is required for this file |
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226 | # |
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227 | IGCM_card_DefineArrayFromSection ${card} ${flag_post} |
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228 | # |
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229 | # Seasonal case : If option Seasonal is not found (old cards) put SEASONAL ON by default |
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230 | # |
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231 | # variable option allready typeset above |
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232 | for option in $( eval echo \${${compname}_${flag_post}[*]} ) ; do |
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233 | if [ ${option} = Seasonal ] ; then |
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234 | FoundSeasonal=true |
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235 | IGCM_card_DefineVariableFromOption ${card} ${flag_post} Seasonal |
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236 | fi |
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237 | done |
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238 | # |
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239 | if [ ! X${FoundSeasonal} = Xtrue ] ; then |
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240 | eval ${compname}_${flag_post}_Seasonal=ON |
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241 | fi |
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242 | # |
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243 | if [ ! X$( eval echo \${${compname}_${flag_post}_Seasonal} ) = XON ] ; then |
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244 | (( i=i+3 )) |
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245 | continue |
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246 | fi |
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247 | # |
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248 | # CREATE LIST |
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249 | # |
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250 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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251 | # |
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252 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
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253 | # |
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254 | TestedFile=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${FILE}.nc |
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255 | # |
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256 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
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257 | if [ ! $? = 0 ] ; then |
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258 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
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259 | if [ ! ${RebuildFrequency} = true ] ; then |
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260 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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261 | eval set +A LISTE_PATCHES_${FILE} \$\{${compname}_Post_${FILE}_Patches[*]} |
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262 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
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263 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
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264 | if [ Xload${Patch} != X ] ; then |
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265 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
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266 | eval load${Patch}=loaded |
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267 | fi |
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268 | done |
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269 | fi |
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270 | fi |
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271 | fi |
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272 | fi |
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273 | (( i=i+3 )) |
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274 | done # until [ $i -eq $NbFiles ] |
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275 | fi |
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276 | done # for comp |
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277 | |
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278 | for comp in ${config_ListOfComponents[*]} ; do |
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279 | # |
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280 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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281 | # |
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282 | i=0 |
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283 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
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284 | # |
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285 | # Determine in which output can we find file |
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286 | # IE : Output/MO or Output/DA or ... |
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287 | # |
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288 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
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289 | case ${FlagDir} in |
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290 | 1Y) FreqDir=YE ;; |
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291 | 1M) FreqDir=MO ;; |
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292 | 5D|1D) FreqDir=DA ;; |
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293 | HF) FreqDir=HF ;; |
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294 | 3H) FreqDir=HF ;; |
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295 | INS) FreqDir=INS ;; |
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296 | esac |
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297 | # |
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298 | RESULT_SE=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${file}.nc |
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299 | # Do not redoo an existing SE |
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300 | IGCM_sys_TestFileArchive ${R_SAVE}/${comp}/Analyse/SE/${RESULT_SE} |
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301 | if [ $? = 0 ] ; then |
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302 | continue |
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303 | fi |
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304 | # |
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305 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
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306 | # |
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307 | case ${config_UserChoices_PeriodLength} in |
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308 | # For Yearly simulation : |
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309 | *Y|*y) |
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310 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | sed -e 's/[yY]//' ) |
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311 | (( an = an_deb )) |
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312 | # Initialize array |
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313 | unset liste_file_se |
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314 | unset liste_file_se_tmp |
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315 | while [ ${an} -le ${an_fin} ] ; do |
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316 | # |
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317 | an4=$(printf "%04i\n" ${an} ) |
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318 | # |
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319 | diy=$( IGCM_date_DaysInCurrentPeriod ${an4}0101 ${config_UserChoices_PeriodLength} ) |
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320 | afin=$( IGCM_date_AddDaysToGregorianDate ${an4}0101 $(( diy - 1 )) ) |
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321 | # |
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322 | date=${an4}0101_${afin} |
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323 | # |
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324 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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325 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
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326 | (( an = an + ${PeriodLengthInYears} )) |
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327 | done |
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328 | # |
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329 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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330 | IGCM_debug_Verif_Exit_Post |
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331 | |
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332 | # Apply IGCM_Patch if needed |
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333 | if [ ! ${RebuildFrequency} = true ] ; then |
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334 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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335 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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336 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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337 | IGCM_${Patch} ${file_t} |
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338 | done |
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339 | done |
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340 | fi |
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341 | fi |
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342 | |
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343 | # Search of common list of variables to be treated |
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344 | nbfile=0 |
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345 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
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346 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
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347 | (( nbfile = nbfile + 1 )) |
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348 | done |
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349 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
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350 | IGCM_sys_Rm tmpfile_ncra |
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351 | |
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352 | # detect time counter : time or time_counter ie unlimited variable |
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353 | var_unlim=$(ncdump -h ${liste_file_se_tmp[0]}|grep UNLIMITED|awk '{print $1}') |
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354 | |
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355 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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356 | # |
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357 | (( nb = ${mois} - 1 )) |
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358 | # |
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359 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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360 | IGCM_sys_ncra -O -v ${list_var_final_ncra} -d ${var_unlim},${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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361 | done |
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362 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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363 | ;; |
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364 | # For Monthly simulation : |
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365 | 1M|1m) |
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366 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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367 | # |
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368 | (( nb = ${mois} - 1 )) |
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369 | # |
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370 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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371 | # |
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372 | (( an = an_deb )) |
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373 | # Initialize array |
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374 | unset liste_file_se |
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375 | unset liste_file_se_tmp |
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376 | while [ ${an} -le ${an_fin} ] ; do |
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377 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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378 | # |
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379 | an4=$(printf "%04i\n" ${an} ) |
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380 | # |
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381 | date=${an4}${mois}01_${an4}${mois}${moisL} |
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382 | # |
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383 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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384 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
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385 | |
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386 | (( an = an + 1 )) |
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387 | done |
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388 | # |
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389 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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390 | IGCM_debug_Verif_Exit_Post |
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391 | |
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392 | # Apply IGCM_Patch if needed |
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393 | if [ ! ${RebuildFrequency} = true ] ; then |
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394 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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395 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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396 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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397 | IGCM_${Patch} ${file_t} |
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398 | done |
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399 | done |
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400 | fi |
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401 | fi |
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402 | |
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403 | # Search of common list of variables to be treated |
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404 | nbfile=0 |
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405 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
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406 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
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407 | (( nbfile = nbfile + 1 )) |
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408 | done |
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409 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
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410 | IGCM_sys_Rm tmpfile_ncra |
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411 | |
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412 | IGCM_sys_ncra -O -v ${list_var_final_ncra} ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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413 | |
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414 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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415 | done |
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416 | ;; |
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417 | *D|*d) |
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418 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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419 | # |
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420 | (( nb = ${mois} - 1 )) |
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421 | # |
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422 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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423 | # |
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424 | (( an = an_deb )) |
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425 | # Initialize array |
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426 | unset liste_file_se |
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427 | unset liste_file_se_tmp |
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428 | while [ ${an} -le ${an_fin} ] ; do |
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429 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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430 | # |
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431 | an4=$(printf "%04i\n" ${an} ) |
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432 | # |
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433 | length_d=$(( ${config_UserChoices_PeriodLength} - 1 )) |
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434 | # for one day |
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435 | if [ ${length_d} -eq 1 ] ; then |
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436 | (( length_d = 0 )) |
---|
437 | fi |
---|
438 | (( day = 1 )) |
---|
439 | while [ ${day} -le ${moisL} ] ; do |
---|
440 | day2=$(printf "%02i\n" ${day} ) |
---|
441 | day_beg=${an4}${mois}${day2} |
---|
442 | day_end=$( IGCM_date_AddDaysToGregorianDate ${day_beg} ${length_d} ) |
---|
443 | date=${an4}${mois}${day_beg}_${an4}${mois}${day_end} |
---|
444 | # |
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445 | liste_file_se[${#liste_file_se[*]}]=${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
---|
446 | liste_file_se_tmp[${#liste_file_se_tmp[*]}]=${config_UserChoices_JobName}_${date}_${file}.nc |
---|
447 | (( day = day + 1 )) |
---|
448 | done |
---|
449 | (( an = an + 1 )) |
---|
450 | done |
---|
451 | # |
---|
452 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
---|
453 | IGCM_debug_Verif_Exit_Post |
---|
454 | |
---|
455 | # Apply IGCM_Patch if needed |
---|
456 | if [ ! ${RebuildFrequency} = true ] ; then |
---|
457 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
458 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
---|
459 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
460 | IGCM_${Patch} ${file_t} |
---|
461 | done |
---|
462 | done |
---|
463 | fi |
---|
464 | fi |
---|
465 | |
---|
466 | # Search of common list of variables to be treated |
---|
467 | nbfile=0 |
---|
468 | for file_common_var in ${liste_file_se_tmp[*]} ; do |
---|
469 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncra |
---|
470 | (( nbfile = nbfile + 1 )) |
---|
471 | done |
---|
472 | list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
473 | IGCM_sys_Rm tmpfile_ncra |
---|
474 | |
---|
475 | IGCM_sys_ncra -O -v ${list_var_final_ncra} ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
---|
476 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
---|
477 | done |
---|
478 | ;; |
---|
479 | esac |
---|
480 | # |
---|
481 | |
---|
482 | # Search of common list of variables to be treated |
---|
483 | nbfile=0 |
---|
484 | for file_common_var in ${OUT_SE[*]} ; do |
---|
485 | ncdump -h ${file_common_var} | grep -E 'float|double' | cut -f 1 -d '(' | cut -f 2 -d ' ' >> tmpfile_ncrcat |
---|
486 | (( nbfile = nbfile + 1 )) |
---|
487 | done |
---|
488 | list_var_final_ncrcat=`cat tmpfile_ncrcat | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` |
---|
489 | IGCM_sys_Rm tmpfile_ncrcat |
---|
490 | |
---|
491 | IGCM_sys_ncrcat -O -v ${list_var_final_ncrcat} ${OUT_SE[*]} ${RESULT_SE} |
---|
492 | # |
---|
493 | IGCM_sys_Rm ${OUT_SE[*]} |
---|
494 | # |
---|
495 | # detect time counter : time or time_counter ie unlimited variable |
---|
496 | var_unlim=$(ncdump -h ${RESULT_SE}|grep UNLIMITED| cut -d ' ' -f 1) |
---|
497 | |
---|
498 | # Put correct climatological axis following calendar |
---|
499 | case ${config_UserChoices_CalendarType} in |
---|
500 | 360d|360_day) |
---|
501 | # 360 days |
---|
502 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15, 45, 75, 105, 135, 165, 195, 225, 255, 285, 315, 345.} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 30, 30, 60, 60, 90, 90, 120, 120, 150, 150, 180, 180, 210, 210, 240, 240, 270, 270, 300, 300, 330, 330, 360.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"360_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
503 | ;; |
---|
504 | noleap|365_day) |
---|
505 | # 365 days |
---|
506 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45, 74.5, 105, 135.5, 166, 196.5, 227.5, 258, 288.5, 319, 349.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59, 59, 90, 90, 120, 120, 151, 151, 181, 181, 212, 212, 243, 243, 273, 273, 304, 304, 334, 334, 365.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"365_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
507 | ;; |
---|
508 | all_leap|366_day) |
---|
509 | # 366 days |
---|
510 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.5, 75.5, 106, 136.5, 167, 197.5, 228.5, 259, 289.5, 320, 350.5} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 60, 60, 91, 91, 121, 121, 152, 152, 182, 182, 213, 213, 244, 244, 274, 274, 305, 305, 335, 335, 366.} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"366_day\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
511 | ;; |
---|
512 | leap|gregorian|standard) |
---|
513 | # 365.2425 days |
---|
514 | ncap2cmd="'defdim(\"tbnds\",2) ; ${var_unlim}[${var_unlim}]={15.5, 45.12125, 74.7425, 105.2425, 135.7425, 166.2425, 196.7425, 227.7425, 258.2425, 288.7425, 319.2425, 349.7425} ; ${var_unlim}_bnds[${var_unlim},tbnds]={0, 31, 31, 59.2425, 59.2425, 90.2425, 90.2425, 120.2425, 120.2425, 151.2425, 151.2425, 181.2425, 181.2425, 212.2425, 212.2425, 243.2425, 243.2425, 273.2425, 273.2425, 304.2425, 304.2425, 334.2425, 334.2425, 365.2425} ; ${var_unlim}@units=\"days since 0000-01-01 00:00:00\" ; ${var_unlim}@time_origin=\"01-JAN-0000 00:00:00\" ; ${var_unlim}@calendar=\"gregorian\" ; ${var_unlim}@bounds=\"${var_unlim}_bnds\"'" |
---|
515 | ;; |
---|
516 | esac |
---|
517 | eval IGCM_sys_ncap2 -Oh -s $ncap2cmd ${RESULT_SE} tmp.nc |
---|
518 | IGCM_sys_Rm ${RESULT_SE} |
---|
519 | IGCM_sys_Mv tmp.nc ${RESULT_SE} |
---|
520 | # |
---|
521 | eval IGCM_sys_Put_Out ${RESULT_SE} \${R_OUT_${comp}}/Analyse/SE/${RESULT_SE} |
---|
522 | [ -f ${RESULT_SE} ] && IGCM_sys_Rm ${RESULT_SE} |
---|
523 | # |
---|
524 | done |
---|
525 | done |
---|
526 | |
---|
527 | # DODS copy |
---|
528 | if [ X${config_Post_DodsCopy} = XTRUE ] ; then |
---|
529 | for comp in ${config_ListOfComponents[*]} ; do |
---|
530 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/SE |
---|
531 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/SE |
---|
532 | done |
---|
533 | fi |
---|
534 | |
---|
535 | # Temporal coverage id for atlas |
---|
536 | YEARS=${an_deb}_${an_fin} |
---|
537 | DIR_OUT=SE |
---|
538 | |
---|
539 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
540 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
541 | export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS; export DIR_OUT |
---|
542 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS,DIR_OUT" |
---|
543 | export listVarEnv; |
---|
544 | |
---|
545 | #D- |
---|
546 | # -------------------------------------------------------------------- |
---|
547 | #D- Test if all was right before ATLAS |
---|
548 | # -------------------------------------------------------------------- |
---|
549 | IGCM_debug_Verif_Exit_Post |
---|
550 | |
---|
551 | if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] || \ |
---|
552 | [ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] || \ |
---|
553 | [ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then |
---|
554 | # |
---|
555 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
556 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
557 | Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
558 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
559 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
560 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
561 | Script_Post_Output=additionnal.${PeriodDateEnd} ; |
---|
562 | IGCM_sys_QsubPost additionnal ; |
---|
563 | # |
---|
564 | elif [ ${config_UserChoices_TagName} = "IPSLCM5" ] || \ |
---|
565 | [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || \ |
---|
566 | [ ${config_UserChoices_TagName} = "IPSLCM5B" ] || \ |
---|
567 | [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || \ |
---|
568 | [ ${config_UserChoices_TagName} = "IPSLCM6" ] ; then |
---|
569 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
570 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
571 | Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
572 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
573 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
574 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
575 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
576 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
577 | # |
---|
578 | elif [ ${config_UserChoices_TagName} = "LMDZ4OR" ] || \ |
---|
579 | [ ${config_UserChoices_TagName} = "LMDZOR" ] || \ |
---|
580 | [ ${config_UserChoices_TagName} = "LMDZ4OR_v2" ] ; then |
---|
581 | # |
---|
582 | Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
583 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
584 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
585 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
586 | # |
---|
587 | elif [ ${config_UserChoices_TagName} = "LMDZ" ] ; then |
---|
588 | # |
---|
589 | Script_Post_Output=atlas_LMDZ.${PeriodDateEnd} ; |
---|
590 | IGCM_sys_QsubPost atlas_LMDZ ; |
---|
591 | # |
---|
592 | elif [ ${config_UserChoices_TagName} = "OL" ] || \ |
---|
593 | [ ${config_UserChoices_TagName} = "OL2" ] ; then |
---|
594 | # |
---|
595 | Script_Post_Output=atlas_ORCHIDEE.${PeriodDateEnd} ; |
---|
596 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
---|
597 | # |
---|
598 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] || \ |
---|
599 | [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || \ |
---|
600 | [ ${config_UserChoices_TagName} = "ORCA2_LIM3" ] ; then |
---|
601 | # |
---|
602 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
603 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
604 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] || \ |
---|
605 | [ ${config_UserChoices_TagName} = "ORCA2_LIM3_PISCES" ] ; then |
---|
606 | # |
---|
607 | Script_Post_Output=atlas_ORCA_LIM.${PeriodDateEnd} ; |
---|
608 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
---|
609 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
610 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
611 | elif [ ${config_UserChoices_TagName} = "ORCA2_OFF_PISCES" ] ; then |
---|
612 | # |
---|
613 | Script_Post_Output=atlas_PISCES.${PeriodDateEnd} ; |
---|
614 | IGCM_sys_QsubPost atlas_PISCES ; |
---|
615 | # |
---|
616 | fi |
---|
617 | |
---|
618 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
619 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|