[622] | 1 | #-Q- curie ###################### |
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| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 3 | #-Q- curie ###################### |
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[906] | 4 | #-Q- curie #MSUB -r TS # Nom du job |
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[622] | 5 | #-Q- curie #MSUB -eo |
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| 6 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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[880] | 7 | #-Q- curie #MSUB -T 80000 # Limite de temps elapsed du job |
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[1154] | 8 | #-Q- curie #MSUB -q ::default_node:: |
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[704] | 9 | #-Q- curie #MSUB -Q normal |
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[837] | 10 | #-Q- curie #MSUB -A ::default_project:: |
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[681] | 11 | #-Q- curie set +x |
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[770] | 12 | #-Q- ada #!/bin/ksh |
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| 13 | #-Q- ada ####################### |
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[929] | 14 | #-Q- ada ## ADA IDRIS ## |
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[770] | 15 | #-Q- ada ####################### |
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[848] | 16 | #-Q- ada # @ job_type = serial |
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| 17 | #-Q- ada # @ requirements = (Feature == "prepost") |
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[770] | 18 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
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| 19 | #-Q- ada # @ wall_clock_limit = 20:00:00 |
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| 20 | #-Q- ada # Nom du travail LoadLeveler |
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| 21 | #-Q- ada # @ job_name = TS |
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| 22 | #-Q- ada # Fichier de sortie standard du travail |
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| 23 | #-Q- ada # @ output = $(job_name).$(jobid) |
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| 24 | #-Q- ada # Fichier de sortie d'erreur du travail |
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| 25 | #-Q- ada # @ error = $(job_name).$(jobid) |
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| 26 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 27 | #-Q- ada # @ notification = error |
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[1201] | 28 | #-Q- ada # @ environment = $DEBUG_debug ; $BigBrother ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $POST_DIR ; $Script_Post_Output ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateEnd ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; wall_clock_limit=$(wall_clock_limit) |
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[770] | 29 | #-Q- ada # @ queue |
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[287] | 30 | #-Q- lxiv8 ###################### |
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| 31 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 32 | #-Q- lxiv8 ###################### |
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| 33 | #-Q- lxiv8 #PBS -N TS |
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| 34 | #-Q- lxiv8 #PBS -m a |
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| 35 | #-Q- lxiv8 #PBS -j oe |
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| 36 | #-Q- lxiv8 #PBS -q medium |
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| 37 | #-Q- lxiv8 #PBS -o TS.$$ |
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| 38 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[1184] | 39 | #-Q- ifort_CICLAD ###################### |
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| 40 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
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| 41 | #-Q- ifort_CICLAD ###################### |
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| 42 | #-Q- ifort_CICLAD #PBS -N TS |
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| 43 | #-Q- ifort_CICLAD #PBS -m a |
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| 44 | #-Q- ifort_CICLAD #PBS -j oe |
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| 45 | #-Q- ifort_CICLAD #PBS -q h12 |
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| 46 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
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[2] | 47 | #-Q- default #!/bin/ksh |
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| 48 | #-Q- default ################## |
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| 49 | #-Q- default ## DEFAULT HOST ## |
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| 50 | #-Q- default ################## |
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| 51 | |
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[373] | 52 | #************************************************************** |
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| 53 | # Author: Sebastien Denvil |
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| 54 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 55 | # $Revision:: $ Revision of last commit |
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| 56 | # $Author:: $ Author of last commit |
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| 57 | # $Date:: $ Date of last commit |
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[108] | 58 | # IPSL (2006) |
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| 59 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 60 | # |
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| 61 | #************************************************************** |
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[108] | 62 | |
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| 63 | #set -eu |
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[2] | 64 | #set -vx |
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| 65 | |
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| 66 | date |
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| 67 | |
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[770] | 68 | #-Q- ada export OMP_NUM_THREADS=1 |
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[2] | 69 | |
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[712] | 70 | #D- Task type (computing or post-processing) |
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| 71 | TaskType=post-processing |
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| 72 | |
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[2] | 73 | ######################################################################## |
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| 74 | |
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| 75 | #D- Flag to determine if this job in a standalone mode |
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| 76 | #D- Default : value from AA_job if any |
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| 77 | StandAlone=${StandAlone:=true} |
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| 78 | |
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[554] | 79 | #D- Path to libIGCM |
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[206] | 80 | #D- Default : value from AA_job if any |
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[229] | 81 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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[206] | 82 | |
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| 83 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
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[213] | 84 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
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[209] | 85 | CompletedFlag=${CompletedFlag:=} |
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[135] | 86 | |
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[213] | 87 | #D- Flag to determine task type this script will perform. |
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| 88 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
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| 89 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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[257] | 90 | TsTask=${TsTask:=2D} |
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[267] | 91 | if [ X${TsTask} = Xempty ] ; then |
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[785] | 92 | TsTask="" |
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[267] | 93 | fi |
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[213] | 94 | |
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| 95 | #D- Flag to determine if rebuild process has been performed asynchronously |
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[906] | 96 | #D- Possible value true or false. |
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[213] | 97 | #D- If true raw files has allready been patched by rebuild job |
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| 98 | #D- If false create_ts will patch the raw files |
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| 99 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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| 100 | RebuildFrequency=${RebuildFrequency:=true} |
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| 101 | |
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[2] | 102 | #D- Flag to determine job's output directory |
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| 103 | #D- Default : value from libIGCM_post.ksh if any |
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[370] | 104 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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[2] | 105 | |
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| 106 | #D- Increased verbosity (1, 2, 3) |
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| 107 | #D- Default : value from AA_job if any |
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| 108 | Verbosity=${Verbosity:=3} |
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| 109 | |
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| 110 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 111 | #D- Default : value from AA_job if any |
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| 112 | DEBUG_debug=${DEBUG_debug:=false} |
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| 113 | |
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| 114 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 115 | #D- Default : value from atmospheric driver if any |
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[254] | 116 | RESOL_ATM=ALL |
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[2] | 117 | |
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[257] | 118 | #D- Flag to determine surface resolution |
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| 119 | #D- Default : value from surface driver if any |
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| 120 | RESOL_SRF=ALL |
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| 121 | |
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| 122 | #D- Flag to determine surface resolution |
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| 123 | #D- Default : value from surface driver if any |
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| 124 | RESOL_SBG=ALL |
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| 125 | |
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[2] | 126 | #D- TEMPORARY Flag to determine ocean resolution |
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| 127 | #D- Default : value from ocean driver if any |
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| 128 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 129 | |
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| 130 | #D- TEMPORARY Flag to determine ice resolution |
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| 131 | #D- Default : value from ice driver if any |
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| 132 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 133 | |
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[178] | 134 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 135 | #D- Default : value from ice driver if any |
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| 136 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 137 | |
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[2] | 138 | ######################################################################## |
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| 139 | |
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[108] | 140 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 141 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 142 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 143 | #------- |
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| 144 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[731] | 145 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[832] | 146 | #------- |
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[1192] | 147 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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| 148 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 149 | #------- |
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[832] | 150 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 151 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 152 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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[2] | 153 | |
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| 154 | ######################################################################## |
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| 155 | |
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| 156 | #set -vx |
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| 157 | |
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| 158 | # Useful cleaning function |
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[906] | 159 | MENAGE () |
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[81] | 160 | { |
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[785] | 161 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
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[2] | 162 | } |
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| 163 | |
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| 164 | ######################################################################## |
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| 165 | |
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[436] | 166 | # ------------------------------------------------------------------ |
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| 167 | # Test if all was right before proceeding further |
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| 168 | # ------------------------------------------------------------------ |
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[1206] | 169 | IGCM_debug_Verif_Exit |
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[436] | 170 | |
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[2] | 171 | if [ ${StandAlone} = true ] ; then |
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[785] | 172 | CARD_DIR=${SUBMIT_DIR} |
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[2] | 173 | else |
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[785] | 174 | CARD_DIR=${RUN_DIR_PATH} |
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[903] | 175 | |
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[785] | 176 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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[903] | 177 | |
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[785] | 178 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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[903] | 179 | |
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[785] | 180 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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[903] | 181 | |
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[785] | 182 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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[2] | 183 | fi |
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| 184 | |
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[591] | 185 | #================================== |
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[2] | 186 | # First of all |
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| 187 | # |
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[727] | 188 | # Read libIGCM compatibility version in config.card |
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| 189 | # Read UserChoices section |
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| 190 | # Read Ensemble section |
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| 191 | # Read Post section |
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| 192 | # Define all netcdf output directories |
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[591] | 193 | #================================== |
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[727] | 194 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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[591] | 195 | |
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[1198] | 196 | # ------------------------------------------------------------------ |
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| 197 | # Activate BigBrother so as to supervise this job |
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| 198 | # ------------------------------------------------------------------ |
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| 199 | IGCM_debug_BigBro_Initialize |
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| 200 | |
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[591] | 201 | #================================== |
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[633] | 202 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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| 203 | if [ X${PackDefault} = Xtrue ] ; then |
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| 204 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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| 205 | else |
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| 206 | config_Post_PackFrequency=NONE |
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| 207 | fi |
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[591] | 208 | |
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| 209 | #================================== |
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| 210 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
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| 211 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
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| 212 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
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| 213 | fi |
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| 214 | |
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[2] | 215 | # |
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[149] | 216 | # Determine component to take care of depending on kind of task create_ts will perform |
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[2] | 217 | # |
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[392] | 218 | [ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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[2] | 219 | # |
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[149] | 220 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
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| 221 | # |
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[309] | 222 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
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[301] | 223 | |
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[2] | 224 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 225 | # |
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| 226 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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[149] | 227 | # |
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| 228 | # Determine Dimension of the produced time series : 2D or 3D |
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| 229 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
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[785] | 230 | Dimension=2D |
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[149] | 231 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
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[785] | 232 | Dimension=3D |
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[149] | 233 | else |
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[785] | 234 | Dimension="" |
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[149] | 235 | fi |
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[2] | 236 | |
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[441] | 237 | # ------------------------------------------------------------------ |
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| 238 | #D- Test if all was right before entering the loop |
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| 239 | # ------------------------------------------------------------------ |
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[1206] | 240 | IGCM_debug_Verif_Exit |
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[149] | 241 | |
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[2] | 242 | ######################################################################## |
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| 243 | # Depending on requested time series fill following variables : |
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| 244 | # |
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| 245 | # - LISTE_FILE_${comp}[*] |
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| 246 | # - LISTE_VARS_${file}[*] |
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| 247 | # - LISTE_AXIS_${file}[*] |
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| 248 | # - LISTE_PATCH_${file}[*] |
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| 249 | ######################################################################## |
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| 250 | |
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| 251 | # |
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| 252 | # For each selected component determine which files need post-processing |
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| 253 | # |
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| 254 | DoJob=false |
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| 255 | for comp in ${config_ListOfComponents[*]} ; do |
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[785] | 256 | # |
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| 257 | ActiveComp=false |
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| 258 | # |
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| 259 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 260 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 261 | # |
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| 262 | card=${CARD_DIR}/COMP/${compname}.card |
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| 263 | |
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| 264 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 265 | # |
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| 266 | ListFilesName=${compname}_OutputFiles_List |
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| 267 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 268 | # |
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| 269 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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[2] | 270 | # |
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[785] | 271 | #IGCM_debug_Print 1 "Component : ${compname}" |
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[2] | 272 | # |
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[785] | 273 | # INITIALISATION |
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[2] | 274 | # |
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[785] | 275 | typeset i |
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| 276 | if [ ${FlagToRead} ] ; then |
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| 277 | ((NbFiles=${FlagToRead})) |
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| 278 | ((i=${NbFiles})) |
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| 279 | else |
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| 280 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 281 | i=2 |
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| 282 | fi |
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[2] | 283 | # |
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[785] | 284 | until [ $i -gt $NbFiles ]; do |
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| 285 | # |
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| 286 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 287 | # |
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| 288 | if [ X${flag_post} != XNONE ] ; then |
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| 289 | # |
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| 290 | # For each comp and each file who needs post-processing |
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| 291 | # determine which variables need time series. |
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| 292 | # |
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| 293 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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| 294 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
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| 295 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
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| 296 | # |
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| 297 | # If TimeSeriesVars list is empty we skip |
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| 298 | # |
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| 299 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
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| 300 | # |
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| 301 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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| 302 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
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| 303 | (( i=i+3 )) |
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| 304 | continue |
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| 305 | # |
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| 306 | fi |
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| 307 | # |
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| 308 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
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| 309 | # |
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| 310 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
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| 311 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
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| 312 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
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| 313 | (( i=i+3 )) |
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| 314 | continue |
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| 315 | fi |
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| 316 | # |
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| 317 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
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| 318 | # |
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| 319 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
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| 320 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
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| 321 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
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| 322 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
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| 323 | (( i=i+3 )) |
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| 324 | continue |
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| 325 | fi |
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| 326 | fi |
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| 327 | # |
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| 328 | # Now on we know we have things to do |
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| 329 | # |
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[236] | 330 | |
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[785] | 331 | # |
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| 332 | # We need coordinates axis to properly fill produced time series |
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| 333 | # |
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| 334 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
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| 335 | # |
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| 336 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
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| 337 | # |
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| 338 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
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| 339 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
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| 340 | (( i=i+3 )) |
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| 341 | continue |
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| 342 | # |
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| 343 | fi |
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| 344 | # |
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| 345 | # We need LIST of variables not allready produced (useful for standalone mode) |
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| 346 | # |
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| 347 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
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| 348 | case ${FlagDir} in |
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| 349 | *Y) TS_Dir=TS_YE ;; |
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| 350 | *M) TS_Dir=TS_MO ;; |
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| 351 | *D) TS_Dir=TS_DA ;; |
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| 352 | HF) TS_Dir=TS_HF ;; |
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| 353 | 3H) TS_Dir=TS_HF ;; |
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| 354 | INS) TS_Dir=TS_INS ;; |
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| 355 | esac |
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| 356 | # |
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| 357 | count=0 |
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| 358 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
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| 359 | # |
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| 360 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
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| 361 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
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| 362 | # |
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| 363 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
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| 364 | if [ ! $? = 0 ] ; then |
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| 365 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
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| 366 | ActiveComp=true |
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| 367 | (( count = count + 1 )) |
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| 368 | fi |
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| 369 | done |
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| 370 | # |
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| 371 | if [ ${count} -gt 0 ] ; then |
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| 372 | # |
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| 373 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
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| 374 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
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| 375 | # |
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| 376 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
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| 377 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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| 378 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
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| 379 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
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| 380 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
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| 381 | if [ Xload${Patch} != X ] ; then |
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| 382 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
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| 383 | eval load${Patch}=loaded |
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| 384 | fi |
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| 385 | done |
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| 386 | fi |
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| 387 | fi |
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| 388 | fi |
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| 389 | fi |
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| 390 | (( i=i+3 )) |
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| 391 | done |
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| 392 | fi |
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| 393 | # |
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| 394 | if [ ${ActiveComp} = true ] ; then |
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| 395 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
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| 396 | fi |
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[2] | 397 | done |
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| 398 | |
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| 399 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
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| 400 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
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| 401 | |
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| 402 | ######################################################################## |
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| 403 | # |
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| 404 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
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| 405 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
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| 406 | # |
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| 407 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
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| 408 | # - especially for IDRiS |
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| 409 | # - no special protection against "command too long" ! |
---|
| 410 | # - libIGCM_sys should handle that or modify following code part |
---|
| 411 | # |
---|
| 412 | ######################################################################## |
---|
| 413 | |
---|
| 414 | if [ ${StandAlone} != true ] ; then |
---|
[785] | 415 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
---|
| 416 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
---|
| 417 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
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[2] | 418 | |
---|
[785] | 419 | #if [ X${Running_Flag} = Xy ] ; then |
---|
| 420 | # # Time Series Job allready running |
---|
| 421 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
---|
| 422 | # exit |
---|
| 423 | #fi |
---|
| 424 | # Now run.card know we are running |
---|
[149] | 425 | |
---|
| 426 | |
---|
| 427 | |
---|
| 428 | |
---|
[785] | 429 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
[149] | 430 | |
---|
| 431 | |
---|
| 432 | |
---|
| 433 | |
---|
| 434 | |
---|
[785] | 435 | # Get information from last execution |
---|
| 436 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
| 437 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
| 438 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
[2] | 439 | fi |
---|
| 440 | |
---|
| 441 | # Is it the first submission or not ? |
---|
[149] | 442 | |
---|
| 443 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
---|
[785] | 444 | # First Time Series Submission |
---|
| 445 | FIRST_PASS=TRUE |
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| 446 | Length=$( IGCM_date_DaysInPreviousPeriod ${DateBegin} ${config_UserChoices_PeriodLength} begin) |
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| 447 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
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[2] | 448 | else |
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[785] | 449 | # Last Completed Time Series |
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| 450 | FIRST_PASS=FALSE |
---|
| 451 | DATE_FIN_JOB_B=${CompletedFlag} |
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| 452 | date=${DateBegin}_${DATE_FIN_JOB_B} |
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[1038] | 453 | # |
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[785] | 454 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 455 | # |
---|
| 456 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 457 | # |
---|
| 458 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 459 | # |
---|
| 460 | unset liste_file |
---|
| 461 | # |
---|
| 462 | file_path=${R_SAVE}/${comp}/Analyse |
---|
| 463 | # |
---|
| 464 | i=0 |
---|
| 465 | file=${NULL_STR} |
---|
| 466 | # |
---|
| 467 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 468 | # |
---|
| 469 | # Determine in which output can we find file |
---|
| 470 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
| 471 | # |
---|
| 472 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 473 | case ${FlagDir} in |
---|
| 474 | *Y) TS_Dir=TS_YE ;; |
---|
| 475 | *M) TS_Dir=TS_MO ;; |
---|
| 476 | *D) TS_Dir=TS_DA ;; |
---|
| 477 | HF) TS_Dir=TS_HF ;; |
---|
| 478 | 3H) TS_Dir=TS_HF ;; |
---|
| 479 | INS) TS_Dir=TS_INS ;; |
---|
| 480 | esac |
---|
| 481 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
[2] | 482 | # |
---|
[1033] | 483 | IGCM_sys_TestFileArchive ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 484 | if [ $? = 0 ] ; then |
---|
| 485 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 486 | else |
---|
| 487 | IGCM_debug_Print 1 "WARNING ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc dont exist" |
---|
| 488 | fi |
---|
[785] | 489 | # |
---|
| 490 | done |
---|
[2] | 491 | done |
---|
[785] | 492 | if [ X${file} != X${NULL_STR} ] ; then |
---|
| 493 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
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[1206] | 494 | IGCM_debug_Verif_Exit |
---|
[785] | 495 | fi |
---|
| 496 | done |
---|
| 497 | # |
---|
| 498 | LEVEL=0 |
---|
| 499 | # |
---|
[2] | 500 | fi |
---|
| 501 | |
---|
| 502 | ######################################################################## |
---|
| 503 | # |
---|
| 504 | # DEFINE LOOP PARAMETERS |
---|
| 505 | # |
---|
| 506 | ######################################################################## |
---|
| 507 | |
---|
| 508 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
| 509 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
| 510 | |
---|
| 511 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
| 512 | |
---|
| 513 | if [ ${DoJob} = true ] ; then |
---|
[785] | 514 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
| 515 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
| 516 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_COUNT} ${config_UserChoices_PeriodLength} ) |
---|
| 517 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
| 518 | done |
---|
[2] | 519 | else |
---|
[785] | 520 | NBRE_FILE_TOT=0 |
---|
[2] | 521 | fi |
---|
| 522 | |
---|
| 523 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
[906] | 524 | NBRE_TOUR=1 |
---|
[2] | 525 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
[906] | 526 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
[2] | 527 | else |
---|
[785] | 528 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
[2] | 529 | fi |
---|
| 530 | |
---|
| 531 | CURRENT_LOOP=1 |
---|
| 532 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
[906] | 533 | # WE HAVE 3 LEVELS |
---|
[2] | 534 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 535 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 536 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 537 | |
---|
| 538 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
| 539 | |
---|
[906] | 540 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
[785] | 541 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 542 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
[2] | 543 | |
---|
[785] | 544 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
| 545 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
| 546 | else |
---|
| 547 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 548 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 549 | fi |
---|
[2] | 550 | |
---|
[785] | 551 | DATE_FIN=${PeriodDateEnd} |
---|
| 552 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
[2] | 553 | |
---|
[785] | 554 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 555 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
[2] | 556 | |
---|
[785] | 557 | LEVEL=1 |
---|
[906] | 558 | DEPOT="TRUE" |
---|
[785] | 559 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
| 560 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 561 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
[2] | 562 | |
---|
[785] | 563 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
| 564 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 565 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 566 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
| 567 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
[2] | 568 | else |
---|
[785] | 569 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
| 570 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 571 | fi |
---|
[2] | 572 | |
---|
[785] | 573 | (( TotLength = 0 )) |
---|
| 574 | COMPTEUR=1 |
---|
| 575 | DATE_LOOP=${DATE_COURANTE} |
---|
[2] | 576 | |
---|
[785] | 577 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
| 578 | # |
---|
| 579 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 580 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
| 581 | (( TotLength = TotLength + Length )) |
---|
| 582 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 583 | # |
---|
| 584 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 585 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
[2] | 586 | |
---|
[785] | 587 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 588 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 589 | DEPOT="FALSE" |
---|
| 590 | LEVEL=2 |
---|
| 591 | else |
---|
| 592 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 593 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
| 594 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
[2] | 595 | |
---|
[785] | 596 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
| 597 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 598 | DATE_FIN=${PeriodDateEnd} |
---|
| 599 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
[2] | 600 | |
---|
[785] | 601 | LEVEL=3 |
---|
| 602 | DEPOT="TRUE" |
---|
| 603 | FLAG_B="TRUE" |
---|
| 604 | fi |
---|
[2] | 605 | |
---|
[785] | 606 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
| 607 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 608 | # |
---|
| 609 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 610 | # |
---|
| 611 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 612 | # |
---|
| 613 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 614 | # |
---|
| 615 | i=0 |
---|
| 616 | # |
---|
| 617 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 618 | # |
---|
| 619 | # Determine in which output we can find file |
---|
| 620 | # IE : Output/MO or Output/DA or ... |
---|
| 621 | # |
---|
| 622 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 623 | case ${FlagDir} in |
---|
| 624 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
| 625 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
| 626 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
| 627 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 628 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 629 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
| 630 | *) IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
[1205] | 631 | IGCM_debug_Exit "Job create_ts" ;; |
---|
[785] | 632 | esac |
---|
[2] | 633 | |
---|
[785] | 634 | # Initialize array |
---|
| 635 | unset liste_file |
---|
| 636 | unset liste_file_tmp |
---|
| 637 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
[2] | 638 | |
---|
[785] | 639 | COMPTEUR=1 |
---|
[817] | 640 | MissingFile=FALSE |
---|
[785] | 641 | DATE_LOOP=${DATE_COURANTE} |
---|
[2] | 642 | |
---|
[785] | 643 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
| 644 | # |
---|
| 645 | Length1=$( IGCM_date_DaysInPreviousPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} end) |
---|
| 646 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
[2] | 647 | |
---|
[785] | 648 | Length2=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 649 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
[2] | 650 | |
---|
[817] | 651 | IGCM_sys_TestFileArchive ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 652 | if [ $? = 0 ] ; then |
---|
| 653 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 654 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 655 | else |
---|
| 656 | IGCM_debug_Print 1 "WARNING ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc dont exist" |
---|
| 657 | MissingFile=TRUE |
---|
| 658 | fi |
---|
[785] | 659 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 660 | # |
---|
| 661 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
[817] | 662 | |
---|
| 663 | # We skip this file type if one of them is missing. |
---|
| 664 | if [ "${MissingFile}" = "TRUE" ] ; then |
---|
| 665 | IGCM_debug_Print 1 "WARNING We skip ${file} type processing" |
---|
| 666 | continue |
---|
| 667 | fi |
---|
| 668 | |
---|
[785] | 669 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
[2] | 670 | |
---|
[785] | 671 | # Get selected files |
---|
| 672 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
[1206] | 673 | IGCM_debug_Verif_Exit |
---|
[2] | 674 | |
---|
[785] | 675 | # Apply IGCM_Patch if needed |
---|
| 676 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
| 677 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
[906] | 678 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
[785] | 679 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 680 | IGCM_${Patch} ${file_t} |
---|
[1206] | 681 | IGCM_debug_Verif_Exit |
---|
[785] | 682 | done |
---|
| 683 | done |
---|
| 684 | fi |
---|
| 685 | fi |
---|
[2] | 686 | |
---|
[785] | 687 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
| 688 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
| 689 | Length=$( IGCM_date_DaysInPreviousPeriod ${DATE_COURANTE} ${config_UserChoices_PeriodLength} end) |
---|
| 690 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
| 691 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
| 692 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
[514] | 693 | |
---|
[785] | 694 | liste_coord=" " |
---|
| 695 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
| 696 | liste_coord=${liste_coord}${axis}"," |
---|
| 697 | done |
---|
[287] | 698 | |
---|
[785] | 699 | # Time axis must be the last dimension |
---|
| 700 | time_axis=${axis} |
---|
[388] | 701 | |
---|
[785] | 702 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
| 703 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 704 | # |
---|
[1033] | 705 | # We skip variables not in the first file of the list. |
---|
| 706 | # Seems overkill to test thel all... but will do if needed |
---|
| 707 | ncdump -hv ${var} ${liste_file_tmp[0]} > /dev/null 2>&1 |
---|
| 708 | if [ ! $? = 0 ] ; then |
---|
| 709 | IGCM_debug_Print 1 "WARNING We skip ${var}, not present within ${liste_file_tmp[0]}" |
---|
| 710 | continue |
---|
| 711 | fi |
---|
| 712 | # |
---|
[785] | 713 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
| 714 | # WE CONCATENATE WITH EXISTING FILES |
---|
| 715 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
| 716 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
| 717 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
---|
[1206] | 718 | IGCM_debug_Verif_Exit |
---|
[785] | 719 | # |
---|
| 720 | IGCM_sys_Rm ${file1} |
---|
| 721 | if [ ! "${DEPOT}" = "TRUE" ] ; then |
---|
| 722 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 723 | # "${file1} = file_before ? |
---|
| 724 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
| 725 | fi |
---|
| 726 | else |
---|
| 727 | # OR NOT |
---|
[1047] | 728 | file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 729 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${file_out} |
---|
[1206] | 730 | IGCM_debug_Verif_Exit |
---|
[785] | 731 | fi |
---|
| 732 | |
---|
| 733 | # |
---|
| 734 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
[1042] | 735 | # YEARLY AVERAGE DERIVED FROM MONTHLY MEAN |
---|
[785] | 736 | if ( [ ${FlagDir} = "1M" ] && [ -f ${file_out} ] ) ; then |
---|
| 737 | file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc |
---|
| 738 | file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc |
---|
| 739 | # |
---|
| 740 | # Compute yearly average considering calendar |
---|
[1145] | 741 | IGCM_sys_cdo yearmonmean -selvar,${var} ${file_out} ${file_out_YE} |
---|
[785] | 742 | # Extract all ancillary variables except $var, they will be appended after the cdo command |
---|
| 743 | # Needed because cdo applies calculs on all variables |
---|
| 744 | IGCM_sys_ncks -Oh -x -v ${var} ${file_out} ${file_out_YE%%.nc}_tmp1.nc |
---|
| 745 | # This will remove the time axis because cdo rewrites severely with only considered useful variables |
---|
| 746 | IGCM_sys_cdo -mulc,1 ${file_out_YE%%.nc}_tmp1.nc ${file_out_YE%%.nc}_tmp2.nc 2>/dev/null |
---|
| 747 | if [ $? -eq 0 ] ; then |
---|
| 748 | # Now append all ancillary variables if previous cdo operator ok |
---|
| 749 | IGCM_sys_ncks -h -A ${file_out_YE%%.nc}_tmp2.nc ${file_out_YE} |
---|
| 750 | fi |
---|
| 751 | |
---|
| 752 | # Put global history attribut |
---|
| 753 | IGCM_sys_ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" ${file_out_YE} |
---|
[1206] | 754 | IGCM_debug_Verif_Exit |
---|
[785] | 755 | # |
---|
| 756 | eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE} |
---|
| 757 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE} |
---|
| 758 | IGCM_sys_Rm ${file_out_YE%%.nc}_tmp*.nc |
---|
| 759 | fi |
---|
[1042] | 760 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
| 761 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 762 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
[785] | 763 | # |
---|
[1042] | 764 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 765 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
| 766 | if [ ! "X${file1}" = "X" ] ; then |
---|
| 767 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
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| 768 | fi |
---|
| 769 | # |
---|
[1039] | 770 | [ -f ${file_out} ] && IGCM_sys_Rm ${file_out} |
---|
[785] | 771 | # |
---|
| 772 | fi |
---|
| 773 | # |
---|
[1038] | 774 | done # for var in ${liste_var} ; do |
---|
[785] | 775 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
[1038] | 776 | done # for file in ${liste_file_brut} do |
---|
| 777 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 778 | # GO AHEAD IN DEEPEST LOOP |
---|
| 779 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
[1038] | 780 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
[2] | 781 | # FINISH |
---|
| 782 | |
---|
| 783 | # DODS copy |
---|
| 784 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 785 | for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do |
---|
| 786 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 787 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
| 788 | done |
---|
[2] | 789 | done |
---|
| 790 | |
---|
[1112] | 791 | export DEBUG_debug; export BigBrother ; export libIGCM; export SUBMIT_DIR; export POST_DIR; export Script_Output ; |
---|
| 792 | export StandAlone ; export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; |
---|
| 793 | export RESOL_SBG |
---|
| 794 | listVarEnv="DEBUG_debug,BigBrother,libIGCM,SUBMIT_DIR,POST_DIR,Script_Post_Output,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
---|
[2] | 795 | export listVarEnv |
---|
| 796 | |
---|
| 797 | #D- |
---|
| 798 | # -------------------------------------------------------------------- |
---|
| 799 | #D- Test if all was right |
---|
| 800 | # -------------------------------------------------------------------- |
---|
[1206] | 801 | IGCM_debug_Verif_Exit |
---|
[2] | 802 | # -------------------------------------------------------------------- |
---|
| 803 | #D- Submit MONITORING |
---|
| 804 | # -------------------------------------------------------------------- |
---|
[414] | 805 | if ( [ X${TsTask} = X2D ] || [ X${TsTask} = X3D ] || [ X${TsTask} = X ] ) ; then |
---|
[785] | 806 | Script_Post_Output=monitoring.${PeriodDateEnd} |
---|
| 807 | IGCM_sys_QsubPost monitoring |
---|
[387] | 808 | fi |
---|
[2] | 809 | |
---|
| 810 | #D- |
---|
| 811 | # -------------------------------------------------------------------- |
---|
| 812 | #D- Update the run.card |
---|
| 813 | # -------------------------------------------------------------------- |
---|
| 814 | if [ ${StandAlone} != true ] ; then |
---|
[785] | 815 | # Put in run.card end period of time series |
---|
| 816 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
| 817 | # We have finish the job ! |
---|
| 818 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
[2] | 819 | fi |
---|
[203] | 820 | |
---|
[590] | 821 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[203] | 822 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
| 823 | |
---|
[1198] | 824 | # ------------------------------------------------------------------ |
---|
| 825 | # Finalize BigBrother to inform that the jobs end |
---|
| 826 | # ------------------------------------------------------------------ |
---|
| 827 | IGCM_debug_BigBro_Finalize |
---|
| 828 | |
---|
[2] | 829 | date |
---|