[314] | 1 | #-Q- cesium #!/bin/ksh |
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| 2 | #-Q- cesium ###################### |
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| 3 | #-Q- cesium ## CESIUM CEA ## |
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| 4 | #-Q- cesium ###################### |
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| 5 | #-Q- cesium #MSUB -r TS # Nom du job |
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| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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| 9 | #-Q- cesium #MSUB -E "-j o" |
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| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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[2] | 11 | #-Q- platine #!/usr/bin/ksh |
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[196] | 12 | #-Q- platine ################### |
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[2] | 13 | #-Q- platine ## PLATINE CEA ## |
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[196] | 14 | #-Q- platine ################### |
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[2] | 15 | #-Q- platine #BSUB -J TS # Nom du job |
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| 16 | #-Q- platine #BSUB -N # message a la fin du job |
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| 17 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 18 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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[149] | 19 | #-Q- platine #BSUB -q post # Passage en queue post |
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[426] | 20 | #-Q- platine #BSUB -L /bin/ksh |
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[59] | 21 | #-Q- sx8brodie #!/bin/ksh |
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[2] | 22 | #-Q- sx8brodie ####################### |
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| 23 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 24 | #-Q- sx8brodie ####################### |
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[58] | 25 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 26 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
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[58] | 27 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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[62] | 28 | #-Q- sx8brodie # @ job_name = TS |
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[58] | 29 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 30 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 31 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 32 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 33 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 34 | #-Q- sx8brodie # @ notification = error |
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[424] | 35 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[386] | 36 | #-Q- sx8brodie # @ queue |
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[68] | 37 | #-Q- aix6 #!/bin/ksh |
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| 38 | #-Q- aix6 ####################### |
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| 39 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 40 | #-Q- aix6 ####################### |
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| 41 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 42 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
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[68] | 43 | #-Q- aix6 # Nom du travail LoadLeveler |
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[78] | 44 | #-Q- aix6 # @ job_name = TS |
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[68] | 45 | #-Q- aix6 # Fichier de sortie standard du travail |
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| 46 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 47 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 48 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 49 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 50 | #-Q- aix6 # @ notification = error |
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[409] | 51 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[68] | 52 | #-Q- aix6 # @ queue |
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[386] | 53 | #-Q- ulam #!/bin/ksh |
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| 54 | #-Q- ulam ####################### |
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| 55 | #-Q- ulam ## ULAM IDRIS ## |
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| 56 | #-Q- ulam ####################### |
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| 57 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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| 58 | #-Q- ulam # @ wall_clock_limit = 20:00:00 |
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| 59 | #-Q- ulam # Nom du travail LoadLeveler |
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| 60 | #-Q- ulam # @ job_name = TS |
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| 61 | #-Q- ulam # Fichier de sortie standard du travail |
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| 62 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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| 63 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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| 64 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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| 65 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 66 | #-Q- ulam # @ notification = error |
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[409] | 67 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[386] | 68 | #-Q- ulam # @ queue |
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[2] | 69 | #-Q- sx8mercure #!/bin/ksh |
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| 70 | #-Q- sx8mercure ###################### |
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| 71 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 72 | #-Q- sx8mercure ###################### |
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| 73 | #-Q- sx8mercure #PBS -N TS # Nom du job |
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| 74 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 75 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 76 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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[189] | 77 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures |
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[299] | 78 | #-Q- sx8mercure #PBS -q scalaire |
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[172] | 79 | #-Q- sx9mercure #!/bin/ksh |
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[316] | 80 | #-Q- sx9mercure ######################### |
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| 81 | #-Q- sx9mercure ## CESIUM FOR SX9 CEA ## |
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| 82 | #-Q- sx9mercure ######################### |
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| 83 | #-Q- sx9mercure #MSUB -r TS # Nom du job |
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| 84 | #-Q- sx9mercure #MSUB -N 1 # Reservation du noeud |
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| 85 | #-Q- sx9mercure #MSUB -n 1 # Reservation du processus |
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| 86 | #-Q- sx9mercure #MSUB -T 86400 # Limite de temps elapsed du job |
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| 87 | #-Q- sx9mercure #MSUB -E "-j o" |
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| 88 | #-Q- sx9mercure #MSUB -E "-S /bin/ksh" |
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[222] | 89 | #-Q- titane #!/bin/ksh |
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| 90 | #-Q- titane ###################### |
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| 91 | #-Q- titane ## TITANE CEA ## |
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| 92 | #-Q- titane ###################### |
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| 93 | #-Q- titane #MSUB -r TS # Nom du job |
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| 94 | #-Q- titane #MSUB -N 1 # Reservation du noeud |
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| 95 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 96 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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| 97 | #-Q- titane #MSUB -E "-j o" |
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| 98 | #-Q- titane #MSUB -E "-S /bin/ksh" |
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| 99 | #-Q- titane ##MSUB -e nco.out # Sortie standard |
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| 100 | #-Q- titane ##MSUB -o nco.out # Sortie standard |
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[287] | 101 | #-Q- lxiv8 ###################### |
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| 102 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 103 | #-Q- lxiv8 ###################### |
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| 104 | #-Q- lxiv8 #PBS -N TS |
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| 105 | #-Q- lxiv8 #PBS -m a |
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| 106 | #-Q- lxiv8 #PBS -j oe |
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| 107 | #-Q- lxiv8 #PBS -q medium |
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| 108 | #-Q- lxiv8 #PBS -o TS.$$ |
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| 109 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[2] | 110 | #-Q- default #!/bin/ksh |
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| 111 | #-Q- default ################## |
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| 112 | #-Q- default ## DEFAULT HOST ## |
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| 113 | #-Q- default ################## |
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| 114 | |
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[373] | 115 | #************************************************************** |
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| 116 | # Author: Sebastien Denvil |
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| 117 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 118 | # $Revision:: $ Revision of last commit |
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| 119 | # $Author:: $ Author of last commit |
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| 120 | # $Date:: $ Date of last commit |
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[108] | 121 | # IPSL (2006) |
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| 122 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 123 | # |
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| 124 | #************************************************************** |
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[108] | 125 | |
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| 126 | #set -eu |
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[2] | 127 | #set -vx |
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| 128 | |
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| 129 | date |
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| 130 | |
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| 131 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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[108] | 132 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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[386] | 133 | #-Q- ulam export OMP_NUM_THREADS=1 |
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[2] | 134 | |
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| 135 | ######################################################################## |
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| 136 | |
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| 137 | #D- Flag to determine if this job in a standalone mode |
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| 138 | #D- Default : value from AA_job if any |
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| 139 | StandAlone=${StandAlone:=true} |
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| 140 | |
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[206] | 141 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 142 | #D- Default : value from AA_job if any |
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[229] | 143 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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| 144 | # WARNING for StandAlone used : To run this script on some machine, |
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| 145 | # you must check MirrorlibIGCM variable in sys library. |
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| 146 | # If this variable is true, you must use libIGCM_POST path instead |
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| 147 | # of your running libIGCM directory. |
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[206] | 148 | |
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| 149 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
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[213] | 150 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
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[209] | 151 | CompletedFlag=${CompletedFlag:=} |
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[135] | 152 | |
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[213] | 153 | #D- Flag to determine task type this script will perform. |
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| 154 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
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| 155 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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[257] | 156 | TsTask=${TsTask:=2D} |
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[267] | 157 | if [ X${TsTask} = Xempty ] ; then |
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| 158 | TsTask="" |
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| 159 | fi |
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[213] | 160 | |
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| 161 | #D- Flag to determine if rebuild process has been performed asynchronously |
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| 162 | #D- Possible value true or false. |
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| 163 | #D- If true raw files has allready been patched by rebuild job |
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| 164 | #D- If false create_ts will patch the raw files |
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| 165 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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| 166 | RebuildFrequency=${RebuildFrequency:=true} |
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| 167 | |
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[2] | 168 | #D- Flag to determine job's output directory |
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| 169 | #D- Default : value from libIGCM_post.ksh if any |
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[370] | 170 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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[2] | 171 | |
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| 172 | #D- Increased verbosity (1, 2, 3) |
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| 173 | #D- Default : value from AA_job if any |
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| 174 | Verbosity=${Verbosity:=3} |
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| 175 | |
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| 176 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 177 | #D- Default : value from AA_job if any |
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| 178 | DEBUG_debug=${DEBUG_debug:=false} |
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| 179 | |
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| 180 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 181 | #D- Default : value from atmospheric driver if any |
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[254] | 182 | RESOL_ATM=ALL |
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[2] | 183 | |
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[257] | 184 | #D- Flag to determine surface resolution |
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| 185 | #D- Default : value from surface driver if any |
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| 186 | RESOL_SRF=ALL |
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| 187 | |
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| 188 | #D- Flag to determine surface resolution |
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| 189 | #D- Default : value from surface driver if any |
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| 190 | RESOL_SBG=ALL |
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| 191 | |
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[2] | 192 | #D- TEMPORARY Flag to determine ocean resolution |
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| 193 | #D- Default : value from ocean driver if any |
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| 194 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 195 | |
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| 196 | #D- TEMPORARY Flag to determine ice resolution |
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| 197 | #D- Default : value from ice driver if any |
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| 198 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 199 | |
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[178] | 200 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 201 | #D- Default : value from ice driver if any |
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| 202 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 203 | |
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[2] | 204 | ######################################################################## |
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| 205 | |
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[108] | 206 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 207 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 208 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 209 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 210 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 211 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 212 | #------- |
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| 213 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[2] | 214 | |
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| 215 | ######################################################################## |
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| 216 | |
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| 217 | #set -vx |
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| 218 | |
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| 219 | # Useful cleaning function |
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| 220 | MENAGE () |
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[81] | 221 | { |
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| 222 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
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[2] | 223 | } |
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| 224 | |
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| 225 | ######################################################################## |
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| 226 | |
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[202] | 227 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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[2] | 228 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 229 | |
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[436] | 230 | # ------------------------------------------------------------------ |
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| 231 | # Test if all was right before proceeding further |
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| 232 | # ------------------------------------------------------------------ |
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| 233 | IGCM_debug_Verif_Exit_Post |
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| 234 | |
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[2] | 235 | if [ ${StandAlone} = true ] ; then |
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| 236 | CARD_DIR=${SUBMIT_DIR} |
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| 237 | else |
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| 238 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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| 239 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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| 240 | fi |
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| 241 | |
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| 242 | # |
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| 243 | # First of all |
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| 244 | # |
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| 245 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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| 246 | typeset option |
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| 247 | for option in ${config_UserChoices[*]} ; do |
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| 248 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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| 249 | done |
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| 250 | # |
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| 251 | echo |
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| 252 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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| 253 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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| 254 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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| 255 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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[263] | 256 | IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName |
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| 257 | IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName |
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[2] | 258 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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| 259 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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| 260 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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| 261 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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| 262 | echo |
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| 263 | |
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| 264 | #================================== |
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[263] | 265 | #R_SAVE : Job output directory |
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| 266 | if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then |
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| 267 | FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' ) |
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| 268 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 269 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName} |
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| 270 | else |
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| 271 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 272 | R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 273 | fi |
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[2] | 274 | # |
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[149] | 275 | # Determine component to take care of depending on kind of task create_ts will perform |
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[2] | 276 | # |
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[392] | 277 | [ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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[2] | 278 | # |
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[149] | 279 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
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| 280 | # |
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[309] | 281 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
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[301] | 282 | |
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[2] | 283 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 284 | # |
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| 285 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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[149] | 286 | # |
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| 287 | # Determine Dimension of the produced time series : 2D or 3D |
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| 288 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
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| 289 | Dimension=2D |
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| 290 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
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| 291 | Dimension=3D |
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| 292 | else |
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| 293 | Dimension="" |
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| 294 | fi |
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[2] | 295 | |
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[441] | 296 | # ------------------------------------------------------------------ |
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| 297 | #D- Test if all was right before entering the loop |
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| 298 | # ------------------------------------------------------------------ |
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| 299 | IGCM_debug_Verif_Exit_Post |
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[149] | 300 | |
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[2] | 301 | ######################################################################## |
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| 302 | # |
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| 303 | # Depending on requested time series fill following variables : |
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| 304 | # |
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| 305 | # - LISTE_FILE_${comp}[*] |
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| 306 | # - LISTE_VARS_${file}[*] |
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| 307 | # - LISTE_AXIS_${file}[*] |
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| 308 | # - LISTE_PATCH_${file}[*] |
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| 309 | ######################################################################## |
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| 310 | |
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| 311 | # |
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| 312 | # For each selected component determine which files need post-processing |
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| 313 | # |
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| 314 | DoJob=false |
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| 315 | for comp in ${config_ListOfComponents[*]} ; do |
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| 316 | # |
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| 317 | ActiveComp=false |
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| 318 | # |
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| 319 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 320 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 321 | # |
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| 322 | card=${CARD_DIR}/COMP/${compname}.card |
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[149] | 323 | |
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[2] | 324 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 325 | # |
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| 326 | ListFilesName=${compname}_OutputFiles_List |
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| 327 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 328 | # |
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| 329 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 330 | # |
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| 331 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 332 | # |
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| 333 | # INITIALISATION |
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| 334 | # |
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[149] | 335 | typeset i |
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[392] | 336 | if [ ${FlagToRead} ] ; then |
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[149] | 337 | ((NbFiles=${FlagToRead})) |
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[243] | 338 | ((i=${NbFiles})) |
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[149] | 339 | else |
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| 340 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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[243] | 341 | i=2 |
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[149] | 342 | fi |
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[2] | 343 | # |
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[243] | 344 | until [ $i -gt $NbFiles ]; do |
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[2] | 345 | # |
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[243] | 346 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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[2] | 347 | # |
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| 348 | if [ X${flag_post} != XNONE ] ; then |
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| 349 | # |
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[149] | 350 | # For each comp and each file who needs post-processing |
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| 351 | # determine which variables need time series. |
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| 352 | # |
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| 353 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
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[236] | 354 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
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| 355 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
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[149] | 356 | # |
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[236] | 357 | # If TimeSeriesVars list is empty we skip |
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| 358 | # |
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[149] | 359 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
---|
| 360 | # |
---|
| 361 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
[236] | 362 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
---|
[149] | 363 | (( i=i+3 )) |
---|
| 364 | continue |
---|
| 365 | # |
---|
| 366 | fi |
---|
[2] | 367 | # |
---|
[236] | 368 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
---|
| 369 | # |
---|
[237] | 370 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
---|
[236] | 371 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
[237] | 372 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
---|
[236] | 373 | (( i=i+3 )) |
---|
| 374 | continue |
---|
| 375 | fi |
---|
| 376 | # |
---|
| 377 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
---|
[149] | 378 | # |
---|
[189] | 379 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
---|
[149] | 380 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
---|
| 381 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
---|
| 382 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
---|
| 383 | (( i=i+3 )) |
---|
| 384 | continue |
---|
| 385 | fi |
---|
| 386 | fi |
---|
| 387 | # |
---|
[236] | 388 | # Now on we know we have things to do |
---|
| 389 | # |
---|
| 390 | |
---|
| 391 | # |
---|
[149] | 392 | # We need coordinates axis to properly fill produced time series |
---|
| 393 | # |
---|
| 394 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
---|
| 395 | # |
---|
| 396 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
---|
| 397 | # |
---|
| 398 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
---|
| 399 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
---|
| 400 | (( i=i+3 )) |
---|
| 401 | continue |
---|
| 402 | # |
---|
| 403 | fi |
---|
| 404 | # |
---|
| 405 | # We need LIST of variables not allready produced (useful for standalone mode) |
---|
| 406 | # |
---|
| 407 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
---|
| 408 | case ${FlagDir} in |
---|
| 409 | *Y) TS_Dir=TS_YE ;; |
---|
| 410 | *M) TS_Dir=TS_MO ;; |
---|
| 411 | *D) TS_Dir=TS_DA ;; |
---|
| 412 | HF) TS_Dir=TS_HF ;; |
---|
[265] | 413 | 3H) TS_Dir=TS_HF ;; |
---|
[149] | 414 | INS) TS_Dir=TS_INS ;; |
---|
| 415 | esac |
---|
| 416 | # |
---|
| 417 | count=0 |
---|
| 418 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
---|
| 419 | # |
---|
| 420 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 421 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
---|
| 422 | # |
---|
| 423 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
---|
| 424 | if [ ! $? = 0 ] ; then |
---|
| 425 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
---|
| 426 | ActiveComp=true |
---|
| 427 | (( count = count + 1 )) |
---|
| 428 | fi |
---|
| 429 | done |
---|
| 430 | # |
---|
| 431 | if [ ${count} -gt 0 ] ; then |
---|
| 432 | # |
---|
| 433 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
---|
| 434 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
---|
| 435 | # |
---|
[168] | 436 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
[149] | 437 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
---|
| 438 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
---|
| 439 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
---|
| 440 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
---|
| 441 | if [ Xload${Patch} != X ] ; then |
---|
| 442 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
---|
| 443 | eval load${Patch}=loaded |
---|
| 444 | fi |
---|
| 445 | done |
---|
| 446 | fi |
---|
| 447 | fi |
---|
| 448 | fi |
---|
[2] | 449 | fi |
---|
[149] | 450 | (( i=i+3 )) |
---|
[2] | 451 | done |
---|
| 452 | fi |
---|
[149] | 453 | # |
---|
[2] | 454 | if [ ${ActiveComp} = true ] ; then |
---|
| 455 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
---|
| 456 | fi |
---|
| 457 | done |
---|
| 458 | |
---|
| 459 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
---|
| 460 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
---|
| 461 | |
---|
| 462 | ######################################################################## |
---|
| 463 | # |
---|
| 464 | # DEFINE DATE FUNCTIONS |
---|
| 465 | # |
---|
| 466 | ######################################################################## |
---|
| 467 | |
---|
| 468 | # Give the end of the next $1 period from $2 date |
---|
| 469 | function create_ts_next_date { |
---|
| 470 | IGCM_debug_PushStack "create_ts_next_date" $@ |
---|
[88] | 471 | typeset Length |
---|
[29] | 472 | case ${config_UserChoices_PeriodLength} in |
---|
| 473 | *Y|*y) |
---|
| 474 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
---|
| 475 | IGCM_date_GetYearMonth ${1} year month |
---|
[287] | 476 | year=$( IGCM_date_SupressZeros ${year} ) |
---|
[29] | 477 | (( Length=0 )) |
---|
| 478 | (( i=0 )) |
---|
| 479 | until [ $i -ge $PeriodLengthInYears ] ; do |
---|
| 480 | (( Length = Length + $( IGCM_date_DaysInYear $(( year + i + 1 )) ) )) |
---|
| 481 | (( i=i+1 )) |
---|
| 482 | done |
---|
| 483 | ;; |
---|
| 484 | *M|*m) |
---|
| 485 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
---|
| 486 | IGCM_date_GetYearMonth ${1} year month |
---|
[287] | 487 | year=$( IGCM_date_SupressZeros ${year} ) |
---|
[64] | 488 | (( year0 = year )) |
---|
[29] | 489 | if [ $(( month + 1 )) -lt 13 ] ; then |
---|
| 490 | month0=$(( month + 1 )) |
---|
[2] | 491 | else |
---|
[29] | 492 | month0=$(( month + 1 - 12 )) |
---|
| 493 | (( year = year0 + 1 )) |
---|
| 494 | fi |
---|
| 495 | (( Length=0 )) |
---|
| 496 | (( i=0 )) |
---|
| 497 | until [ $i -ge $PeriodLengthInMonths ] ; do |
---|
| 498 | if [ $(( month0 + i )) -lt 13 ] ; then |
---|
| 499 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month0 + i )) ) )) |
---|
| 500 | else |
---|
| 501 | (( year = year0 + 1 )) |
---|
| 502 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month0 + i - 12 )) ) )) |
---|
| 503 | fi |
---|
| 504 | (( i=i+1 )) |
---|
| 505 | done |
---|
| 506 | ;; |
---|
[2] | 507 | *D|*d) |
---|
[29] | 508 | Length=$( echo ${config_UserChoices_PeriodLength} | sed -e "s/[dD]//" ) ;; |
---|
[2] | 509 | *) |
---|
[380] | 510 | IGCM_debug_Exit "create_ts " ${config_UserChoices_PeriodLength} " invalid PeriodLength : choose in *Y, *M, *D." |
---|
[2] | 511 | IGCM_debug_Verif_Exit_Post ;; |
---|
| 512 | esac |
---|
| 513 | echo ${Length} |
---|
| 514 | |
---|
| 515 | IGCM_debug_PopStack "create_ts_next_date" |
---|
| 516 | } |
---|
| 517 | |
---|
| 518 | # Give the end of the actual $1 period from $2 date |
---|
| 519 | function create_ts_begin_date { |
---|
| 520 | IGCM_debug_PushStack "create_ts_begin_date" $@ |
---|
[88] | 521 | typeset Length |
---|
[29] | 522 | case ${config_UserChoices_PeriodLength} in |
---|
| 523 | *Y|*y) |
---|
| 524 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
---|
| 525 | IGCM_date_GetYearMonth ${1} year month |
---|
[287] | 526 | year=$( IGCM_date_SupressZeros ${year} ) |
---|
[29] | 527 | if [ X${2} = Xend ] ; then |
---|
| 528 | (( year = year - PeriodLengthInYears + 1)) |
---|
| 529 | fi |
---|
| 530 | (( Length=0 )) |
---|
| 531 | (( i=0 )) |
---|
| 532 | until [ $i -ge $PeriodLengthInYears ] ; do |
---|
| 533 | (( Length = Length + $( IGCM_date_DaysInYear $(( year + i )) ) )) |
---|
| 534 | (( i=i+1 )) |
---|
| 535 | done |
---|
| 536 | ;; |
---|
| 537 | *M|*m) |
---|
| 538 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
---|
| 539 | IGCM_date_GetYearMonth ${1} year month |
---|
[287] | 540 | year=$( IGCM_date_SupressZeros ${year} ) |
---|
[29] | 541 | if [ X${2} = Xend ] ; then |
---|
[64] | 542 | (( month = month - PeriodLengthInMonths + 1 )) |
---|
[29] | 543 | fi |
---|
[64] | 544 | (( year0 = year )) |
---|
[29] | 545 | if [ $month -le 0 ] ; then |
---|
[64] | 546 | (( month = month + 12 )) |
---|
[29] | 547 | year=$( printf "%04i\n" $(( year - 1 )) ) |
---|
| 548 | fi |
---|
| 549 | month=$( printf "%02i\n" ${month} ) |
---|
| 550 | (( Length=0 )) |
---|
| 551 | (( i=0 )) |
---|
| 552 | until [ $i -ge $PeriodLengthInMonths ] ; do |
---|
| 553 | if [ $(( month + i )) -lt 13 ] ; then |
---|
| 554 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month + i )) ) )) |
---|
| 555 | else |
---|
| 556 | (( year = year0 + 1 )) |
---|
| 557 | (( Length = Length + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) )) |
---|
| 558 | fi |
---|
| 559 | (( i=i+1 )) |
---|
| 560 | done |
---|
| 561 | ;; |
---|
[2] | 562 | *D|*d) |
---|
[29] | 563 | Length=$( echo ${config_UserChoices_PeriodLength} | sed -e "s/[dD]//" ) ;; |
---|
[2] | 564 | *) |
---|
[380] | 565 | IGCM_debug_Exit "create_ts " ${config_UserChoices_PeriodLength} " invalid PeriodLength : choose in *Y, *M, *D." |
---|
[2] | 566 | IGCM_debug_Verif_Exit_Post ;; |
---|
| 567 | esac |
---|
| 568 | echo ${Length} |
---|
| 569 | |
---|
| 570 | IGCM_debug_PopStack "create_ts_begin_date" |
---|
| 571 | } |
---|
| 572 | |
---|
| 573 | ######################################################################## |
---|
| 574 | # |
---|
| 575 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
---|
| 576 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
---|
| 577 | # |
---|
| 578 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
---|
| 579 | # - especially for IDRiS |
---|
| 580 | # - no special protection against "command too long" ! |
---|
| 581 | # - libIGCM_sys should handle that or modify following code part |
---|
| 582 | # |
---|
| 583 | ######################################################################## |
---|
| 584 | |
---|
| 585 | if [ ${StandAlone} != true ] ; then |
---|
| 586 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
---|
| 587 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
---|
| 588 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
---|
| 589 | |
---|
[149] | 590 | #if [ X${Running_Flag} = Xy ] ; then |
---|
| 591 | # # Time Series Job allready running |
---|
| 592 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
---|
| 593 | # exit |
---|
| 594 | #fi |
---|
[2] | 595 | # Now run.card know we are running |
---|
[149] | 596 | |
---|
| 597 | |
---|
| 598 | |
---|
| 599 | |
---|
[2] | 600 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
[149] | 601 | |
---|
| 602 | |
---|
| 603 | |
---|
| 604 | |
---|
| 605 | |
---|
[2] | 606 | # Get information from last execution |
---|
[149] | 607 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
| 608 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
| 609 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
[2] | 610 | fi |
---|
| 611 | |
---|
| 612 | # Is it the first submission or not ? |
---|
[149] | 613 | |
---|
| 614 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
---|
[2] | 615 | # First Time Series Submission |
---|
| 616 | FIRST_PASS=TRUE |
---|
[29] | 617 | Length=$( create_ts_begin_date ${DateBegin} begin) |
---|
[2] | 618 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
---|
| 619 | else |
---|
| 620 | # Last Completed Time Series |
---|
| 621 | FIRST_PASS=FALSE |
---|
| 622 | DATE_FIN_JOB_B=${CompletedFlag} |
---|
| 623 | date=${DateBegin}_${DATE_FIN_JOB_B} |
---|
| 624 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 625 | # |
---|
| 626 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 627 | # |
---|
| 628 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 629 | # |
---|
[81] | 630 | #set -A liste_file |
---|
| 631 | unset liste_file |
---|
[2] | 632 | # |
---|
| 633 | file_path=${R_SAVE}/${comp}/Analyse |
---|
| 634 | # |
---|
| 635 | i=0 |
---|
| 636 | file=${NULL_STR} |
---|
| 637 | # |
---|
| 638 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 639 | # |
---|
| 640 | # Determine in which output can we find file |
---|
| 641 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
| 642 | # |
---|
| 643 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 644 | case ${FlagDir} in |
---|
[29] | 645 | *Y) TS_Dir=TS_YE ;; |
---|
| 646 | *M) TS_Dir=TS_MO ;; |
---|
| 647 | *D) TS_Dir=TS_DA ;; |
---|
| 648 | HF) TS_Dir=TS_HF ;; |
---|
[265] | 649 | 3H) TS_Dir=TS_HF ;; |
---|
[29] | 650 | INS) TS_Dir=TS_INS ;; |
---|
[2] | 651 | esac |
---|
| 652 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 653 | # |
---|
[81] | 654 | #set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 655 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
[2] | 656 | # |
---|
| 657 | done |
---|
| 658 | done |
---|
| 659 | if [ X${file} != X${NULL_STR} ] ; then |
---|
| 660 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
[409] | 661 | # Even if some files are missing we tried to continue |
---|
[441] | 662 | # Either ListVar in compname.card are asked but not present in original history file |
---|
[409] | 663 | # Either a previous TS task failed |
---|
[108] | 664 | ExitFlag=false |
---|
[2] | 665 | IGCM_debug_Verif_Exit_Post |
---|
| 666 | fi |
---|
| 667 | done |
---|
| 668 | # |
---|
| 669 | LEVEL=0 |
---|
| 670 | # |
---|
| 671 | fi |
---|
| 672 | |
---|
| 673 | ######################################################################## |
---|
| 674 | # |
---|
| 675 | # DEFINE LOOP PARAMETERS |
---|
| 676 | # |
---|
| 677 | ######################################################################## |
---|
| 678 | |
---|
| 679 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
| 680 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
| 681 | |
---|
| 682 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
| 683 | |
---|
| 684 | if [ ${DoJob} = true ] ; then |
---|
| 685 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
| 686 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
[29] | 687 | Length=$( create_ts_next_date ${DATE_COUNT} ) |
---|
[2] | 688 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
| 689 | done |
---|
| 690 | else |
---|
| 691 | NBRE_FILE_TOT=0 |
---|
| 692 | fi |
---|
| 693 | |
---|
| 694 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 695 | NBRE_TOUR=1 |
---|
| 696 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
| 697 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
| 698 | else |
---|
| 699 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
| 700 | fi |
---|
| 701 | |
---|
| 702 | CURRENT_LOOP=1 |
---|
| 703 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
| 704 | # WE HAVE 3 LEVELS |
---|
| 705 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 706 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 707 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 708 | |
---|
| 709 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
| 710 | |
---|
| 711 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 712 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 713 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
| 714 | |
---|
| 715 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
| 716 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
| 717 | else |
---|
[29] | 718 | Length=$( create_ts_next_date ${DATE_FIN_JOB_B_LOOP} ) |
---|
[2] | 719 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 720 | fi |
---|
| 721 | |
---|
| 722 | DATE_FIN=${PeriodDateEnd} |
---|
| 723 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
| 724 | |
---|
| 725 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 726 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 727 | |
---|
| 728 | LEVEL=1 |
---|
| 729 | DEPOT="TRUE" |
---|
| 730 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
| 731 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 732 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 733 | |
---|
| 734 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
[29] | 735 | Length=$( create_ts_next_date ${DATE_FIN_JOB_B_LOOP} ) |
---|
[2] | 736 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 737 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
| 738 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
| 739 | else |
---|
[29] | 740 | Length=$( create_ts_next_date ${DATE_FIN} ) |
---|
[2] | 741 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 742 | fi |
---|
| 743 | |
---|
| 744 | (( TotLength = 0 )) |
---|
| 745 | COMPTEUR=1 |
---|
| 746 | DATE_LOOP=${DATE_COURANTE} |
---|
| 747 | |
---|
| 748 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
| 749 | # |
---|
[29] | 750 | Length=$( create_ts_next_date ${DATE_LOOP} ) |
---|
[2] | 751 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
| 752 | (( TotLength = TotLength + Length )) |
---|
| 753 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 754 | # |
---|
| 755 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 756 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
| 757 | |
---|
| 758 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 759 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 760 | DEPOT="FALSE" |
---|
| 761 | LEVEL=2 |
---|
| 762 | else |
---|
| 763 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
[149] | 764 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
[2] | 765 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 766 | |
---|
[29] | 767 | Length=$( create_ts_next_date ${DATE_FIN} ) |
---|
[2] | 768 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 769 | DATE_FIN=${PeriodDateEnd} |
---|
| 770 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 771 | |
---|
| 772 | LEVEL=3 |
---|
| 773 | DEPOT="TRUE" |
---|
| 774 | FLAG_B="TRUE" |
---|
| 775 | fi |
---|
| 776 | |
---|
| 777 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
| 778 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 779 | # |
---|
| 780 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 781 | # |
---|
| 782 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 783 | # |
---|
| 784 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 785 | # |
---|
| 786 | i=0 |
---|
| 787 | # |
---|
| 788 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 789 | # |
---|
| 790 | # Determine in which output can we find file |
---|
| 791 | # IE : Output/MO or Output/DA or ... |
---|
| 792 | # |
---|
| 793 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 794 | case ${FlagDir} in |
---|
[29] | 795 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
| 796 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
[2] | 797 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
| 798 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
[265] | 799 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
[2] | 800 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
| 801 | *) |
---|
| 802 | IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
| 803 | IGCM_sys_Exit "Job create_ts" ;; |
---|
| 804 | esac |
---|
| 805 | |
---|
| 806 | # Initialize array |
---|
[81] | 807 | #set -A liste_file |
---|
| 808 | #set -A liste_file_tmp |
---|
| 809 | unset liste_file |
---|
| 810 | unset liste_file_tmp |
---|
[2] | 811 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
| 812 | |
---|
| 813 | COMPTEUR=1 |
---|
| 814 | DATE_LOOP=${DATE_COURANTE} |
---|
| 815 | |
---|
| 816 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
| 817 | # |
---|
[29] | 818 | Length1=$( create_ts_begin_date ${DATE_LOOP} end) |
---|
[2] | 819 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
| 820 | |
---|
[29] | 821 | Length2=$( create_ts_next_date ${DATE_LOOP} end) |
---|
[2] | 822 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
| 823 | |
---|
[81] | 824 | #set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 825 | #set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 826 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 827 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
[2] | 828 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 829 | # |
---|
| 830 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 831 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
| 832 | |
---|
| 833 | # Get selected files |
---|
| 834 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
| 835 | IGCM_debug_Verif_Exit_Post |
---|
| 836 | |
---|
| 837 | # Apply IGCM_Patch if needed |
---|
[168] | 838 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
[149] | 839 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 840 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
| 841 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 842 | IGCM_${Patch} ${file_t} |
---|
[409] | 843 | IGCM_debug_Verif_Exit_Post |
---|
[149] | 844 | done |
---|
[2] | 845 | done |
---|
[149] | 846 | fi |
---|
[2] | 847 | fi |
---|
| 848 | |
---|
| 849 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
| 850 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
[29] | 851 | Length=$( create_ts_begin_date ${DATE_COURANTE} end) |
---|
[2] | 852 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
| 853 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
| 854 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
| 855 | |
---|
| 856 | liste_coord=" " |
---|
| 857 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
| 858 | liste_coord=${liste_coord}${axis}"," |
---|
| 859 | done |
---|
| 860 | |
---|
| 861 | # Time axis must be the last dimension |
---|
| 862 | time_axis=${axis} |
---|
| 863 | |
---|
| 864 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
| 865 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 866 | # |
---|
| 867 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 868 | # |
---|
| 869 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
| 870 | # WE CONCATENATE WITH EXISTING FILES |
---|
| 871 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
| 872 | file2=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 873 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
| 874 | IGCM_sys_ncrcat --hst ${file1} ${file2} ${file_out} |
---|
| 875 | # |
---|
| 876 | IGCM_sys_Rm ${file1} ${file2} |
---|
[441] | 877 | ExitFlag=false |
---|
[2] | 878 | fi |
---|
[287] | 879 | |
---|
[2] | 880 | # |
---|
| 881 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
| 882 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
| 883 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 884 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
[287] | 885 | # |
---|
[2] | 886 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 887 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
[287] | 888 | # |
---|
[441] | 889 | if ( [ ${FlagDir} = "1M" ] && [ -f ${file_out} ] ) ; then |
---|
[287] | 890 | file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc |
---|
| 891 | file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc |
---|
| 892 | # |
---|
[388] | 893 | # Compute yearly average considering calendar |
---|
| 894 | # and set date of the mid year to 01/07 at 00:00 |
---|
| 895 | IGCM_sys_cdo -settime,00:00 -setday,1 -setmon,7 -settunits,days -divdpy -yearsum -muldpm -selvar,${var} ${file_out} ${file_out_YE} |
---|
[382] | 896 | # Extract all ancillary variables except $var, they will be appended after the cdo command |
---|
| 897 | # Needed because cdo applies calculs on all variables |
---|
| 898 | IGCM_sys_ncks -Oh -x -v ${var} ${file_out} ${file_out_YE%%.nc}_tmp1.nc |
---|
[388] | 899 | # This will remove the time axis because cdo rewrites severely with only considered useful variables |
---|
[409] | 900 | IGCM_sys_cdo -mulc,1 ${file_out_YE%%.nc}_tmp1.nc ${file_out_YE%%.nc}_tmp2.nc |
---|
[388] | 901 | if [ $? -eq 0 ] ; then |
---|
| 902 | # Now append all ancillary variables if previous cdo operator ok |
---|
| 903 | IGCM_sys_ncks -h -A ${file_out_YE%%.nc}_tmp2.nc ${file_out_YE} |
---|
| 904 | fi |
---|
| 905 | |
---|
[382] | 906 | # Put global history attribut |
---|
| 907 | IGCM_sys_ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" ${file_out_YE} |
---|
[287] | 908 | # |
---|
| 909 | eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE} |
---|
| 910 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE} |
---|
[389] | 911 | IGCM_sys_Rm ${file_out_YE%%.nc}_tmp*.nc |
---|
[287] | 912 | fi |
---|
| 913 | # |
---|
[389] | 914 | IGCM_sys_Rm ${file_out} |
---|
[441] | 915 | ExitFlag=false |
---|
[2] | 916 | # |
---|
| 917 | fi |
---|
| 918 | # |
---|
| 919 | done # for var in ${liste_var} ; do |
---|
| 920 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
| 921 | done # for file in ${liste_file_brut} do |
---|
| 922 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
| 923 | # GO AHEAD IN DEEPEST LOOP |
---|
| 924 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
| 925 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
| 926 | # FINISH |
---|
| 927 | |
---|
| 928 | # DODS copy |
---|
| 929 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[287] | 930 | for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do |
---|
[67] | 931 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 932 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
[2] | 933 | done |
---|
| 934 | done |
---|
| 935 | |
---|
| 936 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
[213] | 937 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
[2] | 938 | |
---|
[213] | 939 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
---|
[2] | 940 | export listVarEnv |
---|
| 941 | |
---|
| 942 | #D- |
---|
| 943 | # -------------------------------------------------------------------- |
---|
| 944 | #D- Test if all was right |
---|
| 945 | # -------------------------------------------------------------------- |
---|
| 946 | IGCM_debug_Verif_Exit_Post |
---|
| 947 | # -------------------------------------------------------------------- |
---|
| 948 | #D- Submit MONITORING |
---|
| 949 | # -------------------------------------------------------------------- |
---|
[414] | 950 | if ( [ X${TsTask} = X2D ] || [ X${TsTask} = X3D ] || [ X${TsTask} = X ] ) ; then |
---|
[387] | 951 | Script_Post_Output=monitoring.${PeriodDateEnd} |
---|
| 952 | IGCM_sys_QsubPost monitoring |
---|
| 953 | fi |
---|
[2] | 954 | |
---|
| 955 | #D- |
---|
| 956 | # -------------------------------------------------------------------- |
---|
| 957 | #D- Update the run.card |
---|
| 958 | # -------------------------------------------------------------------- |
---|
| 959 | if [ ${StandAlone} != true ] ; then |
---|
| 960 | # Put in run.card end period of time series |
---|
[279] | 961 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
[2] | 962 | # We have finish the job ! |
---|
| 963 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
| 964 | fi |
---|
[203] | 965 | |
---|
| 966 | # Clean RUN_DIR_PATH (necessary for cesium) |
---|
| 967 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
| 968 | |
---|
[2] | 969 | date |
---|