[622] | 1 | #-Q- curie ###################### |
---|
| 2 | #-Q- curie ## CURIE TGCC/CEA ## |
---|
| 3 | #-Q- curie ###################### |
---|
[906] | 4 | #-Q- curie #MSUB -r TS # Nom du job |
---|
[1468] | 5 | #-Q- curie #MSUB -o TS.out_%I |
---|
| 6 | #-Q- curie #MSUB -e TS.out_%I |
---|
[622] | 7 | #-Q- curie #MSUB -n 1 # Reservation du processus |
---|
[880] | 8 | #-Q- curie #MSUB -T 80000 # Limite de temps elapsed du job |
---|
[1154] | 9 | #-Q- curie #MSUB -q ::default_node:: |
---|
[1274] | 10 | #-Q- curie #MSUB -c ::default_core:: |
---|
[704] | 11 | #-Q- curie #MSUB -Q normal |
---|
[837] | 12 | #-Q- curie #MSUB -A ::default_project:: |
---|
[681] | 13 | #-Q- curie set +x |
---|
[1433] | 14 | #-Q- irene ###################### |
---|
| 15 | #-Q- irene ## IRENE TGCC/CEA ## |
---|
| 16 | #-Q- irene ###################### |
---|
| 17 | #-Q- irene #MSUB -r TS # Job name |
---|
[1468] | 18 | #-Q- irene #MSUB -o TS.out_%I |
---|
| 19 | #-Q- irene #MSUB -e TS.out_%I |
---|
[1433] | 20 | #-Q- irene #MSUB -n 1 # Number of cores |
---|
| 21 | #-Q- irene #MSUB -T 80000 # Maximum elapsed time |
---|
[1468] | 22 | #-Q- irene #MSUB -q ::default_node:: |
---|
| 23 | #-Q- irene #MSUB -c ::default_core:: |
---|
[1433] | 24 | #-Q- irene #MSUB -Q normal |
---|
[1468] | 25 | #-Q- irene #MSUB -A ::default_post_project:: |
---|
[1460] | 26 | #-Q- irene #MSUB -m store,work,scratch |
---|
[1433] | 27 | #-Q- irene set +x |
---|
[1525] | 28 | #-Q- irene-amd ###################### |
---|
| 29 | #-Q- irene-amd ## IRENE TGCC/CEA ## |
---|
| 30 | #-Q- irene-amd ###################### |
---|
| 31 | #-Q- irene-amd #MSUB -r TS # Job name |
---|
| 32 | #-Q- irene-amd #MSUB -o TS.out_%I |
---|
| 33 | #-Q- irene-amd #MSUB -e TS.out_%I |
---|
| 34 | #-Q- irene-amd #MSUB -n 1 # Number of cores |
---|
| 35 | #-Q- irene-amd #MSUB -T 80000 # Maximum elapsed time |
---|
| 36 | #-Q- irene-amd #MSUB -q ::default_node:: |
---|
| 37 | #-Q- irene-amd #MSUB -c ::default_core:: |
---|
| 38 | #-Q- irene-amd #MSUB -Q normal |
---|
| 39 | #-Q- irene-amd #MSUB -A ::default_post_project:: |
---|
| 40 | #-Q- irene-amd #MSUB -m store,work,scratch |
---|
| 41 | #-Q- irene-amd set +x |
---|
[1490] | 42 | #-Q- jeanzay #!/bin/ksh |
---|
| 43 | #-Q- jeanzay ###################### |
---|
| 44 | #-Q- jeanzay ## JEANZAY IDRIS ## |
---|
| 45 | #-Q- jeanzay ###################### |
---|
| 46 | #-Q- jeanzay #SBATCH --job-name=TS # Job Name |
---|
| 47 | #-Q- jeanzay #SBATCH --output=TS.out_%I # standard output |
---|
| 48 | #-Q- jeanzay #SBATCH --error=TS.out_%I # error output |
---|
[1494] | 49 | #-Q- jeanzay #SBATCH -N 1 # Number of core |
---|
| 50 | #-Q- jeanzay #SBATCH --partition=prepost # Post-processing partition |
---|
[1490] | 51 | #-Q- jeanzay #SBATCH --time=10:00:00 # Wall clock limit (seconds) |
---|
| 52 | #-Q- jeanzay #SBATCH --account ::default_project::@cpu |
---|
| 53 | #-Q- jeanzay set +x |
---|
[770] | 54 | #-Q- ada #!/bin/ksh |
---|
| 55 | #-Q- ada ####################### |
---|
[929] | 56 | #-Q- ada ## ADA IDRIS ## |
---|
[770] | 57 | #-Q- ada ####################### |
---|
[1409] | 58 | #-Q- ada # @ job_type = mpich |
---|
[848] | 59 | #-Q- ada # @ requirements = (Feature == "prepost") |
---|
[770] | 60 | #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss |
---|
| 61 | #-Q- ada # @ wall_clock_limit = 20:00:00 |
---|
| 62 | #-Q- ada # Nom du travail LoadLeveler |
---|
| 63 | #-Q- ada # @ job_name = TS |
---|
| 64 | #-Q- ada # Fichier de sortie standard du travail |
---|
| 65 | #-Q- ada # @ output = $(job_name).$(jobid) |
---|
| 66 | #-Q- ada # Fichier de sortie d'erreur du travail |
---|
| 67 | #-Q- ada # @ error = $(job_name).$(jobid) |
---|
| 68 | #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
| 69 | #-Q- ada # @ notification = error |
---|
[1290] | 70 | #-Q- ada # @ environment = $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $POST_DIR ; $Script_Post_Output ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateEnd ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; wall_clock_limit=$(wall_clock_limit) |
---|
[770] | 71 | #-Q- ada # @ queue |
---|
[1568] | 72 | #-Q- obelix ###################### |
---|
| 73 | #-Q- obelix ## OBELIX LSCE ## |
---|
| 74 | #-Q- obelix ###################### |
---|
| 75 | #-Q- obelix #PBS -N TS |
---|
| 76 | #-Q- obelix #PBS -m a |
---|
| 77 | #-Q- obelix #PBS -j oe |
---|
| 78 | #-Q- obelix #PBS -q medium |
---|
| 79 | #-Q- obelix #PBS -o TS.$$ |
---|
| 80 | #-Q- obelix #PBS -S /bin/ksh |
---|
[1558] | 81 | #-Q- mesoipsl #!/bin/ksh |
---|
| 82 | #-Q- mesoipsl ###################### |
---|
| 83 | #-Q- mesoipsl ## MESO ESPRI IPSL ## |
---|
| 84 | #-Q- mesoipsl ###################### |
---|
| 85 | #-Q- mesoipsl #SBATCH --job-name=TS # Job Name |
---|
| 86 | #-Q- mesoipsl #SBATCH --output=TS.out_%I # standard output |
---|
| 87 | #-Q- mesoipsl #SBATCH --error=TS.out_%I # error output |
---|
| 88 | #-Q- mesoipsl #SBATCH -N 1 # Number of core |
---|
| 89 | #-Q- mesoipsl #SBATCH --time=10:00:00 # Wall clock limit (seconds) |
---|
[1184] | 90 | #-Q- ifort_CICLAD ###################### |
---|
| 91 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
---|
| 92 | #-Q- ifort_CICLAD ###################### |
---|
| 93 | #-Q- ifort_CICLAD #PBS -N TS |
---|
| 94 | #-Q- ifort_CICLAD #PBS -m a |
---|
| 95 | #-Q- ifort_CICLAD #PBS -j oe |
---|
[1314] | 96 | #-Q- ifort_CICLAD ###PBS -q h12 # Queue for 12 hours at ciclad only |
---|
[1184] | 97 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
---|
[2] | 98 | #-Q- default #!/bin/ksh |
---|
| 99 | #-Q- default ################## |
---|
| 100 | #-Q- default ## DEFAULT HOST ## |
---|
| 101 | #-Q- default ################## |
---|
| 102 | |
---|
[373] | 103 | #************************************************************** |
---|
| 104 | # Author: Sebastien Denvil |
---|
| 105 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
---|
| 106 | # $Revision:: $ Revision of last commit |
---|
| 107 | # $Author:: $ Author of last commit |
---|
| 108 | # $Date:: $ Date of last commit |
---|
[108] | 109 | # IPSL (2006) |
---|
| 110 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
---|
[373] | 111 | # |
---|
| 112 | #************************************************************** |
---|
[108] | 113 | |
---|
| 114 | #set -eu |
---|
[2] | 115 | #set -vx |
---|
| 116 | |
---|
| 117 | date |
---|
| 118 | |
---|
[770] | 119 | #-Q- ada export OMP_NUM_THREADS=1 |
---|
[2] | 120 | |
---|
[1356] | 121 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
---|
[712] | 122 | TaskType=post-processing |
---|
| 123 | |
---|
[2] | 124 | ######################################################################## |
---|
| 125 | |
---|
| 126 | #D- Flag to determine if this job in a standalone mode |
---|
| 127 | #D- Default : value from AA_job if any |
---|
| 128 | StandAlone=${StandAlone:=true} |
---|
| 129 | |
---|
[554] | 130 | #D- Path to libIGCM |
---|
[206] | 131 | #D- Default : value from AA_job if any |
---|
[229] | 132 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
---|
[206] | 133 | |
---|
| 134 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
---|
[213] | 135 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
---|
[209] | 136 | CompletedFlag=${CompletedFlag:=} |
---|
[135] | 137 | |
---|
[213] | 138 | #D- Flag to determine task type this script will perform. |
---|
| 139 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
---|
| 140 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
---|
[257] | 141 | TsTask=${TsTask:=2D} |
---|
[267] | 142 | if [ X${TsTask} = Xempty ] ; then |
---|
[785] | 143 | TsTask="" |
---|
[267] | 144 | fi |
---|
[213] | 145 | |
---|
| 146 | #D- Flag to determine if rebuild process has been performed asynchronously |
---|
[906] | 147 | #D- Possible value true or false. |
---|
[213] | 148 | #D- If true raw files has allready been patched by rebuild job |
---|
| 149 | #D- If false create_ts will patch the raw files |
---|
| 150 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
---|
| 151 | RebuildFrequency=${RebuildFrequency:=true} |
---|
| 152 | |
---|
[2] | 153 | #D- Flag to determine job's output directory |
---|
| 154 | #D- Default : value from libIGCM_post.ksh if any |
---|
[370] | 155 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
---|
[2] | 156 | |
---|
| 157 | #D- Increased verbosity (1, 2, 3) |
---|
| 158 | #D- Default : value from AA_job if any |
---|
| 159 | Verbosity=${Verbosity:=3} |
---|
| 160 | |
---|
| 161 | #D- Low level debug : to bypass lib test checks and stack construction |
---|
| 162 | #D- Default : value from AA_job if any |
---|
| 163 | DEBUG_debug=${DEBUG_debug:=false} |
---|
| 164 | |
---|
| 165 | #D- TEMPORARY Flag to determine atmospheric resolution |
---|
| 166 | #D- Default : value from atmospheric driver if any |
---|
[1549] | 167 | RESOL_ATM=${RESOL_ATM:=ALL} |
---|
[2] | 168 | |
---|
[257] | 169 | #D- Flag to determine surface resolution |
---|
| 170 | #D- Default : value from surface driver if any |
---|
[1549] | 171 | RESOL_SRF=${RESOL_SRF:=ALL} |
---|
[257] | 172 | |
---|
| 173 | #D- Flag to determine surface resolution |
---|
| 174 | #D- Default : value from surface driver if any |
---|
[1549] | 175 | RESOL_SBG=${RESOL_SBG:=ALL} |
---|
[257] | 176 | |
---|
[2] | 177 | #D- TEMPORARY Flag to determine ocean resolution |
---|
| 178 | #D- Default : value from ocean driver if any |
---|
| 179 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
---|
| 180 | |
---|
| 181 | #D- TEMPORARY Flag to determine ice resolution |
---|
| 182 | #D- Default : value from ice driver if any |
---|
[1326] | 183 | RESOL_ICE=${RESOL_OCE:=ORCA2} |
---|
[2] | 184 | |
---|
[178] | 185 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
---|
| 186 | #D- Default : value from ice driver if any |
---|
[1326] | 187 | RESOL_MBG=${RESOL_OCE:=ORCA2} |
---|
[178] | 188 | |
---|
[2] | 189 | ######################################################################## |
---|
| 190 | |
---|
[108] | 191 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 192 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 193 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
| 194 | #------- |
---|
| 195 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
[731] | 196 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
---|
[832] | 197 | #------- |
---|
[1192] | 198 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
---|
| 199 | IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
| 200 | #------- |
---|
[832] | 201 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
---|
| 202 | ( ${DEBUG_debug} ) && IGCM_card_Check |
---|
| 203 | ( ${DEBUG_debug} ) && IGCM_date_Check |
---|
[2] | 204 | |
---|
| 205 | ######################################################################## |
---|
| 206 | |
---|
| 207 | #set -vx |
---|
| 208 | |
---|
| 209 | # Useful cleaning function |
---|
[906] | 210 | MENAGE () |
---|
[81] | 211 | { |
---|
[1306] | 212 | typeset ExistFlag |
---|
| 213 | ExistFlag=$( IGCM_sys_RshArchive "[ -f $1/$3 ] && echo 0 || echo 1" ) |
---|
| 214 | [ ${ExistFlag} -eq 0 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
---|
[2] | 215 | } |
---|
| 216 | |
---|
| 217 | ######################################################################## |
---|
| 218 | |
---|
[436] | 219 | # ------------------------------------------------------------------ |
---|
| 220 | # Test if all was right before proceeding further |
---|
| 221 | # ------------------------------------------------------------------ |
---|
[1206] | 222 | IGCM_debug_Verif_Exit |
---|
[436] | 223 | |
---|
[2] | 224 | if [ ${StandAlone} = true ] ; then |
---|
[785] | 225 | CARD_DIR=${SUBMIT_DIR} |
---|
[2] | 226 | else |
---|
[785] | 227 | CARD_DIR=${RUN_DIR_PATH} |
---|
[903] | 228 | |
---|
[785] | 229 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
---|
[903] | 230 | |
---|
[785] | 231 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
---|
[903] | 232 | |
---|
[785] | 233 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
---|
[903] | 234 | |
---|
[785] | 235 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
---|
[2] | 236 | fi |
---|
| 237 | |
---|
[591] | 238 | #================================== |
---|
[2] | 239 | # First of all |
---|
| 240 | # |
---|
[727] | 241 | # Read libIGCM compatibility version in config.card |
---|
| 242 | # Read UserChoices section |
---|
| 243 | # Read Ensemble section |
---|
| 244 | # Read Post section |
---|
| 245 | # Define all netcdf output directories |
---|
[591] | 246 | #================================== |
---|
[727] | 247 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
---|
[591] | 248 | |
---|
[1198] | 249 | # ------------------------------------------------------------------ |
---|
| 250 | # Activate BigBrother so as to supervise this job |
---|
| 251 | # ------------------------------------------------------------------ |
---|
| 252 | IGCM_debug_BigBro_Initialize |
---|
| 253 | |
---|
[591] | 254 | #================================== |
---|
[633] | 255 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
---|
| 256 | if [ X${PackDefault} = Xtrue ] ; then |
---|
| 257 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
---|
| 258 | else |
---|
| 259 | config_Post_PackFrequency=NONE |
---|
| 260 | fi |
---|
[591] | 261 | |
---|
| 262 | #================================== |
---|
| 263 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
---|
| 264 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
---|
| 265 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
---|
| 266 | fi |
---|
| 267 | |
---|
[2] | 268 | # |
---|
[149] | 269 | # Determine component to take care of depending on kind of task create_ts will perform |
---|
[2] | 270 | # |
---|
[392] | 271 | [ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
---|
[2] | 272 | # |
---|
[149] | 273 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
---|
| 274 | # |
---|
[309] | 275 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
---|
[301] | 276 | |
---|
[2] | 277 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
---|
| 278 | # |
---|
| 279 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
---|
[149] | 280 | # |
---|
| 281 | # Determine Dimension of the produced time series : 2D or 3D |
---|
| 282 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
---|
[785] | 283 | Dimension=2D |
---|
[149] | 284 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
---|
[785] | 285 | Dimension=3D |
---|
[149] | 286 | else |
---|
[785] | 287 | Dimension="" |
---|
[149] | 288 | fi |
---|
[2] | 289 | |
---|
[441] | 290 | # ------------------------------------------------------------------ |
---|
| 291 | #D- Test if all was right before entering the loop |
---|
| 292 | # ------------------------------------------------------------------ |
---|
[1206] | 293 | IGCM_debug_Verif_Exit |
---|
[149] | 294 | |
---|
[2] | 295 | ######################################################################## |
---|
| 296 | # Depending on requested time series fill following variables : |
---|
| 297 | # |
---|
| 298 | # - LISTE_FILE_${comp}[*] |
---|
| 299 | # - LISTE_VARS_${file}[*] |
---|
| 300 | # - LISTE_AXIS_${file}[*] |
---|
| 301 | # - LISTE_PATCH_${file}[*] |
---|
| 302 | ######################################################################## |
---|
| 303 | |
---|
| 304 | # |
---|
| 305 | # For each selected component determine which files need post-processing |
---|
| 306 | # |
---|
| 307 | DoJob=false |
---|
| 308 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 309 | # |
---|
| 310 | ActiveComp=false |
---|
| 311 | # |
---|
| 312 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
---|
| 313 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
| 314 | # |
---|
| 315 | card=${CARD_DIR}/COMP/${compname}.card |
---|
| 316 | |
---|
| 317 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
| 318 | # |
---|
| 319 | ListFilesName=${compname}_OutputFiles_List |
---|
| 320 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
| 321 | # |
---|
| 322 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
[2] | 323 | # |
---|
[785] | 324 | #IGCM_debug_Print 1 "Component : ${compname}" |
---|
[2] | 325 | # |
---|
[785] | 326 | # INITIALISATION |
---|
[2] | 327 | # |
---|
[785] | 328 | typeset i |
---|
| 329 | if [ ${FlagToRead} ] ; then |
---|
| 330 | ((NbFiles=${FlagToRead})) |
---|
| 331 | ((i=${NbFiles})) |
---|
| 332 | else |
---|
| 333 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
| 334 | i=2 |
---|
| 335 | fi |
---|
[2] | 336 | # |
---|
[785] | 337 | until [ $i -gt $NbFiles ]; do |
---|
| 338 | # |
---|
| 339 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
| 340 | # |
---|
| 341 | if [ X${flag_post} != XNONE ] ; then |
---|
| 342 | # |
---|
| 343 | # For each comp and each file who needs post-processing |
---|
| 344 | # determine which variables need time series. |
---|
| 345 | # |
---|
| 346 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
---|
| 347 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
---|
| 348 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
---|
| 349 | # |
---|
| 350 | # If TimeSeriesVars list is empty we skip |
---|
| 351 | # |
---|
| 352 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
---|
| 353 | # |
---|
| 354 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
| 355 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
---|
| 356 | (( i=i+3 )) |
---|
| 357 | continue |
---|
| 358 | # |
---|
| 359 | fi |
---|
| 360 | # |
---|
| 361 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
---|
| 362 | # |
---|
| 363 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
---|
| 364 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
| 365 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
---|
| 366 | (( i=i+3 )) |
---|
| 367 | continue |
---|
| 368 | fi |
---|
| 369 | # |
---|
| 370 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
---|
| 371 | # |
---|
| 372 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
---|
| 373 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
---|
| 374 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
---|
| 375 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
---|
| 376 | (( i=i+3 )) |
---|
| 377 | continue |
---|
| 378 | fi |
---|
| 379 | fi |
---|
| 380 | # |
---|
| 381 | # Now on we know we have things to do |
---|
| 382 | # |
---|
[236] | 383 | |
---|
[785] | 384 | # |
---|
| 385 | # We need coordinates axis to properly fill produced time series |
---|
| 386 | # |
---|
| 387 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
---|
| 388 | # |
---|
| 389 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
---|
| 390 | # |
---|
| 391 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
---|
| 392 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
---|
| 393 | (( i=i+3 )) |
---|
| 394 | continue |
---|
| 395 | # |
---|
| 396 | fi |
---|
| 397 | # |
---|
| 398 | # We need LIST of variables not allready produced (useful for standalone mode) |
---|
| 399 | # |
---|
| 400 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
---|
| 401 | case ${FlagDir} in |
---|
| 402 | *Y) TS_Dir=TS_YE ;; |
---|
| 403 | *M) TS_Dir=TS_MO ;; |
---|
| 404 | *D) TS_Dir=TS_DA ;; |
---|
| 405 | HF) TS_Dir=TS_HF ;; |
---|
| 406 | 3H) TS_Dir=TS_HF ;; |
---|
| 407 | INS) TS_Dir=TS_INS ;; |
---|
| 408 | esac |
---|
| 409 | # |
---|
| 410 | count=0 |
---|
| 411 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
---|
| 412 | # |
---|
| 413 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 414 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
---|
| 415 | # |
---|
| 416 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
---|
| 417 | if [ ! $? = 0 ] ; then |
---|
| 418 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
---|
| 419 | ActiveComp=true |
---|
| 420 | (( count = count + 1 )) |
---|
| 421 | fi |
---|
| 422 | done |
---|
| 423 | # |
---|
| 424 | if [ ${count} -gt 0 ] ; then |
---|
| 425 | # |
---|
| 426 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
---|
| 427 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
---|
| 428 | # |
---|
| 429 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
| 430 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
---|
| 431 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
---|
| 432 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
---|
| 433 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
---|
| 434 | if [ Xload${Patch} != X ] ; then |
---|
| 435 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
---|
| 436 | eval load${Patch}=loaded |
---|
| 437 | fi |
---|
| 438 | done |
---|
| 439 | fi |
---|
| 440 | fi |
---|
| 441 | fi |
---|
| 442 | fi |
---|
| 443 | (( i=i+3 )) |
---|
| 444 | done |
---|
| 445 | fi |
---|
| 446 | # |
---|
| 447 | if [ ${ActiveComp} = true ] ; then |
---|
| 448 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
---|
| 449 | fi |
---|
[2] | 450 | done |
---|
| 451 | |
---|
| 452 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
---|
| 453 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
---|
| 454 | |
---|
| 455 | ######################################################################## |
---|
| 456 | # |
---|
| 457 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
---|
| 458 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
---|
| 459 | # |
---|
| 460 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
---|
| 461 | # - especially for IDRiS |
---|
| 462 | # - no special protection against "command too long" ! |
---|
| 463 | # - libIGCM_sys should handle that or modify following code part |
---|
| 464 | # |
---|
| 465 | ######################################################################## |
---|
| 466 | |
---|
| 467 | if [ ${StandAlone} != true ] ; then |
---|
[785] | 468 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
---|
| 469 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
---|
| 470 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
---|
[2] | 471 | |
---|
[785] | 472 | #if [ X${Running_Flag} = Xy ] ; then |
---|
| 473 | # # Time Series Job allready running |
---|
| 474 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
---|
| 475 | # exit |
---|
| 476 | #fi |
---|
| 477 | # Now run.card know we are running |
---|
[149] | 478 | |
---|
| 479 | |
---|
| 480 | |
---|
| 481 | |
---|
[785] | 482 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
[149] | 483 | |
---|
| 484 | |
---|
| 485 | |
---|
| 486 | |
---|
| 487 | |
---|
[785] | 488 | # Get information from last execution |
---|
| 489 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
| 490 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
| 491 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
[2] | 492 | fi |
---|
| 493 | |
---|
| 494 | # Is it the first submission or not ? |
---|
[149] | 495 | |
---|
| 496 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
---|
[785] | 497 | # First Time Series Submission |
---|
| 498 | FIRST_PASS=TRUE |
---|
| 499 | Length=$( IGCM_date_DaysInPreviousPeriod ${DateBegin} ${config_UserChoices_PeriodLength} begin) |
---|
| 500 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
---|
[2] | 501 | else |
---|
[785] | 502 | # Last Completed Time Series |
---|
| 503 | FIRST_PASS=FALSE |
---|
| 504 | DATE_FIN_JOB_B=${CompletedFlag} |
---|
| 505 | date=${DateBegin}_${DATE_FIN_JOB_B} |
---|
[1038] | 506 | # |
---|
[785] | 507 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 508 | # |
---|
| 509 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 510 | # |
---|
| 511 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 512 | # |
---|
| 513 | unset liste_file |
---|
| 514 | # |
---|
| 515 | file_path=${R_SAVE}/${comp}/Analyse |
---|
| 516 | # |
---|
| 517 | i=0 |
---|
| 518 | file=${NULL_STR} |
---|
| 519 | # |
---|
| 520 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 521 | # |
---|
| 522 | # Determine in which output can we find file |
---|
| 523 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
| 524 | # |
---|
| 525 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 526 | case ${FlagDir} in |
---|
| 527 | *Y) TS_Dir=TS_YE ;; |
---|
| 528 | *M) TS_Dir=TS_MO ;; |
---|
| 529 | *D) TS_Dir=TS_DA ;; |
---|
| 530 | HF) TS_Dir=TS_HF ;; |
---|
| 531 | 3H) TS_Dir=TS_HF ;; |
---|
| 532 | INS) TS_Dir=TS_INS ;; |
---|
| 533 | esac |
---|
| 534 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
[2] | 535 | # |
---|
[1033] | 536 | IGCM_sys_TestFileArchive ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 537 | if [ $? = 0 ] ; then |
---|
| 538 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 539 | else |
---|
| 540 | IGCM_debug_Print 1 "WARNING ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc dont exist" |
---|
| 541 | fi |
---|
[785] | 542 | # |
---|
| 543 | done |
---|
[2] | 544 | done |
---|
[785] | 545 | if [ X${file} != X${NULL_STR} ] ; then |
---|
| 546 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
[1206] | 547 | IGCM_debug_Verif_Exit |
---|
[785] | 548 | fi |
---|
| 549 | done |
---|
| 550 | # |
---|
| 551 | LEVEL=0 |
---|
| 552 | # |
---|
[2] | 553 | fi |
---|
| 554 | |
---|
| 555 | ######################################################################## |
---|
| 556 | # |
---|
| 557 | # DEFINE LOOP PARAMETERS |
---|
| 558 | # |
---|
| 559 | ######################################################################## |
---|
| 560 | |
---|
| 561 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
| 562 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
| 563 | |
---|
| 564 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
| 565 | |
---|
| 566 | if [ ${DoJob} = true ] ; then |
---|
[785] | 567 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
| 568 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
| 569 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_COUNT} ${config_UserChoices_PeriodLength} ) |
---|
| 570 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
| 571 | done |
---|
[2] | 572 | else |
---|
[785] | 573 | NBRE_FILE_TOT=0 |
---|
[2] | 574 | fi |
---|
| 575 | |
---|
| 576 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
[906] | 577 | NBRE_TOUR=1 |
---|
[2] | 578 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
[906] | 579 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
[2] | 580 | else |
---|
[785] | 581 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
[2] | 582 | fi |
---|
| 583 | |
---|
| 584 | CURRENT_LOOP=1 |
---|
| 585 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
[906] | 586 | # WE HAVE 3 LEVELS |
---|
[2] | 587 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 588 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 589 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 590 | |
---|
| 591 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
| 592 | |
---|
[906] | 593 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
[785] | 594 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 595 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
[2] | 596 | |
---|
[785] | 597 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
| 598 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
| 599 | else |
---|
| 600 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 601 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 602 | fi |
---|
[2] | 603 | |
---|
[785] | 604 | DATE_FIN=${PeriodDateEnd} |
---|
| 605 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
[2] | 606 | |
---|
[785] | 607 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 608 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
[2] | 609 | |
---|
[785] | 610 | LEVEL=1 |
---|
[906] | 611 | DEPOT="TRUE" |
---|
[785] | 612 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
| 613 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 614 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
[2] | 615 | |
---|
[785] | 616 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
| 617 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 618 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 619 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
| 620 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
[2] | 621 | else |
---|
[785] | 622 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
| 623 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 624 | fi |
---|
[2] | 625 | |
---|
[785] | 626 | (( TotLength = 0 )) |
---|
| 627 | COMPTEUR=1 |
---|
| 628 | DATE_LOOP=${DATE_COURANTE} |
---|
[2] | 629 | |
---|
[785] | 630 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
| 631 | # |
---|
| 632 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 633 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
| 634 | (( TotLength = TotLength + Length )) |
---|
| 635 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 636 | # |
---|
| 637 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 638 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
[2] | 639 | |
---|
[785] | 640 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 641 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 642 | DEPOT="FALSE" |
---|
| 643 | LEVEL=2 |
---|
| 644 | else |
---|
| 645 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 646 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
| 647 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
[2] | 648 | |
---|
[785] | 649 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
| 650 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 651 | DATE_FIN=${PeriodDateEnd} |
---|
| 652 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
[2] | 653 | |
---|
[785] | 654 | LEVEL=3 |
---|
| 655 | DEPOT="TRUE" |
---|
| 656 | FLAG_B="TRUE" |
---|
| 657 | fi |
---|
[2] | 658 | |
---|
[785] | 659 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
| 660 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 661 | # |
---|
| 662 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 663 | # |
---|
| 664 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 665 | # |
---|
| 666 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 667 | # |
---|
| 668 | i=0 |
---|
| 669 | # |
---|
| 670 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 671 | # |
---|
| 672 | # Determine in which output we can find file |
---|
| 673 | # IE : Output/MO or Output/DA or ... |
---|
| 674 | # |
---|
| 675 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 676 | case ${FlagDir} in |
---|
| 677 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
| 678 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
| 679 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
| 680 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 681 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
| 682 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
| 683 | *) IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
[1205] | 684 | IGCM_debug_Exit "Job create_ts" ;; |
---|
[785] | 685 | esac |
---|
[2] | 686 | |
---|
[785] | 687 | # Initialize array |
---|
| 688 | unset liste_file |
---|
| 689 | unset liste_file_tmp |
---|
| 690 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
[2] | 691 | |
---|
[785] | 692 | COMPTEUR=1 |
---|
[817] | 693 | MissingFile=FALSE |
---|
[785] | 694 | DATE_LOOP=${DATE_COURANTE} |
---|
[2] | 695 | |
---|
[785] | 696 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
| 697 | # |
---|
| 698 | Length1=$( IGCM_date_DaysInPreviousPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} end) |
---|
| 699 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
[2] | 700 | |
---|
[785] | 701 | Length2=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
| 702 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
[2] | 703 | |
---|
[817] | 704 | IGCM_sys_TestFileArchive ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 705 | if [ $? = 0 ] ; then |
---|
| 706 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 707 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 708 | else |
---|
| 709 | IGCM_debug_Print 1 "WARNING ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc dont exist" |
---|
| 710 | MissingFile=TRUE |
---|
| 711 | fi |
---|
[785] | 712 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 713 | # |
---|
| 714 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
[817] | 715 | |
---|
| 716 | # We skip this file type if one of them is missing. |
---|
| 717 | if [ "${MissingFile}" = "TRUE" ] ; then |
---|
| 718 | IGCM_debug_Print 1 "WARNING We skip ${file} type processing" |
---|
| 719 | continue |
---|
| 720 | fi |
---|
| 721 | |
---|
[785] | 722 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
[2] | 723 | |
---|
[785] | 724 | # Get selected files |
---|
| 725 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
[1206] | 726 | IGCM_debug_Verif_Exit |
---|
[2] | 727 | |
---|
[785] | 728 | # Apply IGCM_Patch if needed |
---|
| 729 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
| 730 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
[906] | 731 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
[785] | 732 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 733 | IGCM_${Patch} ${file_t} |
---|
[1206] | 734 | IGCM_debug_Verif_Exit |
---|
[785] | 735 | done |
---|
| 736 | done |
---|
| 737 | fi |
---|
| 738 | fi |
---|
[2] | 739 | |
---|
[785] | 740 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
| 741 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
| 742 | Length=$( IGCM_date_DaysInPreviousPeriod ${DATE_COURANTE} ${config_UserChoices_PeriodLength} end) |
---|
| 743 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
| 744 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
| 745 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
[514] | 746 | |
---|
[785] | 747 | liste_coord=" " |
---|
| 748 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
| 749 | liste_coord=${liste_coord}${axis}"," |
---|
| 750 | done |
---|
[287] | 751 | |
---|
[785] | 752 | # Time axis must be the last dimension |
---|
| 753 | time_axis=${axis} |
---|
[388] | 754 | |
---|
[785] | 755 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
| 756 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 757 | # |
---|
[1033] | 758 | # We skip variables not in the first file of the list. |
---|
| 759 | # Seems overkill to test thel all... but will do if needed |
---|
| 760 | ncdump -hv ${var} ${liste_file_tmp[0]} > /dev/null 2>&1 |
---|
| 761 | if [ ! $? = 0 ] ; then |
---|
| 762 | IGCM_debug_Print 1 "WARNING We skip ${var}, not present within ${liste_file_tmp[0]}" |
---|
| 763 | continue |
---|
| 764 | fi |
---|
| 765 | # |
---|
[785] | 766 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
| 767 | # WE CONCATENATE WITH EXISTING FILES |
---|
| 768 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
| 769 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
| 770 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
---|
[1206] | 771 | IGCM_debug_Verif_Exit |
---|
[785] | 772 | # |
---|
| 773 | IGCM_sys_Rm ${file1} |
---|
| 774 | if [ ! "${DEPOT}" = "TRUE" ] ; then |
---|
| 775 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 776 | # "${file1} = file_before ? |
---|
| 777 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
| 778 | fi |
---|
| 779 | else |
---|
| 780 | # OR NOT |
---|
[1047] | 781 | file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 782 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${file_out} |
---|
[1206] | 783 | IGCM_debug_Verif_Exit |
---|
[785] | 784 | fi |
---|
| 785 | |
---|
| 786 | # |
---|
| 787 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
[1042] | 788 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
| 789 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 790 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
[785] | 791 | # |
---|
[1042] | 792 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 793 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
| 794 | if [ ! "X${file1}" = "X" ] ; then |
---|
| 795 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
| 796 | fi |
---|
| 797 | # |
---|
[1039] | 798 | [ -f ${file_out} ] && IGCM_sys_Rm ${file_out} |
---|
[785] | 799 | # |
---|
| 800 | fi |
---|
| 801 | # |
---|
[1038] | 802 | done # for var in ${liste_var} ; do |
---|
[785] | 803 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
[1038] | 804 | done # for file in ${liste_file_brut} do |
---|
| 805 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
[785] | 806 | # GO AHEAD IN DEEPEST LOOP |
---|
| 807 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
[1038] | 808 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
[2] | 809 | # FINISH |
---|
| 810 | |
---|
| 811 | # DODS copy |
---|
| 812 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[1393] | 813 | for TS_Dir in TS_YE TS_MO TS_DA TS_HF TS_INS ; do |
---|
[785] | 814 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 815 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
| 816 | done |
---|
[2] | 817 | done |
---|
| 818 | |
---|
[1112] | 819 | export DEBUG_debug; export BigBrother ; export libIGCM; export SUBMIT_DIR; export POST_DIR; export Script_Output ; |
---|
| 820 | export StandAlone ; export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; |
---|
| 821 | export RESOL_SBG |
---|
| 822 | listVarEnv="DEBUG_debug,BigBrother,libIGCM,SUBMIT_DIR,POST_DIR,Script_Post_Output,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
---|
[2] | 823 | export listVarEnv |
---|
| 824 | |
---|
| 825 | #D- |
---|
| 826 | # -------------------------------------------------------------------- |
---|
| 827 | #D- Test if all was right |
---|
| 828 | # -------------------------------------------------------------------- |
---|
[1206] | 829 | IGCM_debug_Verif_Exit |
---|
[2] | 830 | # -------------------------------------------------------------------- |
---|
| 831 | #D- Submit MONITORING |
---|
| 832 | # -------------------------------------------------------------------- |
---|
[414] | 833 | if ( [ X${TsTask} = X2D ] || [ X${TsTask} = X3D ] || [ X${TsTask} = X ] ) ; then |
---|
[1439] | 834 | # From 2D and 3D it is the last one to finish that will submit the monitoring. |
---|
[1577] | 835 | if ( [ $( ls ${POST_DIR}/create_ts.${PeriodDateEnd}.[23]D.out | wc -l ) = 1 ] || [ ! "X$( grep "IGCM_sys_RmRunDir" ${POST_DIR}/create_ts.${PeriodDateEnd}.[23]D.out 2> /dev/null )" = "X" ] ) ; then |
---|
[1439] | 836 | Script_Post_Output=monitoring.${PeriodDateEnd} |
---|
| 837 | IGCM_sys_QsubPost monitoring |
---|
| 838 | fi |
---|
[387] | 839 | fi |
---|
[2] | 840 | #D- |
---|
| 841 | # -------------------------------------------------------------------- |
---|
| 842 | #D- Update the run.card |
---|
| 843 | # -------------------------------------------------------------------- |
---|
| 844 | if [ ${StandAlone} != true ] ; then |
---|
[785] | 845 | # Put in run.card end period of time series |
---|
| 846 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
| 847 | # We have finish the job ! |
---|
| 848 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
[2] | 849 | fi |
---|
[203] | 850 | |
---|
[590] | 851 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[203] | 852 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
| 853 | |
---|
[1198] | 854 | # ------------------------------------------------------------------ |
---|
| 855 | # Finalize BigBrother to inform that the jobs end |
---|
| 856 | # ------------------------------------------------------------------ |
---|
| 857 | IGCM_debug_BigBro_Finalize |
---|
| 858 | |
---|
[2] | 859 | date |
---|