1 | #-Q- cesium #!/bin/ksh |
---|
2 | #-Q- cesium ###################### |
---|
3 | #-Q- cesium ## CESIUM CEA ## |
---|
4 | #-Q- cesium ###################### |
---|
5 | #-Q- cesium #MSUB -r TS # Nom du job |
---|
6 | #-Q- cesium #MSUB -N 1 # Reservation du noeud |
---|
7 | #-Q- cesium #MSUB -n 1 # Reservation du processus |
---|
8 | #-Q- cesium #MSUB -T 86400 # Limite de temps elapsed du job |
---|
9 | #-Q- cesium #MSUB -E "-j o" |
---|
10 | #-Q- cesium #MSUB -E "-S /bin/ksh" |
---|
11 | #-Q- curie ###################### |
---|
12 | #-Q- curie ## CURIE TGCC/CEA ## |
---|
13 | #-Q- curie ###################### |
---|
14 | #-Q- curie #MSUB -r TS # Nom du job |
---|
15 | #-Q- curie #MSUB -eo |
---|
16 | #-Q- curie #MSUB -n 1 # Reservation du processus |
---|
17 | #-Q- curie #MSUB -T 86400 # Limite de temps elapsed du job |
---|
18 | #-Q- curie #MSUB -E '--no-requeue' |
---|
19 | #-Q- curie #MSUB -q large |
---|
20 | #-Q- curie #MSUB -Q normal |
---|
21 | #-Q- curie set +x |
---|
22 | #-Q- platine #!/usr/bin/ksh |
---|
23 | #-Q- platine ################### |
---|
24 | #-Q- platine ## PLATINE CEA ## |
---|
25 | #-Q- platine ################### |
---|
26 | #-Q- platine #BSUB -J TS # Nom du job |
---|
27 | #-Q- platine #BSUB -N # message a la fin du job |
---|
28 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
---|
29 | #-Q- platine #BSUB -W 1:00 # Limite temps |
---|
30 | #-Q- platine #BSUB -q post # Passage en queue post |
---|
31 | #-Q- platine #BSUB -L /bin/ksh |
---|
32 | #-Q- sx8brodie #!/bin/ksh |
---|
33 | #-Q- sx8brodie ####################### |
---|
34 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
---|
35 | #-Q- sx8brodie ####################### |
---|
36 | #-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss |
---|
37 | #-Q- sx8brodie # @ wall_clock_limit = 20:00:00 |
---|
38 | #-Q- sx8brodie # Nom du travail LoadLeveler |
---|
39 | #-Q- sx8brodie # @ job_name = TS |
---|
40 | #-Q- sx8brodie # Fichier de sortie standard du travail |
---|
41 | #-Q- sx8brodie # @ output = $(job_name).$(jobid) |
---|
42 | #-Q- sx8brodie # Fichier de sortie d'erreur du travail |
---|
43 | #-Q- sx8brodie # @ error = $(job_name).$(jobid) |
---|
44 | #-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
45 | #-Q- sx8brodie # @ notification = error |
---|
46 | #-Q- sx8brodie # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
---|
47 | #-Q- sx8brodie # @ queue |
---|
48 | #-Q- aix6 #!/bin/ksh |
---|
49 | #-Q- aix6 ####################### |
---|
50 | #-Q- aix6 ## VARGAS IDRIS ## |
---|
51 | #-Q- aix6 ####################### |
---|
52 | #-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss |
---|
53 | #-Q- aix6 # @ wall_clock_limit = 20:00:00 |
---|
54 | #-Q- aix6 # Nom du travail LoadLeveler |
---|
55 | #-Q- aix6 # @ job_name = TS |
---|
56 | #-Q- aix6 # Fichier de sortie standard du travail |
---|
57 | #-Q- aix6 # @ output = $(job_name).$(jobid) |
---|
58 | #-Q- aix6 # Fichier de sortie d'erreur du travail |
---|
59 | #-Q- aix6 # @ error = $(job_name).$(jobid) |
---|
60 | #-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
61 | #-Q- aix6 # @ notification = error |
---|
62 | #-Q- aix6 # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
---|
63 | #-Q- aix6 # @ queue |
---|
64 | #-Q- ulam #!/bin/ksh |
---|
65 | #-Q- ulam ####################### |
---|
66 | #-Q- ulam ## ULAM IDRIS ## |
---|
67 | #-Q- ulam ####################### |
---|
68 | #-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss |
---|
69 | #-Q- ulam # @ wall_clock_limit = 20:00:00 |
---|
70 | #-Q- ulam # Nom du travail LoadLeveler |
---|
71 | #-Q- ulam # @ job_name = TS |
---|
72 | #-Q- ulam # Fichier de sortie standard du travail |
---|
73 | #-Q- ulam # @ output = $(job_name).$(jobid) |
---|
74 | #-Q- ulam # Fichier de sortie d'erreur du travail |
---|
75 | #-Q- ulam # @ error = $(job_name).$(jobid) |
---|
76 | #-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) |
---|
77 | #-Q- ulam # @ notification = error |
---|
78 | #-Q- ulam # @ environment = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $MASTER ; $RebuildFrequency ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $CompletedFlag ; $TsTask ; $CompToRead ; $FlagToRead ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER |
---|
79 | #-Q- ulam # @ queue |
---|
80 | #-Q- sx8mercure #!/bin/ksh |
---|
81 | #-Q- sx8mercure ###################### |
---|
82 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
---|
83 | #-Q- sx8mercure ###################### |
---|
84 | #-Q- sx8mercure #PBS -N TS # Nom du job |
---|
85 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
---|
86 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
---|
87 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
---|
88 | #-Q- sx8mercure #PBS -l cputim_job=24:00:00 # Limite temps a 2 heures |
---|
89 | #-Q- sx8mercure #PBS -q scalaire |
---|
90 | #-Q- sx8mercure #PBS -r n |
---|
91 | #-Q- sx9mercure #!/bin/ksh |
---|
92 | #-Q- sx9mercure ###################### |
---|
93 | #-Q- sx9mercure ## SX9MERCURE CCRT ## |
---|
94 | #-Q- sx9mercure ###################### |
---|
95 | #-Q- sx9mercure #PBS -N TS # Nom du job |
---|
96 | #-Q- sx9mercure #PBS -j o # regroupement des stdout et stderr |
---|
97 | #-Q- sx9mercure #PBS -S /usr/bin/ksh # shell de soumission |
---|
98 | #-Q- sx9mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
---|
99 | #-Q- sx9mercure #PBS -l elapstim_req=24:00:00 # Limite temps a 2 heures |
---|
100 | #-Q- sx9mercure #PBS -q scalaire |
---|
101 | #-Q- sx9mercure #PBS -r n |
---|
102 | #-Q- titane #!/bin/ksh |
---|
103 | #-Q- titane ###################### |
---|
104 | #-Q- titane ## TITANE CEA ## |
---|
105 | #-Q- titane ###################### |
---|
106 | #-Q- titane #MSUB -r TS # Nom du job |
---|
107 | #-Q- titane #MSUB -eo |
---|
108 | #-Q- titane #MSUB -n 1 # Reservation du processus |
---|
109 | #-Q- titane #MSUB -T 86400 # Limite de temps elapsed du job |
---|
110 | #-Q- titane #MSUB -q mono |
---|
111 | #-Q- titane #MSUB -E '-rn' |
---|
112 | #-Q- lxiv8 ###################### |
---|
113 | #-Q- lxiv8 ## OBELIX LSCE ## |
---|
114 | #-Q- lxiv8 ###################### |
---|
115 | #-Q- lxiv8 #PBS -N TS |
---|
116 | #-Q- lxiv8 #PBS -m a |
---|
117 | #-Q- lxiv8 #PBS -j oe |
---|
118 | #-Q- lxiv8 #PBS -q medium |
---|
119 | #-Q- lxiv8 #PBS -o TS.$$ |
---|
120 | #-Q- lxiv8 #PBS -S /bin/ksh |
---|
121 | #-Q- default #!/bin/ksh |
---|
122 | #-Q- default ################## |
---|
123 | #-Q- default ## DEFAULT HOST ## |
---|
124 | #-Q- default ################## |
---|
125 | |
---|
126 | #************************************************************** |
---|
127 | # Author: Sebastien Denvil |
---|
128 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
---|
129 | # $Revision:: $ Revision of last commit |
---|
130 | # $Author:: $ Author of last commit |
---|
131 | # $Date:: $ Date of last commit |
---|
132 | # IPSL (2006) |
---|
133 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
---|
134 | # |
---|
135 | #************************************************************** |
---|
136 | |
---|
137 | #set -eu |
---|
138 | #set -vx |
---|
139 | |
---|
140 | date |
---|
141 | |
---|
142 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
---|
143 | #-Q- aix6 export OMP_NUM_THREADS=1 |
---|
144 | #-Q- ulam export OMP_NUM_THREADS=1 |
---|
145 | |
---|
146 | #D- Task type (computing or post-processing) |
---|
147 | TaskType=post-processing |
---|
148 | |
---|
149 | ######################################################################## |
---|
150 | |
---|
151 | #D- Flag to determine if this job in a standalone mode |
---|
152 | #D- Default : value from AA_job if any |
---|
153 | StandAlone=${StandAlone:=true} |
---|
154 | |
---|
155 | #D- Path to libIGCM |
---|
156 | #D- Default : value from AA_job if any |
---|
157 | # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) |
---|
158 | # WARNING you must check MirrorlibIGCM variable in sys library. |
---|
159 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
---|
160 | # WARNING of your running libIGCM directory. |
---|
161 | libIGCM=${libIGCM:=::modipsl::/libIGCM} |
---|
162 | |
---|
163 | #D- Flag to determine allready produced time series. Empty if you start from the beginning |
---|
164 | #D- Default : Value from AA_job if any. Usefull in StandAlone case if you want to continue a time series |
---|
165 | CompletedFlag=${CompletedFlag:=} |
---|
166 | |
---|
167 | #D- Flag to determine task type this script will perform. |
---|
168 | #D- Possible Value : 2D, 3D, Chunck2D, Chunck3D |
---|
169 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
---|
170 | TsTask=${TsTask:=2D} |
---|
171 | if [ X${TsTask} = Xempty ] ; then |
---|
172 | TsTask="" |
---|
173 | fi |
---|
174 | |
---|
175 | #D- Flag to determine if rebuild process has been performed asynchronously |
---|
176 | #D- Possible value true or false. |
---|
177 | #D- If true raw files has allready been patched by rebuild job |
---|
178 | #D- If false create_ts will patch the raw files |
---|
179 | #D- Default : Value from AA_job if any. Usefull in StandAlone case. |
---|
180 | RebuildFrequency=${RebuildFrequency:=true} |
---|
181 | |
---|
182 | #D- Flag to determine job's output directory |
---|
183 | #D- Default : value from libIGCM_post.ksh if any |
---|
184 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} |
---|
185 | |
---|
186 | #D- Increased verbosity (1, 2, 3) |
---|
187 | #D- Default : value from AA_job if any |
---|
188 | Verbosity=${Verbosity:=3} |
---|
189 | |
---|
190 | #D- Low level debug : to bypass lib test checks and stack construction |
---|
191 | #D- Default : value from AA_job if any |
---|
192 | DEBUG_debug=${DEBUG_debug:=false} |
---|
193 | |
---|
194 | #D- TEMPORARY Flag to determine atmospheric resolution |
---|
195 | #D- Default : value from atmospheric driver if any |
---|
196 | RESOL_ATM=ALL |
---|
197 | |
---|
198 | #D- Flag to determine surface resolution |
---|
199 | #D- Default : value from surface driver if any |
---|
200 | RESOL_SRF=ALL |
---|
201 | |
---|
202 | #D- Flag to determine surface resolution |
---|
203 | #D- Default : value from surface driver if any |
---|
204 | RESOL_SBG=ALL |
---|
205 | |
---|
206 | #D- TEMPORARY Flag to determine ocean resolution |
---|
207 | #D- Default : value from ocean driver if any |
---|
208 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
---|
209 | |
---|
210 | #D- TEMPORARY Flag to determine ice resolution |
---|
211 | #D- Default : value from ice driver if any |
---|
212 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
---|
213 | |
---|
214 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
---|
215 | #D- Default : value from ice driver if any |
---|
216 | RESOL_MBG=${RESOL_MBG:=ORCA2} |
---|
217 | |
---|
218 | ######################################################################## |
---|
219 | |
---|
220 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
221 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
---|
222 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
223 | ( ${DEBUG_debug} ) && IGCM_card_Check |
---|
224 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
225 | ( ${DEBUG_debug} ) && IGCM_date_Check |
---|
226 | #------- |
---|
227 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
228 | |
---|
229 | ######################################################################## |
---|
230 | |
---|
231 | #set -vx |
---|
232 | |
---|
233 | # Useful cleaning function |
---|
234 | MENAGE () |
---|
235 | { |
---|
236 | [ -f $3 ] && ( IGCM_sys_RshArchive rm -f $1/$2 ;) |
---|
237 | } |
---|
238 | |
---|
239 | ######################################################################## |
---|
240 | |
---|
241 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
---|
242 | IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
243 | |
---|
244 | # ------------------------------------------------------------------ |
---|
245 | # Test if all was right before proceeding further |
---|
246 | # ------------------------------------------------------------------ |
---|
247 | IGCM_debug_Verif_Exit_Post |
---|
248 | |
---|
249 | if [ ${StandAlone} = true ] ; then |
---|
250 | CARD_DIR=${SUBMIT_DIR} |
---|
251 | else |
---|
252 | CARD_DIR=${RUN_DIR_PATH} |
---|
253 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
---|
254 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
---|
255 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
---|
256 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
---|
257 | fi |
---|
258 | |
---|
259 | #================================== |
---|
260 | # First of all |
---|
261 | # |
---|
262 | # Read libIGCM compatibility version in config.card |
---|
263 | # Read UserChoices section |
---|
264 | # Read Ensemble section |
---|
265 | # Read Post section |
---|
266 | # Define all netcdf output directories |
---|
267 | #================================== |
---|
268 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
---|
269 | |
---|
270 | #================================== |
---|
271 | # Define default value to keep compatibility with previous card: means before changes due to TGCC |
---|
272 | if [ X${PackDefault} = Xtrue ] ; then |
---|
273 | [ X${config_Post_PackFrequency} = X ] && config_Post_PackFrequency=${config_Post_RebuildFrequency} |
---|
274 | else |
---|
275 | config_Post_PackFrequency=NONE |
---|
276 | fi |
---|
277 | |
---|
278 | #================================== |
---|
279 | # If pack is active then PackFrequency overule the config_UserChoices_PeriodLength |
---|
280 | if ( [ ! X${config_Post_PackFrequency} = X${NULL_STR} ] && [ ! X${config_Post_PackFrequency} = XNONE ] ) ; then |
---|
281 | config_UserChoices_PeriodLength=${config_Post_PackFrequency} |
---|
282 | fi |
---|
283 | |
---|
284 | # |
---|
285 | # Determine component to take care of depending on kind of task create_ts will perform |
---|
286 | # |
---|
287 | [ ${CompToRead} ] && set -A config_ListOfComponents ${CompToRead} || IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
---|
288 | # |
---|
289 | # Determine period for time series. Default : value from AA_job or from launch_TS if any |
---|
290 | # |
---|
291 | [ X${CompletedFlag} = X ] || CompletedFlag=$( IGCM_date_ConvertFormatToGregorian ${CompletedFlag} ) |
---|
292 | |
---|
293 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
---|
294 | # |
---|
295 | PeriodDateEnd=${PeriodDateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
---|
296 | # |
---|
297 | # Determine Dimension of the produced time series : 2D or 3D |
---|
298 | if ( [ X${TsTask} = XChunck2D ] || [ X${TsTask} = X2D ] ) ; then |
---|
299 | Dimension=2D |
---|
300 | elif ( [ X${TsTask} = XChunck3D ] || [ X${TsTask} = X3D ] ) ; then |
---|
301 | Dimension=3D |
---|
302 | else |
---|
303 | Dimension="" |
---|
304 | fi |
---|
305 | |
---|
306 | # ------------------------------------------------------------------ |
---|
307 | #D- Test if all was right before entering the loop |
---|
308 | # ------------------------------------------------------------------ |
---|
309 | IGCM_debug_Verif_Exit_Post |
---|
310 | |
---|
311 | ######################################################################## |
---|
312 | # |
---|
313 | # Depending on requested time series fill following variables : |
---|
314 | # |
---|
315 | # - LISTE_FILE_${comp}[*] |
---|
316 | # - LISTE_VARS_${file}[*] |
---|
317 | # - LISTE_AXIS_${file}[*] |
---|
318 | # - LISTE_PATCH_${file}[*] |
---|
319 | ######################################################################## |
---|
320 | |
---|
321 | # |
---|
322 | # For each selected component determine which files need post-processing |
---|
323 | # |
---|
324 | DoJob=false |
---|
325 | for comp in ${config_ListOfComponents[*]} ; do |
---|
326 | # |
---|
327 | ActiveComp=false |
---|
328 | # |
---|
329 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
---|
330 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
---|
331 | # |
---|
332 | card=${CARD_DIR}/COMP/${compname}.card |
---|
333 | |
---|
334 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
---|
335 | # |
---|
336 | ListFilesName=${compname}_OutputFiles_List |
---|
337 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
---|
338 | # |
---|
339 | if [ X${FileName0} != X${NULL_STR} ] ; then |
---|
340 | # |
---|
341 | #IGCM_debug_Print 1 "Component : ${compname}" |
---|
342 | # |
---|
343 | # INITIALISATION |
---|
344 | # |
---|
345 | typeset i |
---|
346 | if [ ${FlagToRead} ] ; then |
---|
347 | ((NbFiles=${FlagToRead})) |
---|
348 | ((i=${NbFiles})) |
---|
349 | else |
---|
350 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
---|
351 | i=2 |
---|
352 | fi |
---|
353 | # |
---|
354 | until [ $i -gt $NbFiles ]; do |
---|
355 | # |
---|
356 | eval flag_post=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
---|
357 | # |
---|
358 | if [ X${flag_post} != XNONE ] ; then |
---|
359 | # |
---|
360 | # For each comp and each file who needs post-processing |
---|
361 | # determine which variables need time series. |
---|
362 | # |
---|
363 | FILE=$( echo ${flag_post} | awk "-FPost_" '{print $2}' ) |
---|
364 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} TimeSeriesVars${Dimension} |
---|
365 | IGCM_card_DefineVariableFromOption ${card} Post_${FILE} ChunckJob${Dimension} |
---|
366 | # |
---|
367 | # If TimeSeriesVars list is empty we skip |
---|
368 | # |
---|
369 | if [ $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}} ) = ${NULL_STR} ] ; then |
---|
370 | # |
---|
371 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
372 | IGCM_debug_Print 3 "TimeSeriesVars${Dimension} for ${FILE} is empty" |
---|
373 | (( i=i+3 )) |
---|
374 | continue |
---|
375 | # |
---|
376 | fi |
---|
377 | # |
---|
378 | # If files/variables has been switch off by ChunckJob${Dimension}=0 we skip |
---|
379 | # |
---|
380 | if [ X$( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = XOFF ] ; then |
---|
381 | IGCM_debug_Print 3 "Nothing to do for ${FILE} according to ${card}" |
---|
382 | IGCM_debug_Print 3 "ChunckJob${Dimension}=OFF for ${FILE} so it has been switched off" |
---|
383 | (( i=i+3 )) |
---|
384 | continue |
---|
385 | fi |
---|
386 | # |
---|
387 | # If we are not a Chunck type task, we skip files/variables handled by chunck task |
---|
388 | # |
---|
389 | if ( [ ! X${TsTask} = XChunck${Dimension} ] && [ ! X${TsTask} = X ] && [ ! XChunck${Dimension} = XChunck ] ) ; then |
---|
390 | if [ ! $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} ) = NONE ] ; then |
---|
391 | IGCM_debug_Print 3 "Nothing to do for ${FILE} TimeSeriesVars${Dimension} according to ${card}" |
---|
392 | IGCM_debug_Print 3 "Let another chunck task do the job $( eval echo \${${compname}_Post_${FILE}_ChunckJob${Dimension}} )" |
---|
393 | (( i=i+3 )) |
---|
394 | continue |
---|
395 | fi |
---|
396 | fi |
---|
397 | # |
---|
398 | # Now on we know we have things to do |
---|
399 | # |
---|
400 | |
---|
401 | # |
---|
402 | # We need coordinates axis to properly fill produced time series |
---|
403 | # |
---|
404 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} GatherWithInternal |
---|
405 | # |
---|
406 | if [ $( eval echo \${${compname}_Post_${FILE}_GatherWithInternal} ) = ${NULL_STR} ] ; then |
---|
407 | # |
---|
408 | IGCM_debug_Print 1 "ERROR !! We miss coordinate axis for ${FILE} according to ${card}" |
---|
409 | IGCM_debug_Print 1 "So no time series will be produced for ${FILE} !!" |
---|
410 | (( i=i+3 )) |
---|
411 | continue |
---|
412 | # |
---|
413 | fi |
---|
414 | # |
---|
415 | # We need LIST of variables not allready produced (useful for standalone mode) |
---|
416 | # |
---|
417 | FlagDir=$( echo ${FILE} | awk -F "_" '{print $1}' ) |
---|
418 | case ${FlagDir} in |
---|
419 | *Y) TS_Dir=TS_YE ;; |
---|
420 | *M) TS_Dir=TS_MO ;; |
---|
421 | *D) TS_Dir=TS_DA ;; |
---|
422 | HF) TS_Dir=TS_HF ;; |
---|
423 | 3H) TS_Dir=TS_HF ;; |
---|
424 | INS) TS_Dir=TS_INS ;; |
---|
425 | esac |
---|
426 | # |
---|
427 | count=0 |
---|
428 | for var in $( eval echo \${${compname}_Post_${FILE}_TimeSeriesVars${Dimension}[*]} ) ; do |
---|
429 | # |
---|
430 | DIRECTORY=${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
431 | TestedFile=${config_UserChoices_JobName}_${DateBegin}_${PeriodDateEnd}_${FlagDir}_${var}.nc |
---|
432 | # |
---|
433 | IGCM_sys_TestFileArchive ${DIRECTORY}/${TestedFile} |
---|
434 | if [ ! $? = 0 ] ; then |
---|
435 | eval set +A LISTE_VARS_${FILE} \${LISTE_VARS_${FILE}[*]} ${var} |
---|
436 | ActiveComp=true |
---|
437 | (( count = count + 1 )) |
---|
438 | fi |
---|
439 | done |
---|
440 | # |
---|
441 | if [ ${count} -gt 0 ] ; then |
---|
442 | # |
---|
443 | eval set +A LISTE_FILE_${comp} \${LISTE_FILE_${comp}[*]} ${FILE} |
---|
444 | eval set +A LISTE_AXIS_${FILE} \${${compname}_Post_${FILE}_GatherWithInternal[*]} |
---|
445 | # |
---|
446 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
447 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
---|
448 | eval set +A LISTE_PATCHES_${FILE} \${${compname}_Post_${FILE}_Patches[*]} |
---|
449 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
---|
450 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
---|
451 | if [ Xload${Patch} != X ] ; then |
---|
452 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
---|
453 | eval load${Patch}=loaded |
---|
454 | fi |
---|
455 | done |
---|
456 | fi |
---|
457 | fi |
---|
458 | fi |
---|
459 | fi |
---|
460 | (( i=i+3 )) |
---|
461 | done |
---|
462 | fi |
---|
463 | # |
---|
464 | if [ ${ActiveComp} = true ] ; then |
---|
465 | set +A ActiveListOfComponents ${ActiveListOfComponents[*]} ${comp} |
---|
466 | fi |
---|
467 | done |
---|
468 | |
---|
469 | set -A config_ListOfComponents ${ActiveListOfComponents[*]} |
---|
470 | [ ! -z "${ActiveListOfComponents}" ] && DoJob=true |
---|
471 | |
---|
472 | ######################################################################## |
---|
473 | # |
---|
474 | # IS THERE SOME ALLREADY PRODUCED TIME SERIES ? |
---|
475 | # IF SO BRING THEM IN THE WORKING DIRECTORY |
---|
476 | # |
---|
477 | # PS : Keep in mind that IGCM_sys_Get here is a weak link : |
---|
478 | # - especially for IDRiS |
---|
479 | # - no special protection against "command too long" ! |
---|
480 | # - libIGCM_sys should handle that or modify following code part |
---|
481 | # |
---|
482 | ######################################################################## |
---|
483 | |
---|
484 | if [ ${StandAlone} != true ] ; then |
---|
485 | Running_Flag=$( IGCM_sys_RshMaster "IGCM_card_DefineVariableFromOption \ |
---|
486 | ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning ; \ |
---|
487 | echo \${run_PostProcessing_TimeSeriesRunning}" ) |
---|
488 | |
---|
489 | #if [ X${Running_Flag} = Xy ] ; then |
---|
490 | # # Time Series Job allready running |
---|
491 | # IGCM_debug_Print 1 "Time Series Job allready running exit" |
---|
492 | # exit |
---|
493 | #fi |
---|
494 | # Now run.card know we are running |
---|
495 | |
---|
496 | |
---|
497 | |
---|
498 | |
---|
499 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "y" |
---|
500 | |
---|
501 | |
---|
502 | |
---|
503 | |
---|
504 | |
---|
505 | # Get information from last execution |
---|
506 | #CompletedFlag=$( IGCM_sys_RshMaster \ |
---|
507 | # "IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted ;\ |
---|
508 | # echo \${run_PostProcessing_TimeSeriesCompleted}" ) |
---|
509 | fi |
---|
510 | |
---|
511 | # Is it the first submission or not ? |
---|
512 | |
---|
513 | if ( [ X${CompletedFlag} = X ] || [ X${CompletedFlag} = X$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) ] ) ; then |
---|
514 | # First Time Series Submission |
---|
515 | FIRST_PASS=TRUE |
---|
516 | Length=$( IGCM_date_DaysInPreviousPeriod ${DateBegin} ${config_UserChoices_PeriodLength} begin) |
---|
517 | DATE_FIN_JOB_B=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( Length - 1 )) ) |
---|
518 | else |
---|
519 | # Last Completed Time Series |
---|
520 | FIRST_PASS=FALSE |
---|
521 | DATE_FIN_JOB_B=${CompletedFlag} |
---|
522 | date=${DateBegin}_${DATE_FIN_JOB_B} |
---|
523 | for comp in ${config_ListOfComponents[*]} ; do |
---|
524 | # |
---|
525 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
526 | # |
---|
527 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
528 | # |
---|
529 | #set -A liste_file |
---|
530 | unset liste_file |
---|
531 | # |
---|
532 | file_path=${R_SAVE}/${comp}/Analyse |
---|
533 | # |
---|
534 | i=0 |
---|
535 | file=${NULL_STR} |
---|
536 | # |
---|
537 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
538 | # |
---|
539 | # Determine in which output can we find file |
---|
540 | # IE : Analyse/TS or Analyse/DA2TS or ... |
---|
541 | # |
---|
542 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
543 | case ${FlagDir} in |
---|
544 | *Y) TS_Dir=TS_YE ;; |
---|
545 | *M) TS_Dir=TS_MO ;; |
---|
546 | *D) TS_Dir=TS_DA ;; |
---|
547 | HF) TS_Dir=TS_HF ;; |
---|
548 | 3H) TS_Dir=TS_HF ;; |
---|
549 | INS) TS_Dir=TS_INS ;; |
---|
550 | esac |
---|
551 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
552 | # |
---|
553 | #set +A liste_file ${liste_file[*]} ${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
554 | liste_file[${#liste_file[*]}]=${file_path}/${TS_Dir}/${config_UserChoices_JobName}_${date}_${FlagDir}_${var}.nc |
---|
555 | # |
---|
556 | done |
---|
557 | done |
---|
558 | if [ X${file} != X${NULL_STR} ] ; then |
---|
559 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
560 | # Even if some files are missing we tried to continue |
---|
561 | # Either ListVar in compname.card are asked but not present in original history file |
---|
562 | # Either a previous TS task failed |
---|
563 | ExitFlag=false |
---|
564 | IGCM_debug_Verif_Exit_Post |
---|
565 | fi |
---|
566 | done |
---|
567 | # |
---|
568 | LEVEL=0 |
---|
569 | # |
---|
570 | fi |
---|
571 | |
---|
572 | ######################################################################## |
---|
573 | # |
---|
574 | # DEFINE LOOP PARAMETERS |
---|
575 | # |
---|
576 | ######################################################################## |
---|
577 | |
---|
578 | DATE_COUNT=${DATE_FIN_JOB_B} |
---|
579 | DATE_FIN_JOB_B_LOOP=${DATE_FIN_JOB_B} |
---|
580 | |
---|
581 | ( [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] ) && NBRE_FILE_TOT=0 || NBRE_FILE_TOT=1 |
---|
582 | |
---|
583 | if [ ${DoJob} = true ] ; then |
---|
584 | while [ ${DATE_COUNT} -lt ${PeriodDateEnd} ] ; do |
---|
585 | (( NBRE_FILE_TOT = NBRE_FILE_TOT + 1 )) |
---|
586 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_COUNT} ${config_UserChoices_PeriodLength} ) |
---|
587 | DATE_COUNT=$( IGCM_date_AddDaysToGregorianDate ${DATE_COUNT} ${Length} ) |
---|
588 | done |
---|
589 | else |
---|
590 | NBRE_FILE_TOT=0 |
---|
591 | fi |
---|
592 | |
---|
593 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
594 | NBRE_TOUR=1 |
---|
595 | elif [ ${NBRE_FILE_TOT}%${UNIX_MAX_LIMIT} -eq 0 ] ; then |
---|
596 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT} |
---|
597 | else |
---|
598 | let NBRE_TOUR=${NBRE_FILE_TOT}/${UNIX_MAX_LIMIT}+1 |
---|
599 | fi |
---|
600 | |
---|
601 | CURRENT_LOOP=1 |
---|
602 | # THIS LOOP GIVES PARAMETERS FOR THE DATE'S LOOP ie : DATE_COURANTE, DATE_FIN. |
---|
603 | # WE HAVE 3 LEVELS |
---|
604 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
605 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
606 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
607 | |
---|
608 | while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] ; do |
---|
609 | |
---|
610 | if [ ${NBRE_FILE_TOT} -le ${UNIX_MAX_LIMIT} ] ; then |
---|
611 | # - LEVEL 1 : JUST ONE LOOP TO COMPLETE |
---|
612 | NBRE_FILE_LOOP=${NBRE_FILE_TOT} |
---|
613 | |
---|
614 | if [ ${FIRST_PASS} = TRUE ] ; then |
---|
615 | DATE_COURANTE=${DATE_FIN_JOB_B_LOOP} |
---|
616 | else |
---|
617 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
618 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
619 | fi |
---|
620 | |
---|
621 | DATE_FIN=${PeriodDateEnd} |
---|
622 | DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} |
---|
623 | |
---|
624 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
625 | [ -n "${LEVEL}" ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
626 | |
---|
627 | LEVEL=1 |
---|
628 | DEPOT="TRUE" |
---|
629 | elif [ ${CURRENT_LOOP} -ne ${NBRE_TOUR} ] ; then |
---|
630 | # - LEVEL 2 : WE ARE IN THE "DEEP" LOOP |
---|
631 | NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
632 | |
---|
633 | if [ ! ${FIRST_PASS} = TRUE ] && [ ${CURRENT_LOOP} -eq 1 ] ; then |
---|
634 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN_JOB_B_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
635 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN_JOB_B_LOOP} ${Length} ) |
---|
636 | elif [ -z "${DATE_COURANTE}" ] ; then |
---|
637 | DATE_COURANTE=${DATE_FIN_JOB_B} |
---|
638 | else |
---|
639 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
640 | DATE_COURANTE=$( IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
641 | fi |
---|
642 | |
---|
643 | (( TotLength = 0 )) |
---|
644 | COMPTEUR=1 |
---|
645 | DATE_LOOP=${DATE_COURANTE} |
---|
646 | |
---|
647 | while [ ${COMPTEUR} -lt ${NBRE_FILE_LOOP} ] ; do |
---|
648 | # |
---|
649 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
650 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length} ) |
---|
651 | (( TotLength = TotLength + Length )) |
---|
652 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
653 | # |
---|
654 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
655 | DATE_FIN=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} ${TotLength} ) |
---|
656 | |
---|
657 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
658 | [ -n "${LEVEL}" ] && [ ${LEVEL} -eq 0 ] && FLAG_B="TRUE" || [ ${CURRENT_LOOP} -gt 1 ] && FLAG_B="TRUE" || FLAG_B="FALSE" |
---|
659 | DEPOT="FALSE" |
---|
660 | LEVEL=2 |
---|
661 | else |
---|
662 | # - LEVEL 3 : WE ARE IN THE LAST LOOP |
---|
663 | NBRE_FILE_LOOP=$(( ${NBRE_FILE_TOT} % ( ${UNIX_MAX_LIMIT} * ( ${CURRENT_LOOP} - 1 ) ) )) |
---|
664 | [ ${NBRE_FILE_LOOP} -eq 0 ] && NBRE_FILE_LOOP=${UNIX_MAX_LIMIT} |
---|
665 | |
---|
666 | Length=$( IGCM_date_DaysInNextPeriod ${DATE_FIN} ${config_UserChoices_PeriodLength} ) |
---|
667 | DATE_COURANTE=$(IGCM_date_AddDaysToGregorianDate ${DATE_FIN} ${Length} ) |
---|
668 | DATE_FIN=${PeriodDateEnd} |
---|
669 | [ -n "${DATE_LOOP}" ] && DATE_FIN_JOB_B_LOOP_PREC=${DATE_FIN_JOB_B_LOOP} ; DATE_FIN_JOB_B_LOOP=${DATE_LOOP} |
---|
670 | |
---|
671 | LEVEL=3 |
---|
672 | DEPOT="TRUE" |
---|
673 | FLAG_B="TRUE" |
---|
674 | fi |
---|
675 | |
---|
676 | # THEN FOR EACH FILE TYPE WE LOOP BETWEEN DATE_COURANTE AND DATE_FIN. |
---|
677 | for comp in ${config_ListOfComponents[*]} ; do |
---|
678 | # |
---|
679 | IGCM_sys_Mkdir ${RUN_DIR_PATH}/${comp} |
---|
680 | # |
---|
681 | IGCM_sys_Cd ${RUN_DIR_PATH}/${comp} |
---|
682 | # |
---|
683 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
---|
684 | # |
---|
685 | i=0 |
---|
686 | # |
---|
687 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
---|
688 | # |
---|
689 | # Determine in which output can we find file |
---|
690 | # IE : Output/MO or Output/DA or ... |
---|
691 | # |
---|
692 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
---|
693 | case ${FlagDir} in |
---|
694 | *Y) TS_Dir=TS_YE ; FreqDir=YE ;; |
---|
695 | *M) TS_Dir=TS_MO ; FreqDir=MO ;; |
---|
696 | *D) TS_Dir=TS_DA ; FreqDir=DA ;; |
---|
697 | HF) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
698 | 3H) TS_Dir=TS_HF ; FreqDir=HF ;; |
---|
699 | INS) TS_Dir=TS_INS ; FreqDir=INS ;; |
---|
700 | *) |
---|
701 | IGCM_debug_Print 1 "Error in FlagDir=${FlagDir} for file ${file}." |
---|
702 | IGCM_sys_Exit "Job create_ts" ;; |
---|
703 | esac |
---|
704 | |
---|
705 | # Initialize array |
---|
706 | #set -A liste_file |
---|
707 | #set -A liste_file_tmp |
---|
708 | unset liste_file |
---|
709 | unset liste_file_tmp |
---|
710 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
---|
711 | |
---|
712 | COMPTEUR=1 |
---|
713 | DATE_LOOP=${DATE_COURANTE} |
---|
714 | |
---|
715 | while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] ; do |
---|
716 | # |
---|
717 | Length1=$( IGCM_date_DaysInPreviousPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} end) |
---|
718 | DATE_TAB=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} $(( 1 - Length1 )) )_${DATE_LOOP} |
---|
719 | |
---|
720 | Length2=$( IGCM_date_DaysInNextPeriod ${DATE_LOOP} ${config_UserChoices_PeriodLength} ) |
---|
721 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} ${Length2} ) |
---|
722 | |
---|
723 | #set +A liste_file ${liste_file[*]} ${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
724 | #set +A liste_file_tmp ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
725 | liste_file[${#liste_file[*]}]=${file_path}${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
726 | liste_file_tmp[${#liste_file_tmp[*]}]=${config_UserChoices_JobName}_${DATE_TAB}_${file}.nc |
---|
727 | (( COMPTEUR = COMPTEUR + 1 )) |
---|
728 | # |
---|
729 | done # while [ ${COMPTEUR} -le ${NBRE_FILE_LOOP} ] done |
---|
730 | DATE_LOOP=$( IGCM_date_AddDaysToGregorianDate ${DATE_LOOP} -${Length2} ) |
---|
731 | |
---|
732 | # Get selected files |
---|
733 | IGCM_sys_Get /l liste_file[*] ${RUN_DIR_PATH}/${comp} |
---|
734 | IGCM_debug_Verif_Exit_Post |
---|
735 | |
---|
736 | # Apply IGCM_Patch if needed |
---|
737 | if [ ! X${RebuildFrequency} = Xtrue ] ; then |
---|
738 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
---|
739 | for file_t in $( eval echo ${liste_file_tmp[*]} ); do |
---|
740 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
---|
741 | IGCM_${Patch} ${file_t} |
---|
742 | IGCM_debug_Verif_Exit_Post |
---|
743 | done |
---|
744 | done |
---|
745 | fi |
---|
746 | fi |
---|
747 | |
---|
748 | # WE CAN CONCATENATE FILES AT THIS POINT |
---|
749 | [ "${FLAG_B}" = "TRUE" ] && DATE_BUILD_B=${DateBegin}_${DATE_FIN_JOB_B_LOOP_PREC} |
---|
750 | Length=$( IGCM_date_DaysInPreviousPeriod ${DATE_COURANTE} ${config_UserChoices_PeriodLength} end) |
---|
751 | DATE_BUILD1=$( IGCM_date_AddDaysToGregorianDate ${DATE_COURANTE} -$(( Length - 1 )) ) |
---|
752 | DATE_BUILD=${DATE_BUILD1}_${DATE_FIN} |
---|
753 | DATE_BUILD_END=${DateBegin}_${DATE_FIN} |
---|
754 | |
---|
755 | liste_coord=" " |
---|
756 | for axis in $( eval echo \${LISTE_AXIS_${file}[*]} ); do |
---|
757 | liste_coord=${liste_coord}${axis}"," |
---|
758 | done |
---|
759 | |
---|
760 | # Time axis must be the last dimension |
---|
761 | time_axis=${axis} |
---|
762 | |
---|
763 | # SWITCH BETWEEN MODEL TO FIT PARTICULAR CASE |
---|
764 | for var in $( eval echo \${LISTE_VARS_${file}[*]} ) ; do |
---|
765 | # |
---|
766 | if [ "${FLAG_B}" = "TRUE" ] ; then |
---|
767 | # WE CONCATENATE WITH EXISTING FILES |
---|
768 | file1=${config_UserChoices_JobName}_${DATE_BUILD_B}_${FlagDir}_${var}.nc |
---|
769 | file_out=${config_UserChoices_JobName}_${DATE_BUILD_END}_${FlagDir}_${var}.nc |
---|
770 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${file1} ${liste_file_tmp[*]} ${file_out} |
---|
771 | # |
---|
772 | IGCM_sys_Rm ${file1} |
---|
773 | if [ ! "${DEPOT}" = "TRUE" ] ; then |
---|
774 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
775 | # "${file1} = file_before ? |
---|
776 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
777 | fi |
---|
778 | |
---|
779 | ExitFlag=false |
---|
780 | else |
---|
781 | # OR NOT |
---|
782 | IGCM_sys_ncrcat --hst -v ${liste_coord}${var} ${liste_file_tmp[*]} ${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
783 | fi |
---|
784 | |
---|
785 | # |
---|
786 | if [ "${DEPOT}" = "TRUE" ] ; then |
---|
787 | # WE PUT FINAL FILE ON FILE SYSTEM |
---|
788 | [ "${FLAG_B}" = "FALSE" ] && file_out=${config_UserChoices_JobName}_${DATE_BUILD}_${FlagDir}_${var}.nc |
---|
789 | file_before=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc |
---|
790 | # |
---|
791 | eval IGCM_sys_Put_Out ${file_out} \${R_OUT_${comp}}/Analyse/${TS_Dir}/${file_out} |
---|
792 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file_before} ${file_out} |
---|
793 | if [ ! "X${file1}" = "X" ] ; then |
---|
794 | [ ! "${file1}" = "${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_${FlagDir}_${var}.nc" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/${TS_Dir} ${file1} ${file_out} |
---|
795 | fi |
---|
796 | # |
---|
797 | if ( [ ${FlagDir} = "1M" ] && [ -f ${file_out} ] ) ; then |
---|
798 | file_before_YE=${config_UserChoices_JobName}_${DateBegin}_${DATE_FIN_JOB_B}_1Y_${var}.nc |
---|
799 | file_out_YE=${config_UserChoices_JobName}_${DATE_BUILD_END}_1Y_${var}.nc |
---|
800 | # |
---|
801 | # Compute yearly average considering calendar |
---|
802 | # and set date of the mid year to 01/07 at 00:00 |
---|
803 | IGCM_sys_cdo -settime,00:00 -setday,1 -setmon,7 -settunits,days -divdpy -yearsum -muldpm -selvar,${var} ${file_out} ${file_out_YE} |
---|
804 | # Extract all ancillary variables except $var, they will be appended after the cdo command |
---|
805 | # Needed because cdo applies calculs on all variables |
---|
806 | IGCM_sys_ncks -Oh -x -v ${var} ${file_out} ${file_out_YE%%.nc}_tmp1.nc |
---|
807 | # This will remove the time axis because cdo rewrites severely with only considered useful variables |
---|
808 | IGCM_sys_cdo -mulc,1 ${file_out_YE%%.nc}_tmp1.nc ${file_out_YE%%.nc}_tmp2.nc 2>/dev/null |
---|
809 | if [ $? -eq 0 ] ; then |
---|
810 | # Now append all ancillary variables if previous cdo operator ok |
---|
811 | IGCM_sys_ncks -h -A ${file_out_YE%%.nc}_tmp2.nc ${file_out_YE} |
---|
812 | fi |
---|
813 | |
---|
814 | # Put global history attribut |
---|
815 | IGCM_sys_ncatted -Oh -a history,global,o,c,"build by libIGCM/create_ts" ${file_out_YE} |
---|
816 | # |
---|
817 | eval IGCM_sys_Put_Out ${file_out_YE} \${R_OUT_${comp}}/Analyse/TS_MO_YE/${file_out_YE} |
---|
818 | [ "${FLAG_B}" = "TRUE" ] && eval MENAGE \${R_OUT_${comp}}/Analyse/TS_MO_YE/ ${file_before_YE} ${file_out_YE} |
---|
819 | IGCM_sys_Rm ${file_out_YE%%.nc}_tmp*.nc |
---|
820 | fi |
---|
821 | # |
---|
822 | IGCM_sys_Rm ${file_out} |
---|
823 | ExitFlag=false |
---|
824 | # |
---|
825 | fi |
---|
826 | # |
---|
827 | done # for var in ${liste_var} ; do |
---|
828 | IGCM_sys_Rm ${liste_file_tmp[*]} |
---|
829 | done # for file in ${liste_file_brut} do |
---|
830 | done # for comp in ${config_ListOfComponents[*]} ; do |
---|
831 | # GO AHEAD IN DEEPEST LOOP |
---|
832 | (( CURRENT_LOOP = CURRENT_LOOP + 1 )) |
---|
833 | done # while [ ${CURRENT_LOOP} -le ${NBRE_TOUR} ] do |
---|
834 | # FINISH |
---|
835 | |
---|
836 | # DODS copy |
---|
837 | for comp in ${config_ListOfComponents[*]} ; do |
---|
838 | for TS_Dir in TS_YE TS_MO TS_MO_YE TS_DA TS_HF TS_INS ; do |
---|
839 | IGCM_sys_TestDirArchive ${R_SAVE}/${comp}/Analyse/${TS_Dir} |
---|
840 | [ $? = 0 ] && IGCM_sys_Put_Dods ${comp}/Analyse/${TS_Dir} |
---|
841 | done |
---|
842 | done |
---|
843 | |
---|
844 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
---|
845 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG |
---|
846 | |
---|
847 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG" |
---|
848 | export listVarEnv |
---|
849 | |
---|
850 | #D- |
---|
851 | # -------------------------------------------------------------------- |
---|
852 | #D- Test if all was right |
---|
853 | # -------------------------------------------------------------------- |
---|
854 | IGCM_debug_Verif_Exit_Post |
---|
855 | # -------------------------------------------------------------------- |
---|
856 | #D- Submit MONITORING |
---|
857 | # -------------------------------------------------------------------- |
---|
858 | if ( [ X${TsTask} = X2D ] || [ X${TsTask} = X3D ] || [ X${TsTask} = X ] ) ; then |
---|
859 | Script_Post_Output=monitoring.${PeriodDateEnd} |
---|
860 | IGCM_sys_QsubPost monitoring |
---|
861 | fi |
---|
862 | |
---|
863 | #D- |
---|
864 | # -------------------------------------------------------------------- |
---|
865 | #D- Update the run.card |
---|
866 | # -------------------------------------------------------------------- |
---|
867 | if [ ${StandAlone} != true ] ; then |
---|
868 | # Put in run.card end period of time series |
---|
869 | [ X"${DATE_FIN}" = X ] || IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesCompleted "${DATE_FIN}" |
---|
870 | # We have finish the job ! |
---|
871 | IGCM_sys_RshMaster IGCM_card_WriteOption ${SUBMIT_DIR}/run.card PostProcessing TimeSeriesRunning "n" |
---|
872 | fi |
---|
873 | |
---|
874 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
---|
875 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|
876 | |
---|
877 | date |
---|