[314] | 1 | #-Q- cesium #!/bin/ksh |
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| 2 | #-Q- cesium ###################### |
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| 3 | #-Q- cesium ## CESIUM CEA ## |
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| 4 | #-Q- cesium ###################### |
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| 5 | #-Q- cesium #MSUB -r TS # Nom du job |
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| 6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
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| 7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
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| 8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
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| 9 | #-Q- cesium #MSUB -E "-j o" |
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| 10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
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[622] | 11 | #-Q- curie ###################### |
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| 12 | #-Q- curie ## CURIE TGCC/CEA ## |
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| 13 | #-Q- curie ###################### |
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| 14 | #-Q- curie #MSUB -r TS # Nom du job |
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| 15 | #-Q- curie #MSUB -eo |
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| 16 | #-Q- curie #MSUB -n 1 # Reservation du processus |
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| 17 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
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[741] | 18 | #-Q- curie #MSUB -q xlarge |
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[704] | 19 | #-Q- curie #MSUB -Q normal |
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[681] | 20 | #-Q- curie set +x |
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[2] | 21 | #-Q- platine #!/usr/bin/ksh |
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[196] | 22 | #-Q- platine ################### |
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[2] | 23 | #-Q- platine ## PLATINE CEA ## |
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[196] | 24 | #-Q- platine ################### |
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[2] | 25 | #-Q- platine #BSUB -J TS # Nom du job |
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| 26 | #-Q- platine #BSUB -N # message a la fin du job |
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| 27 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 28 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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[149] | 29 | #-Q- platine #BSUB -q post # Passage en queue post |
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[426] | 30 | #-Q- platine #BSUB -L /bin/ksh |
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[59] | 31 | #-Q- sx8brodie #!/bin/ksh |
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[2] | 32 | #-Q- sx8brodie ####################### |
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| 33 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 34 | #-Q- sx8brodie ####################### |
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[58] | 35 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 36 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
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[58] | 37 | #-Q- sx8brodie # Nom du travail LoadLeveler |
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[62] | 38 | #-Q- sx8brodie # @ job_name = TS |
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[58] | 39 | #-Q- sx8brodie # Fichier de sortie standard du travail |
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| 40 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
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| 41 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
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| 42 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
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| 43 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 44 | #-Q- sx8brodie # @ notification = error |
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[424] | 45 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[386] | 46 | #-Q- sx8brodie # @ queue |
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[68] | 47 | #-Q- aix6 #!/bin/ksh |
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| 48 | #-Q- aix6 ####################### |
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| 49 | #-Q- aix6 ## VARGAS IDRIS ## |
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| 50 | #-Q- aix6 ####################### |
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| 51 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
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[220] | 52 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
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[68] | 53 | #-Q- aix6 # Nom du travail LoadLeveler |
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[78] | 54 | #-Q- aix6 # @ job_name = TS |
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[68] | 55 | #-Q- aix6 # Fichier de sortie standard du travail |
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| 56 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
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| 57 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
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| 58 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
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| 59 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 60 | #-Q- aix6 # @ notification = error |
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[409] | 61 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[68] | 62 | #-Q- aix6 # @ queue |
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[386] | 63 | #-Q- ulam #!/bin/ksh |
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| 64 | #-Q- ulam ####################### |
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| 65 | #-Q- ulam ## ULAM IDRIS ## |
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| 66 | #-Q- ulam ####################### |
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| 67 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
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| 68 | #-Q- ulam # @ wall_clock_limit = 20:00:00 |
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| 69 | #-Q- ulam # Nom du travail LoadLeveler |
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| 70 | #-Q- ulam # @ job_name = TS |
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| 71 | #-Q- ulam # Fichier de sortie standard du travail |
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| 72 | #-Q- ulam # @ output = $(job_name).$(jobid) |
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| 73 | #-Q- ulam # Fichier de sortie d'erreur du travail |
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| 74 | #-Q- ulam # @ error = $(job_name).$(jobid) |
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| 75 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
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| 76 | #-Q- ulam # @ notification = error |
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[409] | 77 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
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[386] | 78 | #-Q- ulam # @ queue |
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[2] | 79 | #-Q- sx8mercure #!/bin/ksh |
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| 80 | #-Q- sx8mercure ###################### |
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| 81 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 82 | #-Q- sx8mercure ###################### |
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| 83 | #-Q- sx8mercure #PBS -N TS # Nom du job |
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| 84 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 85 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 86 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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[189] | 87 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures |
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[299] | 88 | #-Q- sx8mercure #PBS -q scalaire |
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[640] | 89 | #-Q- sx8mercure #PBS -r n |
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[172] | 90 | #-Q- sx9mercure #!/bin/ksh |
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[616] | 91 | #-Q- sx9mercure ###################### |
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| 92 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
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| 93 | #-Q- sx9mercure ###################### |
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| 94 | #-Q- sx9mercure #PBS -N TS # Nom du job |
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| 95 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
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| 96 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 97 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 98 | #-Q- sx9mercure #PBS -l elapstim_req=24:00:00 # Limite temps a 2 heures |
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| 99 | #-Q- sx9mercure #PBS -q scalaire |
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[640] | 100 | #-Q- sx9mercure #PBS -r n |
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[222] | 101 | #-Q- titane #!/bin/ksh |
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| 102 | #-Q- titane ###################### |
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| 103 | #-Q- titane ## TITANE CEA ## |
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| 104 | #-Q- titane ###################### |
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| 105 | #-Q- titane #MSUB -r TS # Nom du job |
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[544] | 106 | #-Q- titane #MSUB -eo |
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[222] | 107 | #-Q- titane #MSUB -n 1 # Reservation du processus |
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| 108 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
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[544] | 109 | #-Q- titane #MSUB -q mono |
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[643] | 110 | #-Q- titane #MSUB -E '-rn' |
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[287] | 111 | #-Q- lxiv8 ###################### |
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| 112 | #-Q- lxiv8 ## OBELIX LSCE ## |
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| 113 | #-Q- lxiv8 ###################### |
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| 114 | #-Q- lxiv8 #PBS -N TS |
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| 115 | #-Q- lxiv8 #PBS -m a |
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| 116 | #-Q- lxiv8 #PBS -j oe |
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| 117 | #-Q- lxiv8 #PBS -q medium |
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| 118 | #-Q- lxiv8 #PBS -o TS.$$ |
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| 119 | #-Q- lxiv8 #PBS -S /bin/ksh |
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[2] | 120 | #-Q- default #!/bin/ksh |
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| 121 | #-Q- default ################## |
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| 122 | #-Q- default ## DEFAULT HOST ## |
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| 123 | #-Q- default ################## |
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| 124 | |
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[373] | 125 | #************************************************************** |
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| 126 | # Author: Sebastien Denvil |
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| 127 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 128 | # $Revision:: $ Revision of last commit |
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| 129 | # $Author:: $ Author of last commit |
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| 130 | # $Date:: $ Date of last commit |
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[108] | 131 | # IPSL (2006) |
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| 132 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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[373] | 133 | # |
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| 134 | #************************************************************** |
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[108] | 135 | |
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| 136 | #set -eu |
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[2] | 137 | #set -vx |
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| 138 | |
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| 139 | date |
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| 140 | |
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| 141 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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[108] | 142 | #-Q- aix6 export OMP_NUM_THREADS=1 |
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[386] | 143 | #-Q- ulam export OMP_NUM_THREADS=1 |
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[2] | 144 | |
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[712] | 145 | #D- Task type (computing or post-processing) |
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| 146 | TaskType=post-processing |
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| 147 | |
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[2] | 148 | ######################################################################## |
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| 149 | |
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| 150 | #D- Flag to determine if this job in a standalone mode |
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| 151 | #D- Default : value from AA_job if any |
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| 152 | StandAlone=${StandAlone:=true} |
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| 153 | |
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[554] | 154 | #D- Path to libIGCM |
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[206] | 155 | #D- Default : value from AA_job if any |
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[554] | 156 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
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| 157 | # WARNING you must check MirrorlibIGCM variable in sys library. |
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| 158 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
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| 159 | # WARNING of your running libIGCM directory. |
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[229] | 160 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
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[206] | 161 | |
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| 162 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
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[213] | 163 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
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[209] | 164 | CompletedFlag=${CompletedFlag:=} |
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[135] | 165 | |
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[213] | 166 | #D- Flag to determine task type this script will perform. |
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| 167 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
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| 168 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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[257] | 169 | TsTask=${TsTask:=2D} |
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[267] | 170 | if [ X${TsTask} = Xempty ] ; then |
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| 171 | TsTask="" |
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| 172 | fi |
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[213] | 173 | |
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| 174 | #D- Flag to determine if rebuild process has been performed asynchronously |
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| 175 | #D- Possible value true or false. |
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| 176 | #D- If true raw files has allready been patched by rebuild job |
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| 177 | #D- If false create_ts will patch the raw files |
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| 178 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
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| 179 | RebuildFrequency=${RebuildFrequency:=true} |
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| 180 | |
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[2] | 181 | #D- Flag to determine job's output directory |
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| 182 | #D- Default : value from libIGCM_post.ksh if any |
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[370] | 183 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
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[2] | 184 | |
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| 185 | #D- Increased verbosity (1, 2, 3) |
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| 186 | #D- Default : value from AA_job if any |
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| 187 | Verbosity=${Verbosity:=3} |
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| 188 | |
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| 189 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 190 | #D- Default : value from AA_job if any |
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| 191 | DEBUG_debug=${DEBUG_debug:=false} |
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| 192 | |
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| 193 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 194 | #D- Default : value from atmospheric driver if any |
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[254] | 195 | RESOL_ATM=ALL |
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[2] | 196 | |
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[257] | 197 | #D- Flag to determine surface resolution |
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| 198 | #D- Default : value from surface driver if any |
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| 199 | RESOL_SRF=ALL |
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| 200 | |
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| 201 | #D- Flag to determine surface resolution |
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| 202 | #D- Default : value from surface driver if any |
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| 203 | RESOL_SBG=ALL |
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| 204 | |
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[2] | 205 | #D- TEMPORARY Flag to determine ocean resolution |
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| 206 | #D- Default : value from ocean driver if any |
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| 207 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 208 | |
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| 209 | #D- TEMPORARY Flag to determine ice resolution |
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| 210 | #D- Default : value from ice driver if any |
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| 211 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 212 | |
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[178] | 213 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 214 | #D- Default : value from ice driver if any |
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| 215 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
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| 216 | |
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[2] | 217 | ######################################################################## |
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| 218 | |
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[108] | 219 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 220 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 221 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 222 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 223 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 224 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 225 | #------- |
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| 226 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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[731] | 227 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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[2] | 228 | |
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| 229 | ######################################################################## |
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| 230 | |
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| 231 | #set -vx |
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| 232 | |
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| 233 | # Useful cleaning function |
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| 234 | MENAGE () |
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[81] | 235 | { |
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| 236 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
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[2] | 237 | } |
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| 238 | |
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| 239 | ######################################################################## |
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| 240 | |
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[202] | 241 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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[2] | 242 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 243 | |
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[436] | 244 | # ------------------------------------------------------------------ |
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| 245 | # Test if all was right before proceeding further |
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| 246 | # ------------------------------------------------------------------ |
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| 247 | IGCM_debug_Verif_Exit_Post |
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| 248 | |
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[2] | 249 | if [ ${StandAlone} = true ] ; then |
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| 250 | CARD_DIR=${SUBMIT_DIR} |
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| 251 | else |
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[647] | 252 | CARD_DIR=${RUN_DIR_PATH} |
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[640] | 253 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 254 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 255 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 256 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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[2] | 257 | fi |
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| 258 | |
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[591] | 259 | #================================== |
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[2] | 260 | # First of all |
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| 261 | # |
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[727] | 262 | # Read libIGCM compatibility version in config.card |
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| 263 | # Read UserChoices section |
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| 264 | # Read Ensemble section |
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| 265 | # Read Post section |
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| 266 | # Define all netcdf output directories |
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[591] | 267 | #================================== |
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[727] | 268 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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[591] | 269 | |
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| 270 | #================================== |
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[633] | 271 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
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| 272 | if [ X${PackDefault} = Xtrue ] ; then |
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| 273 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
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| 274 | else |
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| 275 | config_Post_PackFrequency=NONE |
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| 276 | fi |
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[591] | 277 | |
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| 278 | #================================== |
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| 279 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
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| 280 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
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| 281 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
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| 282 | fi |
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| 283 | |
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[2] | 284 | # |
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[149] | 285 | # Determine component to take care of depending on kind of task create_ts will perform |
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[2] | 286 | # |
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[392] | 287 | [ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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[2] | 288 | # |
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[149] | 289 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
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| 290 | # |
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[309] | 291 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
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[301] | 292 | |
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[2] | 293 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 294 | # |
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| 295 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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[149] | 296 | # |
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| 297 | # Determine Dimension of the produced time series : 2D or 3D |
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| 298 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
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| 299 | Dimension=2D |
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| 300 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
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| 301 | Dimension=3D |
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| 302 | else |
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| 303 | Dimension="" |
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| 304 | fi |
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[2] | 305 | |
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[441] | 306 | # ------------------------------------------------------------------ |
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| 307 | #D- Test if all was right before entering the loop |
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| 308 | # ------------------------------------------------------------------ |
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| 309 | IGCM_debug_Verif_Exit_Post |
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[149] | 310 | |
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[2] | 311 | ######################################################################## |
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| 312 | # |
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| 313 | # Depending on requested time series fill following variables : |
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| 314 | # |
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| 315 | # - LISTE_FILE_${comp}[*] |
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| 316 | # - LISTE_VARS_${file}[*] |
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| 317 | # - LISTE_AXIS_${file}[*] |
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| 318 | # - LISTE_PATCH_${file}[*] |
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| 319 | ######################################################################## |
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| 320 | |
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| 321 | # |
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| 322 | # For each selected component determine which files need post-processing |
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| 323 | # |
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| 324 | DoJob=false |
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| 325 | for comp in ${config_ListOfComponents[*]} ; do |
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| 326 | # |
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| 327 | ActiveComp=false |
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| 328 | # |
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| 329 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 330 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 331 | # |
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| 332 | card=${CARD_DIR}/COMP/${compname}.card |
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[149] | 333 | |
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[2] | 334 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 335 | # |
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| 336 | ListFilesName=${compname}_OutputFiles_List |
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| 337 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 338 | # |
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| 339 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 340 | # |
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| 341 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 342 | # |
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| 343 | # INITIALISATION |
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| 344 | # |
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[149] | 345 | typeset i |
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[392] | 346 | if [ ${FlagToRead} ] ; then |
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[149] | 347 | ((NbFiles=${FlagToRead})) |
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[243] | 348 | ((i=${NbFiles})) |
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[149] | 349 | else |
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| 350 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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[243] | 351 | i=2 |
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[149] | 352 | fi |
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[2] | 353 | # |
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[243] | 354 | until [ $i -gt $NbFiles ]; do |
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[2] | 355 | # |
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[243] | 356 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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[2] | 357 | # |
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| 358 | if [ X${flag_post} != XNONE ] ; then |
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| 359 | # |
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[149] | 360 | # For each comp and each file who needs post-processing |
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| 361 | # determine which variables need time series. |
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| 362 | # |
---|
| 363 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
---|
[236] | 364 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
---|
| 365 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
---|
[149] | 366 | # |
---|
[236] | 367 | # If TimeSeriesVars list is empty we skip |
---|
| 368 | # |
---|
[149] | 369 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
---|
| 370 | # |
---|
| 371 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
[236] | 372 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
---|
[149] | 373 | (( i=i+3 )) |
---|
| 374 | continue |
---|
| 375 | # |
---|
| 376 | fi |
---|
[2] | 377 | # |
---|
[236] | 378 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
---|
| 379 | # |
---|
[237] | 380 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
---|
[236] | 381 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
[237] | 382 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
---|
[236] | 383 | (( i=i+3 )) |
---|
| 384 | continue |
---|
| 385 | fi |
---|
| 386 | # |
---|
| 387 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
---|
[149] | 388 | # |
---|
[189] | 389 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
---|
[149] | 390 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
---|
| 391 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
---|
| 392 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
---|
| 393 | (( i=i+3 )) |
---|
| 394 | continue |
---|
| 395 | fi |
---|
| 396 | fi |
---|
| 397 | # |
---|
[236] | 398 | # Now on we know we have things to do |
---|
| 399 | # |
---|
| 400 | |
---|
| 401 | # |
---|
[149] | 402 | # We need coordinates axis to properly fill produced time series |
---|
| 403 | # |
---|
| 404 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
---|
| 405 | # |
---|
| 406 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
---|
| 407 | # |
---|
| 408 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
---|
| 409 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
---|
| 410 | (( i=i+3 )) |
---|
| 411 | continue |
---|
| 412 | # |
---|
| 413 | fi |
---|
| 414 | # |
---|
| 415 | # We need LIST of variables not allready produced (useful for standalone mode) |
---|
| 416 | # |
---|
| 417 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
---|
| 418 | case ${FlagDir} in |
---|
| 419 | *Y) TS_Dir=TS_YE ;; |
---|
| 420 | *M) TS_Dir=TS_MO ;; |
---|
| 421 | *D) TS_Dir=TS_DA ;; |
---|
| 422 | HF) TS_Dir=TS_HF ;; |
---|
[265] | 423 | 3H) TS_Dir=TS_HF ;; |
---|
[149] | 424 | INS) TS_Dir=TS_INS ;; |
---|
| 425 | esac |
---|
| 426 | # |
---|
| 427 | count=0 |
---|
| 428 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
---|
| 429 | # |
---|
| 430 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 431 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
---|
| 432 | # |
---|
| 433 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
---|
| 434 | if [ ! $? = 0 ] ; then |
---|
| 435 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
---|
| 436 | ActiveComp=true |
---|
| 437 | (( count = count + 1 )) |
---|
| 438 | fi |
---|
| 439 | done |
---|
| 440 | # |
---|
| 441 | if [ ${count} -gt 0 ] ; then |
---|
| 442 | # |
---|
| 443 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
---|
| 444 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
---|
| 445 | # |
---|
[168] | 446 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
[149] | 447 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
---|
| 448 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
---|
| 449 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
---|
| 450 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
---|
| 451 | if [ Xload${Patch} != X ] ; then |
---|
| 452 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
---|
| 453 | eval load${Patch}=loaded |
---|
| 454 | fi |
---|
| 455 | done |
---|
| 456 | fi |
---|
| 457 | fi |
---|
| 458 | fi |
---|
[2] | 459 | fi |
---|
[149] | 460 | (( i=i+3 )) |
---|
[2] | 461 | done |
---|
| 462 | fi |
---|
[149] | 463 | # |
---|
[2] | 464 | if [ ${ActiveComp} = true ] ; then |
---|
| 465 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
---|
| 466 | fi |
---|
| 467 | done |
---|
| 468 | |
---|
| 469 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
---|
| 470 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
---|
| 471 | |
---|
| 472 | ######################################################################## |
---|
| 473 | # |
---|
| 474 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
---|
| 475 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
---|
| 476 | # |
---|
| 477 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
---|
| 478 | # - especially for IDRiS |
---|
| 479 | # - no special protection against "command too long" ! |
---|
| 480 | # - libIGCM_sys should handle that or modify following code part |
---|
| 481 | # |
---|
| 482 | ######################################################################## |
---|
| 483 | |
---|
| 484 | if [ ${StandAlone} != true ] ; then |
---|
| 485 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
---|
| 486 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
---|
| 487 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
---|
| 488 | |
---|
[149] | 489 | #if [ X${Running_Flag} = Xy ] ; then |
---|
| 490 | # # Time Series Job allready running |
---|
| 491 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
---|
| 492 | # exit |
---|
| 493 | #fi |
---|
[2] | 494 | # Now run.card know we are running |
---|
[149] | 495 | |
---|
| 496 | |
---|
| 497 | |
---|
| 498 | |
---|
[2] | 499 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
[149] | 500 | |
---|
| 501 | |
---|
| 502 | |
---|
| 503 | |
---|
| 504 | |
---|
[2] | 505 | # Get information from last execution |
---|
[149] | 506 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
| 507 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
| 508 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
[2] | 509 | fi |
---|
| 510 | |
---|
| 511 | # Is it the first submission or not ? |
---|
[149] | 512 | |
---|
| 513 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
---|
[2] | 514 | # First Time Series Submission |
---|
| 515 | FIRST_PASS=TRUE |
---|
[554] | 516 | Length=$( IGCM_date_DaysInPreviousPeriod ${DateBegin} ${config_UserChoices_PeriodLength} begin) |
---|
[2] | 517 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
---|
| 518 | else |
---|
| 519 | # Last Completed Time Series |
---|
| 520 | FIRST_PASS=FALSE |
---|
| 521 | DATE_FIN_JOB_B=${CompletedFlag} |
---|
| 522 | date=${DateBegin}_${DATE_FIN_JOB_B} |
---|
| 523 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 524 | # |
---|
| 525 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 526 | # |
---|
| 527 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 528 | # |
---|
[81] | 529 | #set -A liste_file |
---|
| 530 | unset liste_file |
---|
[2] | 531 | # |
---|
| 532 | file_path=${R_SAVE}/${comp}/Analyse |
---|
| 533 | # |
---|
| 534 | i=0 |
---|
| 535 | file=${NULL_STR} |
---|
| 536 | # |
---|
| 537 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 538 | # |
---|
| 539 | # Determine in which output can we find file |
---|
| 540 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
| 541 | # |
---|
| 542 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 543 | case ${FlagDir} in |
---|
[29] | 544 | *Y) TS_Dir=TS_YE ;; |
---|
| 545 | *M) TS_Dir=TS_MO ;; |
---|
| 546 | *D) TS_Dir=TS_DA ;; |
---|
| 547 | HF) TS_Dir=TS_HF ;; |
---|
[265] | 548 | 3H) TS_Dir=TS_HF ;; |
---|
[29] | 549 | INS) TS_Dir=TS_INS ;; |
---|
[2] | 550 | esac |
---|
| 551 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 552 | # |
---|
[81] | 553 | #set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
| 554 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
[2] | 555 | # |
---|
| 556 | done |
---|
| 557 | done |
---|
| 558 | if [ X${file} != X${NULL_STR} ] ; then |
---|
| 559 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
[409] | 560 | # Even if some files are missing we tried to continue |
---|
[441] | 561 | # Either ListVar in compname.card are asked but not present in original history file |
---|
[409] | 562 | # Either a previous TS task failed |
---|
[108] | 563 | ExitFlag=false |
---|
[2] | 564 | IGCM_debug_Verif_Exit_Post |
---|
| 565 | fi |
---|
| 566 | done |
---|
| 567 | # |
---|
| 568 | LEVEL=0 |
---|
| 569 | # |
---|
| 570 | fi |
---|
| 571 | |
---|
| 572 | ######################################################################## |
---|
| 573 | # |
---|
| 574 | # DEFINE LOOP PARAMETERS |
---|
| 575 | # |
---|
| 576 | ######################################################################## |
---|
| 577 | |
---|
| 578 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
| 579 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
| 580 | |
---|
| 581 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
| 582 | |
---|
| 583 | if [ ${DoJob} = true ] ; then |
---|
| 584 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
| 585 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
[554] | 586 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_COUNT} ${config_UserChoices_PeriodLength} ) |
---|
[2] | 587 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
| 588 | done |
---|
| 589 | else |
---|
| 590 | NBRE_FILE_TOT=0 |
---|
| 591 | fi |
---|
| 592 | |
---|
| 593 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 594 | NBRE_TOUR=1 |
---|
| 595 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
| 596 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
| 597 | else |
---|
| 598 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
| 599 | fi |
---|
| 600 | |
---|
| 601 | CURRENT_LOOP=1 |
---|
| 602 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
| 603 | # WE HAVE 3 LEVELS |
---|
| 604 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 605 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 606 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
| 607 | |
---|
| 608 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
| 609 | |
---|
| 610 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
| 611 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
| 612 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
| 613 | |
---|
| 614 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
| 615 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
| 616 | else |
---|
[554] | 617 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
[2] | 618 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 619 | fi |
---|
| 620 | |
---|
| 621 | DATE_FIN=${PeriodDateEnd} |
---|
| 622 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
| 623 | |
---|
| 624 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 625 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 626 | |
---|
| 627 | LEVEL=1 |
---|
| 628 | DEPOT="TRUE" |
---|
| 629 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
| 630 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
| 631 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 632 | |
---|
| 633 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
[554] | 634 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
[2] | 635 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
| 636 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
| 637 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
| 638 | else |
---|
[554] | 639 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
[2] | 640 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 641 | fi |
---|
| 642 | |
---|
| 643 | (( TotLength = 0 )) |
---|
| 644 | COMPTEUR=1 |
---|
| 645 | DATE_LOOP=${DATE_COURANTE} |
---|
| 646 | |
---|
| 647 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
| 648 | # |
---|
[554] | 649 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
[2] | 650 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
| 651 | (( TotLength = TotLength + Length )) |
---|
| 652 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 653 | # |
---|
| 654 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 655 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
| 656 | |
---|
| 657 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 658 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
| 659 | DEPOT="FALSE" |
---|
| 660 | LEVEL=2 |
---|
| 661 | else |
---|
| 662 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
[149] | 663 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
[2] | 664 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
| 665 | |
---|
[554] | 666 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
[2] | 667 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
| 668 | DATE_FIN=${PeriodDateEnd} |
---|
| 669 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
| 670 | |
---|
| 671 | LEVEL=3 |
---|
| 672 | DEPOT="TRUE" |
---|
| 673 | FLAG_B="TRUE" |
---|
| 674 | fi |
---|
| 675 | |
---|
| 676 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
| 677 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 678 | # |
---|
| 679 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
| 680 | # |
---|
| 681 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
| 682 | # |
---|
| 683 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
| 684 | # |
---|
| 685 | i=0 |
---|
| 686 | # |
---|
| 687 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
| 688 | # |
---|
| 689 | # Determine in which output can we find file |
---|
| 690 | # IE : Output/MO or Output/DA or ... |
---|
| 691 | # |
---|
| 692 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
| 693 | case ${FlagDir} in |
---|
[29] | 694 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
| 695 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
[2] | 696 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
| 697 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
[265] | 698 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
[2] | 699 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
| 700 | *) |
---|
| 701 | IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
| 702 | IGCM_sys_Exit "Job create_ts" ;; |
---|
| 703 | esac |
---|
| 704 | |
---|
| 705 | # Initialize array |
---|
[81] | 706 | #set -A liste_file |
---|
| 707 | #set -A liste_file_tmp |
---|
| 708 | unset liste_file |
---|
| 709 | unset liste_file_tmp |
---|
[2] | 710 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
| 711 | |
---|
| 712 | COMPTEUR=1 |
---|
| 713 | DATE_LOOP=${DATE_COURANTE} |
---|
| 714 | |
---|
| 715 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
| 716 | # |
---|
[554] | 717 | Length1=$( IGCM_date_DaysInPreviousPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} end) |
---|
[2] | 718 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
| 719 | |
---|
[554] | 720 | Length2=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
[2] | 721 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
| 722 | |
---|
[81] | 723 | #set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 724 | #set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 725 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
| 726 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
[2] | 727 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
| 728 | # |
---|
| 729 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
| 730 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
| 731 | |
---|
| 732 | # Get selected files |
---|
| 733 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
| 734 | IGCM_debug_Verif_Exit_Post |
---|
| 735 | |
---|
| 736 | # Apply IGCM_Patch if needed |
---|
[168] | 737 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
[149] | 738 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
| 739 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
| 740 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
| 741 | IGCM_${Patch} ${file_t} |
---|
[409] | 742 | IGCM_debug_Verif_Exit_Post |
---|
[149] | 743 | done |
---|
[2] | 744 | done |
---|
[149] | 745 | fi |
---|
[2] | 746 | fi |
---|
| 747 | |
---|
| 748 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
| 749 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
[554] | 750 | Length=$( IGCM_date_DaysInPreviousPeriod ${DATE_COURANTE} ${config_UserChoices_PeriodLength} end) |
---|
[2] | 751 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
| 752 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
| 753 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
| 754 | |
---|
| 755 | liste_coord=" " |
---|
| 756 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
| 757 | liste_coord=${liste_coord}${axis}"," |
---|
| 758 | done |
---|
| 759 | |
---|
| 760 | # Time axis must be the last dimension |
---|
| 761 | time_axis=${axis} |
---|
| 762 | |
---|
| 763 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
| 764 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
| 765 | # |
---|
| 766 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
| 767 | # WE CONCATENATE WITH EXISTING FILES |
---|
| 768 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
| 769 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
[510] | 770 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
---|
[2] | 771 | # |
---|
[510] | 772 | IGCM_sys_Rm ${file1} |
---|
[514] | 773 | if [ ! "${DEPOT}" = "TRUE" ] ; then |
---|
| 774 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 775 | # "${file1} = file_before ? |
---|
| 776 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
| 777 | fi |
---|
| 778 | |
---|
[441] | 779 | ExitFlag=false |
---|
[510] | 780 | else |
---|
| 781 | # OR NOT |
---|
| 782 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
[2] | 783 | fi |
---|
[287] | 784 | |
---|
[2] | 785 | # |
---|
| 786 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
| 787 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
| 788 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
| 789 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
[287] | 790 | # |
---|
[2] | 791 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
| 792 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
[514] | 793 | if [ ! "X${file1}" = "X" ] ; then |
---|
| 794 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
| 795 | fi |
---|
[287] | 796 | # |
---|
[441] | 797 | if ( [ ${FlagDir} = "1M" ] && [ -f ${file_out} ] ) ; then |
---|
[287] | 798 | file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc |
---|
| 799 | file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc |
---|
| 800 | # |
---|
[388] | 801 | # Compute yearly average considering calendar |
---|
| 802 | # and set date of the mid year to 01/07 at 00:00 |
---|
| 803 | IGCM_sys_cdo -settime,00:00 -setday,1 -setmon,7 -settunits,days -divdpy -yearsum -muldpm -selvar,${var} ${file_out} ${file_out_YE} |
---|
[382] | 804 | # Extract all ancillary variables except $var, they will be appended after the cdo command |
---|
| 805 | # Needed because cdo applies calculs on all variables |
---|
| 806 | IGCM_sys_ncks -Oh -x -v ${var} ${file_out} ${file_out_YE%%.nc}_tmp1.nc |
---|
[388] | 807 | # This will remove the time axis because cdo rewrites severely with only considered useful variables |
---|
[616] | 808 | IGCM_sys_cdo -mulc,1 ${file_out_YE%%.nc}_tmp1.nc ${file_out_YE%%.nc}_tmp2.nc 2>/dev/null |
---|
[388] | 809 | if [ $? -eq 0 ] ; then |
---|
| 810 | # Now append all ancillary variables if previous cdo operator ok |
---|
| 811 | IGCM_sys_ncks -h -A ${file_out_YE%%.nc}_tmp2.nc ${file_out_YE} |
---|
| 812 | fi |
---|
| 813 | |
---|
[382] | 814 | # Put global history attribut |
---|
| 815 | IGCM_sys_ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" ${file_out_YE} |
---|
[287] | 816 | # |
---|
| 817 | eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE} |
---|
| 818 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE} |
---|
[389] | 819 | IGCM_sys_Rm ${file_out_YE%%.nc}_tmp*.nc |
---|
[287] | 820 | fi |
---|
| 821 | # |
---|
[389] | 822 | IGCM_sys_Rm ${file_out} |
---|
[441] | 823 | ExitFlag=false |
---|
[2] | 824 | # |
---|
| 825 | fi |
---|
| 826 | # |
---|
| 827 | done # for var in ${liste_var} ; do |
---|
| 828 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
| 829 | done # for file in ${liste_file_brut} do |
---|
| 830 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
| 831 | # GO AHEAD IN DEEPEST LOOP |
---|
| 832 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
| 833 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
| 834 | # FINISH |
---|
| 835 | |
---|
| 836 | # DODS copy |
---|
| 837 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[287] | 838 | for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do |
---|
[67] | 839 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
| 840 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
[2] | 841 | done |
---|
| 842 | done |
---|
| 843 | |
---|
| 844 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
[213] | 845 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
[2] | 846 | |
---|
[213] | 847 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
---|
[2] | 848 | export listVarEnv |
---|
| 849 | |
---|
| 850 | #D- |
---|
| 851 | # -------------------------------------------------------------------- |
---|
| 852 | #D- Test if all was right |
---|
| 853 | # -------------------------------------------------------------------- |
---|
| 854 | IGCM_debug_Verif_Exit_Post |
---|
| 855 | # -------------------------------------------------------------------- |
---|
| 856 | #D- Submit MONITORING |
---|
| 857 | # -------------------------------------------------------------------- |
---|
[414] | 858 | if ( [ X${TsTask} = X2D ] || [ X${TsTask} = X3D ] || [ X${TsTask} = X ] ) ; then |
---|
[387] | 859 | Script_Post_Output=monitoring.${PeriodDateEnd} |
---|
| 860 | IGCM_sys_QsubPost monitoring |
---|
| 861 | fi |
---|
[2] | 862 | |
---|
| 863 | #D- |
---|
| 864 | # -------------------------------------------------------------------- |
---|
| 865 | #D- Update the run.card |
---|
| 866 | # -------------------------------------------------------------------- |
---|
| 867 | if [ ${StandAlone} != true ] ; then |
---|
| 868 | # Put in run.card end period of time series |
---|
[279] | 869 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
[2] | 870 | # We have finish the job ! |
---|
| 871 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
| 872 | fi |
---|
[203] | 873 | |
---|
[590] | 874 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
[203] | 875 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
| 876 | |
---|
[2] | 877 | date |
---|