| 1 | #-Q- curie #!/bin/ksh |
|---|
| 2 | #-Q- curie ###################### |
|---|
| 3 | #-Q- curie ## CURIE TGCC/CEA ## |
|---|
| 4 | #-Q- curie ###################### |
|---|
| 5 | #-Q- curie #MSUB -r ::Jobname:: # Job Name |
|---|
| 6 | #-Q- curie #MSUB -o Script_Output_::Jobname::.000001 # standard output |
|---|
| 7 | #-Q- curie #MSUB -e Script_Output_::Jobname::.000001 # error output |
|---|
| 8 | #-Q- curie #MSUB -eo |
|---|
| 9 | #-Q- curie #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case) |
|---|
| 10 | #-Q- curie #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD |
|---|
| 11 | #-Q- curie #MSUB -x # exclusive node. To specify only for MPMD together with the one below |
|---|
| 12 | #-Q- curie #MSUB -E '--cpu_bind=none' |
|---|
| 13 | #-Q- curie ##MSUB -E '--distribution cyclic' |
|---|
| 14 | #-Q- curie #MSUB -T 86400 # Wall clock limit (seconds) |
|---|
| 15 | #-Q- curie #MSUB -q standard # thin nodes |
|---|
| 16 | #-Q- curie ##MSUB -U high |
|---|
| 17 | #-Q- curie #MSUB -U medium |
|---|
| 18 | #-Q- curie ##MSUB -U low |
|---|
| 19 | #-Q- curie #MSUB -A ::default_project:: |
|---|
| 20 | #-Q- curie # Below specific options that can be activated |
|---|
| 21 | #-Q- curie ##MSUB -q ivybridge # Option for Airain |
|---|
| 22 | #-Q- curie |
|---|
| 23 | #-Q- curie BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC |
|---|
| 24 | #-Q- curie set +x |
|---|
| 25 | #-Q- irene #!/bin/ksh |
|---|
| 26 | #-Q- irene ###################### |
|---|
| 27 | #-Q- irene ## IRENE TGCC/CEA ## |
|---|
| 28 | #-Q- irene ###################### |
|---|
| 29 | #-Q- irene #MSUB -r ::Jobname:: # Job Name |
|---|
| 30 | #-Q- irene #MSUB -o Script_Output_::Jobname::.000001 # standard output |
|---|
| 31 | #-Q- irene #MSUB -e Script_Output_::Jobname::.000001 # error output |
|---|
| 32 | #-Q- irene #MSUB -eo |
|---|
| 33 | #-Q- irene #MSUB -n ::JobNumProcTot:: # Number of MPI tasks (SPMD case) or cores (MPMD case) |
|---|
| 34 | #-Q- irene #MSUB -c ::openMPthreads:: # Number of openMP threads. To specify only for SMPD |
|---|
| 35 | #-Q- irene #MSUB -x # exclusive node. To specify only for MPMD together with the one below |
|---|
| 36 | #-Q- irene #MSUB -E '--cpu_bind=none' |
|---|
| 37 | #-Q- irene #MSUB -T 86400 # Wall clock limit (seconds) |
|---|
| 38 | #-Q- irene #MSUB -A ::default_project:: |
|---|
| 39 | #-Q- irene #MSUB -q skylake |
|---|
| 40 | #-Q- irene ###MSUB -m store,work,scratch |
|---|
| 41 | #-Q- irene #MSUB -E '--licenses=fs_unshare,fs_work,fs_store,fs_scratch' |
|---|
| 42 | #-Q- irene |
|---|
| 43 | #-Q- irene BATCH_NUM_PROC_TOT=$BRIDGE_MSUB_NPROC |
|---|
| 44 | #-Q- irene set +x |
|---|
| 45 | #-Q- ada #!/bin/ksh |
|---|
| 46 | #-Q- ada # ###################### |
|---|
| 47 | #-Q- ada # ## ADA IDRIS ## |
|---|
| 48 | #-Q- ada # ###################### |
|---|
| 49 | #-Q- ada # Job name |
|---|
| 50 | #-Q- ada # @ job_name = ::Jobname:: |
|---|
| 51 | #-Q- ada # Standard output file name |
|---|
| 52 | #-Q- ada # @ output = Script_Output_::Jobname::.000001 |
|---|
| 53 | #-Q- ada # Error output file name |
|---|
| 54 | #-Q- ada # @ error = Script_Output_::Jobname::.000001 |
|---|
| 55 | #-Q- ada # Job type |
|---|
| 56 | #-Q- ada # @ job_type = parallel |
|---|
| 57 | #-Q- ada # Total number of tasks |
|---|
| 58 | #-Q- ada # @ total_tasks = ::JobNumProcTot:: |
|---|
| 59 | #-Q- ada # Specific option for OpenMP parallelization: Number of OpenMP threads per MPI task |
|---|
| 60 | #-Q- ada # @ parallel_threads = ::openMPthreads:: |
|---|
| 61 | #-Q- ada # Memory : as_limit=3.5gb max per process per core. With 4 threads per process use max as_limit=14gb |
|---|
| 62 | #-Q- ada # @ as_limit = 3.5gb |
|---|
| 63 | #-Q- ada # Maximum CPU time per task hh:mm:ss |
|---|
| 64 | #-Q- ada # @ wall_clock_limit = 1:00:00 |
|---|
| 65 | #-Q- ada # @ environment = "BATCH_NUM_PROC_TOT=::JobNumProcTot::" ; wall_clock_limit=$(wall_clock_limit) |
|---|
| 66 | #-Q- ada # End of the header options |
|---|
| 67 | #-Q- ada # @ queue |
|---|
| 68 | #-Q- lxiv8 ###################### |
|---|
| 69 | #-Q- lxiv8 ## OBELIX LSCE ## |
|---|
| 70 | #-Q- lxiv8 ###################### |
|---|
| 71 | #-Q- lxiv8 #PBS -N ::Jobname:: |
|---|
| 72 | #-Q- lxiv8 #PBS -m a |
|---|
| 73 | #-Q- lxiv8 #PBS -j oe |
|---|
| 74 | #-Q- lxiv8 #PBS -q mediump |
|---|
| 75 | #-Q- lxiv8 #PBS -o Script_Output_::Jobname::.000001 |
|---|
| 76 | #-Q- lxiv8 #PBS -S /bin/ksh |
|---|
| 77 | #-Q- lxiv8 #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
|---|
| 78 | #-Q- lxiv8 #PBS -l nodes=1:ppn=::JobNumProcTot:: |
|---|
| 79 | #-Q- ifort_CICLAD ###################### |
|---|
| 80 | #-Q- ifort_CICLAD ## CICLAD IPSL ## |
|---|
| 81 | #-Q- ifort_CICLAD ###################### |
|---|
| 82 | #-Q- ifort_CICLAD #PBS -N ::Jobname:: |
|---|
| 83 | #-Q- ifort_CICLAD #PBS -m a |
|---|
| 84 | #-Q- ifort_CICLAD #PBS -j oe |
|---|
| 85 | #-Q- ifort_CICLAD ###PBS -q h12 # Queue for 12 hours at ciclad only |
|---|
| 86 | #-Q- ifort_CICLAD #PBS -o Script_Output_::Jobname::.000001 |
|---|
| 87 | #-Q- ifort_CICLAD #PBS -S /bin/ksh |
|---|
| 88 | #-Q- ifort_CICLAD #PBS -v BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
|---|
| 89 | #-Q- ifort_CICLAD #PBS -l nodes=1:ppn=::JobNumProcTot:: |
|---|
| 90 | #-Q- ifort_CICLAD #PBS -l mem=6gb |
|---|
| 91 | #-Q- ifort_CICLAD #PBS -l vmem=30gb |
|---|
| 92 | #-Q- default #!/bin/ksh |
|---|
| 93 | #-Q- default ################## |
|---|
| 94 | #-Q- default ## DEFAULT HOST ## |
|---|
| 95 | #-Q- default ################## |
|---|
| 96 | #-Q- default #For MPI use, uncomment next line : |
|---|
| 97 | #-Q- default #BATCH_NUM_PROC_TOT=::JobNumProcTot:: |
|---|
| 98 | |
|---|
| 99 | #************************************************************** |
|---|
| 100 | # Author: Sebastien Denvil |
|---|
| 101 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
|---|
| 102 | # $Revision:: $ Revision of last commit |
|---|
| 103 | # $Author:: $ Author of last commit |
|---|
| 104 | # $Date:: $ Date of last commit |
|---|
| 105 | # IPSL (2006) |
|---|
| 106 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
|---|
| 107 | # |
|---|
| 108 | #************************************************************** |
|---|
| 109 | |
|---|
| 110 | #set -eu |
|---|
| 111 | #set -vx |
|---|
| 112 | |
|---|
| 113 | date |
|---|
| 114 | echo |
|---|
| 115 | echo "#######################################" |
|---|
| 116 | echo "# ANOTHER GREAT SIMULATION #" |
|---|
| 117 | echo "#######################################" |
|---|
| 118 | echo |
|---|
| 119 | |
|---|
| 120 | #D--------------------------------------------------------------------== |
|---|
| 121 | #D- |
|---|
| 122 | #D- Job to launch IGCM models |
|---|
| 123 | #D- |
|---|
| 124 | #D--------------------------------------------------------------------== |
|---|
| 125 | #D- |
|---|
| 126 | |
|---|
| 127 | MODIPSL=::modipsl:: |
|---|
| 128 | libIGCM=${MODIPSL}/libIGCM |
|---|
| 129 | |
|---|
| 130 | #D--------------------------------------------------------------------== |
|---|
| 131 | #D- -1. PLACE FOR USER MODIFICATION |
|---|
| 132 | #D- - Job Verbosity |
|---|
| 133 | #D- - PeriodNb |
|---|
| 134 | #D- - Experience type : DEB(ug), DEV(elopment), RUN |
|---|
| 135 | #D--------------------------------------------------------------------== |
|---|
| 136 | |
|---|
| 137 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
|---|
| 138 | TaskType=computing |
|---|
| 139 | |
|---|
| 140 | #D- Increased verbosity (1, 2, 3) |
|---|
| 141 | Verbosity=3 |
|---|
| 142 | |
|---|
| 143 | #D- postProcessingStopLevel (0,1,2,3) |
|---|
| 144 | #D- 3 stop the main job if any post-processing went wrong (atlas, monitoring, metrics, create_ts, create_se, rebuild or pack_*) |
|---|
| 145 | #D- 2 stop only if create_ts, create_se or pack_* failed (dont stop if atlas, monitoring or metrics failed) |
|---|
| 146 | #D- 1 stop only if pack_* failed (dont stop if atlas, monitoring, metrics, create_ts or create_se failed) |
|---|
| 147 | #D- 0 never stop the main job for post-processing that went wrong |
|---|
| 148 | postProcessingStopLevel=1 |
|---|
| 149 | |
|---|
| 150 | #D- Experience type : DEB(ug), DEV(elopment), RUN (default) |
|---|
| 151 | #D- DEB : set -vx mode + output files are NOT read only |
|---|
| 152 | #D- DEV : output files are NOT read only |
|---|
| 153 | #D- RUN : output files ARE read only |
|---|
| 154 | JobType=RUN |
|---|
| 155 | |
|---|
| 156 | #D- Number of execution in one job |
|---|
| 157 | PeriodNb=1 |
|---|
| 158 | |
|---|
| 159 | #D- |
|---|
| 160 | #D- --------------------------------------------------------------------------------------------------# |
|---|
| 161 | #D- ! OPTIONNAL FEATURES /!\ USE WITH CARE ! # |
|---|
| 162 | #D- --------------------------------------------------------------------------------------------------# |
|---|
| 163 | |
|---|
| 164 | |
|---|
| 165 | #D- Low level debug : to perform lib test checks, stack construction and IO functions instrumentation |
|---|
| 166 | #D- Default=true |
|---|
| 167 | #D- |
|---|
| 168 | DEBUG_debug=true |
|---|
| 169 | |
|---|
| 170 | #D- Messaging : all activities and call stacks will be sent to ipsl servers |
|---|
| 171 | #D- If true will imply DEBUG_debug=true |
|---|
| 172 | #D- Default=false |
|---|
| 173 | #D- |
|---|
| 174 | BigBrother=true |
|---|
| 175 | |
|---|
| 176 | #D- Set DEBUG_sys to false to disable output calls of function |
|---|
| 177 | #D- true when JobType=DEB # means DEB(ug) |
|---|
| 178 | #D- |
|---|
| 179 | #DEBUG_sys=false |
|---|
| 180 | |
|---|
| 181 | #D- Define running directory |
|---|
| 182 | #D- Default=${TMPDIR} ie temporary batch directory |
|---|
| 183 | #D- |
|---|
| 184 | #RUN_DIR_PATH=/workdir/or/scratchdir/of/this/machine |
|---|
| 185 | |
|---|
| 186 | #D- Define submit directory |
|---|
| 187 | #D- Default= where you launch qsub (variable from scheduler) |
|---|
| 188 | #D- |
|---|
| 189 | #SUBMIT_DIR=$( pwd ) |
|---|
| 190 | |
|---|
| 191 | #D- Define input file root directory |
|---|
| 192 | #D- Default=/IGCMG/common/account/of/this/machine |
|---|
| 193 | #D- IPSL: /prodigfs/ipslfs/igcmg/IGCM |
|---|
| 194 | #D- TGCC: /ccc/work/cont003/igcmg/igcmg/IGCM |
|---|
| 195 | #D- IDRIS: /workgpfs/rech/psl/rpsl035/IGCM |
|---|
| 196 | #D- OBELIX: /home/orchideeshare/igcmg/IGCM |
|---|
| 197 | #D- OTHER: /home/${LOGIN}/IGCM |
|---|
| 198 | |
|---|
| 199 | #D- Change below to override the default |
|---|
| 200 | #R_IN=/u/rech/por/rpor111/DATA |
|---|
| 201 | |
|---|
| 202 | #D- Turn in dry run mode ? (0,1,2,3) |
|---|
| 203 | #D- Default=0 |
|---|
| 204 | #D- |
|---|
| 205 | #DRYRUN=3 |
|---|
| 206 | #D-# YOU HAVE TO COMPILE YOUR EXE FILES to USE DRYRUN MODE ! |
|---|
| 207 | #D-# ------------------------------------------------------------------------------------- |
|---|
| 208 | #D-# | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
|---|
| 209 | #D-# | | Cp/Exe/param/files | | | | |
|---|
| 210 | #D-# | | Chmod Qsub | | | | |
|---|
| 211 | #D-# ------------------------------------------------------------------------------------- |
|---|
| 212 | #D-# | 0 | yes | yes | yes | yes | |
|---|
| 213 | #D-# ------------------------------------------------------------------------------------- |
|---|
| 214 | #D-# | 1 | yes | yes | yes | no | |
|---|
| 215 | #D-# ------------------------------------------------------------------------------------- |
|---|
| 216 | #D-# | 2 | yes | yes | no | no | |
|---|
| 217 | #D-# ------------------------------------------------------------------------------------- |
|---|
| 218 | #D-# | 3 | yes | no | no | no | |
|---|
| 219 | #D-# ------------------------------------------------------------------------------------- |
|---|
| 220 | |
|---|
| 221 | #D- |
|---|
| 222 | # --------------------------------------------------------------------------------------------------# |
|---|
| 223 | #D- ! END OF OPTIONNAL FEATURES /!\ DO NOT MODIFY ANYTHING BELOW UNLESS YOU KNOW WHAT YOU ARE DOING # |
|---|
| 224 | # --------------------------------------------------------------------------------------------------# |
|---|
| 225 | |
|---|
| 226 | #D- |
|---|
| 227 | #D--------------------------------------------------------------------== |
|---|
| 228 | #D- 0.0 SYSTEM ENVIRONMENT |
|---|
| 229 | #D- - Define variables for Number of processors |
|---|
| 230 | #D- - Define MPI variables |
|---|
| 231 | #D- - Define batch scheduler variables |
|---|
| 232 | #D- - Source IGCM Library |
|---|
| 233 | #D- - Get RESOLution in .resol file (temporary) |
|---|
| 234 | #D--------------------------------------------------------------------== |
|---|
| 235 | |
|---|
| 236 | #---------------------------------------------------------------------== |
|---|
| 237 | |
|---|
| 238 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
|---|
| 239 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
|---|
| 240 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
|---|
| 241 | #------- |
|---|
| 242 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
|---|
| 243 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
|---|
| 244 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
|---|
| 245 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
|---|
| 246 | #------- |
|---|
| 247 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
|---|
| 248 | ( ${DEBUG_debug} ) && IGCM_card_Check |
|---|
| 249 | ( ${DEBUG_debug} ) && IGCM_date_Check |
|---|
| 250 | |
|---|
| 251 | #--------------------------------------------------------------------== |
|---|
| 252 | |
|---|
| 253 | #-- Resolution FLAG for oasis input |
|---|
| 254 | #RESOL="ORCA2xLMD9671" |
|---|
| 255 | [ -f ${SUBMIT_DIR}/../.resol ] && RESOL=$(head -1 ${SUBMIT_DIR}/../.resol) |
|---|
| 256 | #-- Chemistrie FLAG to ease chemistries configurations management |
|---|
| 257 | #CHEM="AER" |
|---|
| 258 | [ -f ${SUBMIT_DIR}/../.chimie ] && eval $(grep CHEM ${SUBMIT_DIR}/../.chimie) |
|---|
| 259 | |
|---|
| 260 | #D- |
|---|
| 261 | #D--------------------------------------------------------------------== |
|---|
| 262 | #D- 0.1 COMMON ENVIRONMENT |
|---|
| 263 | #D- - Read libIGCM compatibility version in config.card |
|---|
| 264 | #D- - Read UserChoices section |
|---|
| 265 | #D- - Read Ensemble section |
|---|
| 266 | #D- - Read Post section |
|---|
| 267 | #D- - Define all netcdf output directories |
|---|
| 268 | #D--------------------------------------------------------------------== |
|---|
| 269 | IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card |
|---|
| 270 | |
|---|
| 271 | if [ ! -r ${SUBMIT_DIR}/run.card ] ; then |
|---|
| 272 | #================================================# |
|---|
| 273 | # The file run.card doesn't exist # |
|---|
| 274 | #================================================# |
|---|
| 275 | FirstInitialize=true |
|---|
| 276 | #copy initial run.card |
|---|
| 277 | IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card |
|---|
| 278 | IGCM_debug_Print 2 "run.card copied from run.card.init" |
|---|
| 279 | else |
|---|
| 280 | FirstInitialize=false |
|---|
| 281 | IGCM_debug_Print 2 "run.card exists" |
|---|
| 282 | fi |
|---|
| 283 | |
|---|
| 284 | # ------------------------------------------------------------------ |
|---|
| 285 | # Activate BigBrother so as to supervise this simulation |
|---|
| 286 | # ------------------------------------------------------------------ |
|---|
| 287 | IGCM_debug_BigBro_Initialize |
|---|
| 288 | |
|---|
| 289 | #D- |
|---|
| 290 | #D--------------------------------------------------------------------== |
|---|
| 291 | #D- 1. INITIALIZE CONFIGURATION |
|---|
| 292 | #D- - Simulation configuration |
|---|
| 293 | #D- - Simulation parameters |
|---|
| 294 | #D- - Execution parameter |
|---|
| 295 | #D- - Define input files directory |
|---|
| 296 | #D- - Read or initialize CumulPeriod |
|---|
| 297 | #D- - run.card |
|---|
| 298 | #D--------------------------------------------------------------------== |
|---|
| 299 | IGCM_config_Initialize |
|---|
| 300 | |
|---|
| 301 | # --------------------------------------------------------------------== |
|---|
| 302 | # Define, create and cd RUN_DIR |
|---|
| 303 | # --------------------------------------------------------------------== |
|---|
| 304 | RUN_DIR=${RUN_DIR_PATH}/${config_UserChoices_JobName}.${$} |
|---|
| 305 | IGCM_sys_MkdirWork ${RUN_DIR} |
|---|
| 306 | IGCM_sys_Cd ${RUN_DIR} |
|---|
| 307 | |
|---|
| 308 | # ------------------------------------------------------------------ |
|---|
| 309 | # Test if all was right before proceeding further |
|---|
| 310 | # ------------------------------------------------------------------ |
|---|
| 311 | IGCM_debug_Verif_Exit |
|---|
| 312 | |
|---|
| 313 | #D- |
|---|
| 314 | #D---------------------------------------------------------------------== |
|---|
| 315 | #D- 2. INITIALIZE ALL COMPONENT OF THE CONFIGURATION |
|---|
| 316 | #D- - Define component executable |
|---|
| 317 | #D- - Define Write Frequency by component "1M" "1D" ... |
|---|
| 318 | #D- - Source ${comp}.driver |
|---|
| 319 | #D- - Define Storage Places by component |
|---|
| 320 | #D- - ${comp}_Initialize : |
|---|
| 321 | #D- - Patterns to sed |
|---|
| 322 | #D- - Variables from namelist |
|---|
| 323 | #D---------------------------------------------------------------------== |
|---|
| 324 | IGCM_comp_Initialize |
|---|
| 325 | |
|---|
| 326 | #D- |
|---|
| 327 | #D---------------------------------------------------------------------== |
|---|
| 328 | #D- 3. PERFORM GENERAL VERIFICATION |
|---|
| 329 | #D- - Verify compatibility of period length, write frequencies, ... |
|---|
| 330 | #D- - Verify compatibility of rebuild choices and post-process choices |
|---|
| 331 | #D- - Will stop here if something is wrong |
|---|
| 332 | #D---------------------------------------------------------------------== |
|---|
| 333 | IGCM_config_Check |
|---|
| 334 | |
|---|
| 335 | # ------------------------------------------------------------------ |
|---|
| 336 | # Test if all was right before entering the period loop |
|---|
| 337 | # ------------------------------------------------------------------ |
|---|
| 338 | IGCM_debug_Verif_Exit |
|---|
| 339 | |
|---|
| 340 | #D- |
|---|
| 341 | #D---------------------------------------------------------------------== |
|---|
| 342 | #D- 4. ENTER THE DEEP EXECUTION LOOP |
|---|
| 343 | #D- ! FASTEN YOUR SEAT BELTS PLEASE. ! |
|---|
| 344 | #D- ! WE WILL CROSS TURBULENCES. ! |
|---|
| 345 | #D---------------------------------------------------------------------== |
|---|
| 346 | |
|---|
| 347 | Period=1 |
|---|
| 348 | |
|---|
| 349 | PeriodContinue=false |
|---|
| 350 | if [ ${Period} -le ${PeriodNb} ]; then |
|---|
| 351 | PeriodContinue=true |
|---|
| 352 | fi |
|---|
| 353 | while ( ${PeriodContinue} ) ; do |
|---|
| 354 | |
|---|
| 355 | echo |
|---|
| 356 | echo "Starting iteration ${Period} / ${PeriodNb}" |
|---|
| 357 | |
|---|
| 358 | #D- |
|---|
| 359 | # ------------------------------------------------------------------ |
|---|
| 360 | #D- 4.1 COMPUTE AND DEFINE DATE INFORMATION. |
|---|
| 361 | #D- - ${PeriodDateBegin} |
|---|
| 362 | #D- - ${PeriodDateEnd} |
|---|
| 363 | #D- - ${CumulPeriod} |
|---|
| 364 | #D- - ${DatesPeriod}=${PeriodDateBegin}_${PeriodDateEnd} |
|---|
| 365 | #D- - ${PeriodLength} => JOURS=31 , 28, 29, 30 ; MOIS=0 ; ANS=0 |
|---|
| 366 | #D- - update run.card value |
|---|
| 367 | # ------------------------------------------------------------------ |
|---|
| 368 | IGCM_config_PeriodStart |
|---|
| 369 | |
|---|
| 370 | #D- |
|---|
| 371 | # ------------------------------------------------------------------ |
|---|
| 372 | #D- 4.2 BEGIN COMPUTATION ONLY IF NEEDED |
|---|
| 373 | # ------------------------------------------------------------------ |
|---|
| 374 | if [ ${SimulationLengthInDays} -gt ${ExperienceLengthInDays} ] ; then |
|---|
| 375 | IGCM_debug_Print 1 "break because '\${SimulationLengthInDays} -gt \${ExperienceLengthInDays}' : ${SimulationLengthInDays} -gt ${ExperienceLengthInDays}" |
|---|
| 376 | break ; |
|---|
| 377 | fi |
|---|
| 378 | |
|---|
| 379 | #D- |
|---|
| 380 | # ------------------------------------------------------------------ |
|---|
| 381 | #D- 4.3 CALL OPTIONNAL FUNCTION WITHIN DRIVER |
|---|
| 382 | #D- - to set special variables used in lists (Param, Init or Bc). |
|---|
| 383 | # ------------------------------------------------------------------ |
|---|
| 384 | IGCM_comp_PeriodStart |
|---|
| 385 | |
|---|
| 386 | #D- |
|---|
| 387 | # ------------------------------------------------------------------ |
|---|
| 388 | #D- 4.4 GET PARAMETERS TEXT FILES UPDATED BY JOB |
|---|
| 389 | #D- - (.def, namelist ...) |
|---|
| 390 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
|---|
| 391 | # ------------------------------------------------------------------ |
|---|
| 392 | IGCM_comp_GetInputParametersFiles |
|---|
| 393 | |
|---|
| 394 | #D- |
|---|
| 395 | # ------------------------------------------------------------------ |
|---|
| 396 | #D- 4.5 GET INITIAL STATE |
|---|
| 397 | #D- - (Etat0, carteveg,relief...) |
|---|
| 398 | #D- - NECESSARY ONLY IF CumulPeriod= (=> NUMERO) == 1 |
|---|
| 399 | #D- - AND ???_Restart=NO |
|---|
| 400 | #D- - READ AND USE BY GCM FOR ONLY ONE EXECUTION. |
|---|
| 401 | # ------------------------------------------------------------------ |
|---|
| 402 | IGCM_comp_GetInputInitialStateFiles |
|---|
| 403 | |
|---|
| 404 | #D- |
|---|
| 405 | # ------------------------------------------------------------------ |
|---|
| 406 | #D- 4.6 GET BOUNDARIES CONDITIONS |
|---|
| 407 | #D- - (SST, WIND[X,Y,Z], LAI ...) |
|---|
| 408 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
|---|
| 409 | # ------------------------------------------------------------------ |
|---|
| 410 | IGCM_comp_GetInputBoundaryFiles |
|---|
| 411 | |
|---|
| 412 | #D- |
|---|
| 413 | # ------------------------------------------------------------------ |
|---|
| 414 | #D- 4.7 GET SmoothFiles CONDITIONS |
|---|
| 415 | #D- - (SST, WIND[X,Y,Z], LAI ...) |
|---|
| 416 | #D- - READ AND USE BY GCM AT EACH EXECUTION |
|---|
| 417 | #D- - Do not change at each ${Period} |
|---|
| 418 | # ------------------------------------------------------------------ |
|---|
| 419 | IGCM_comp_GetInputSmoothFiles |
|---|
| 420 | |
|---|
| 421 | #D- |
|---|
| 422 | # ------------------------------------------------------------------ |
|---|
| 423 | #D- 4.8 GET RESTART FILES |
|---|
| 424 | #D- - (restartphy.nc, orca_restart.nc ...) |
|---|
| 425 | #D- - READ AND USE BY GCM AT EACH EXECUTION. |
|---|
| 426 | #D- |
|---|
| 427 | #D- - IF A COMPONENT DO NOT RESTART FROM PREVIOULSY COMPUTED RESTART |
|---|
| 428 | #D- - ONLY IF CumulPeriod= (=> NUMERO) == 1 |
|---|
| 429 | #D- - MUST EXECUTE CREATE ETAT0_LIMIT (TYPICALLY LMDZ AND ./create_etat0_limit.e) |
|---|
| 430 | #D- |
|---|
| 431 | #D- - IF CumulPeriod == 1 |
|---|
| 432 | #D- - AND A COMPONENT RESTART FROM PREVIOULSY COMPUTED RESTART |
|---|
| 433 | #D- - MUST BRING THIS RESTART IN ${RUN_DIR_PATH} |
|---|
| 434 | #D- |
|---|
| 435 | #D- - ELSE BRING RESTART FROM ${JobName} IN ${RUN_DIR_PATH} |
|---|
| 436 | # ------------------------------------------------------------------ |
|---|
| 437 | IGCM_comp_GetInputRestartFiles |
|---|
| 438 | |
|---|
| 439 | # ------------------------------------------------------------------ |
|---|
| 440 | #D- 4.9 GET BINARY FILES |
|---|
| 441 | #D- - USED BY AT EACH EXECUTION. |
|---|
| 442 | #D- - CHECK BINARIES HAS BEEN COMPILED WITH THE SAME COMPILER |
|---|
| 443 | #D- - RELOAD THE APPROPRIATE ENVIRONMENT THE FIRST TIME IF NEEDED |
|---|
| 444 | # ------------------------------------------------------------------ |
|---|
| 445 | IGCM_comp_GetInputBinaryFiles |
|---|
| 446 | |
|---|
| 447 | # ------------------------------------------------------------------ |
|---|
| 448 | # Test if all was right before Update |
|---|
| 449 | # ------------------------------------------------------------------ |
|---|
| 450 | IGCM_debug_Verif_Exit |
|---|
| 451 | |
|---|
| 452 | #D- |
|---|
| 453 | # ------------------------------------------------------------------ |
|---|
| 454 | #D- 4.10 ACTIVATE RUNNING ENVIRONNEMENT VARIABLES |
|---|
| 455 | #D- - including module load associated to compiler & tools |
|---|
| 456 | #D- - .env_intel17.0.2_curie |
|---|
| 457 | #D- - .env_netcdf4.3.3.1_curie |
|---|
| 458 | # ------------------------------------------------------------------ |
|---|
| 459 | IGCM_sys_activ_variables |
|---|
| 460 | |
|---|
| 461 | #D- |
|---|
| 462 | # ------------------------------------------------------------------ |
|---|
| 463 | #D- 4.11 UPDATE ParametersFiles |
|---|
| 464 | #D- - (.def, namelist ...) |
|---|
| 465 | #D- - with current value of (ORCA_NIT00, ORCA_LRSTAR, RAZ_DATE, ...) |
|---|
| 466 | # ------------------------------------------------------------------ |
|---|
| 467 | IGCM_comp_Update |
|---|
| 468 | |
|---|
| 469 | # ------------------------------------------------------------------ |
|---|
| 470 | # Test if all was right before execution |
|---|
| 471 | # ------------------------------------------------------------------ |
|---|
| 472 | IGCM_debug_Verif_Exit |
|---|
| 473 | |
|---|
| 474 | #D- |
|---|
| 475 | #D---------------------------------------------------------------------== |
|---|
| 476 | #D- 5. EXECUTION |
|---|
| 477 | #D---------------------------------------------------------------------== |
|---|
| 478 | |
|---|
| 479 | echo |
|---|
| 480 | echo "#######################################" |
|---|
| 481 | echo "# DIR BEFORE RUN EXECUTION #" |
|---|
| 482 | echo "#######################################" |
|---|
| 483 | echo |
|---|
| 484 | ls -lrt |
|---|
| 485 | |
|---|
| 486 | echo "========================================================================" |
|---|
| 487 | if [ ${DRYRUN} -le 1 ] ; then |
|---|
| 488 | REAL_DATE_INIT=$( date ) |
|---|
| 489 | echo > ${Exe_Output} |
|---|
| 490 | echo "#######################################" >> ${Exe_Output} |
|---|
| 491 | echo "EXECUTION of : ${EXECUTION}" |
|---|
| 492 | echo "EXECUTION of : ${EXECUTION}" >> ${Exe_Output} |
|---|
| 493 | echo >> ${Exe_Output} |
|---|
| 494 | typeset RET |
|---|
| 495 | RUN_DATE_BEGIN=$( date '+%Y-%m-%dT%H:%M:%S' ) |
|---|
| 496 | ${EXECUTION} >> ${Exe_Output} 2>&1 |
|---|
| 497 | RET=$? |
|---|
| 498 | RUN_DATE_END=$( date '+%Y-%m-%dT%H:%M:%S' ) |
|---|
| 499 | if [ ${RET} -gt 0 ] ; then |
|---|
| 500 | echo "Return code of executable :" ${RET} |
|---|
| 501 | IGCM_debug_Exit "EXECUTABLE" |
|---|
| 502 | IGCM_sys_Mkdir ${SUBMIT_DIR}/Debug |
|---|
| 503 | IGCM_sys_Cp ${Exe_Output} ${SUBMIT_DIR}/Debug/${PREFIX}_${Exe_Output}_error |
|---|
| 504 | ExecutionFail=true |
|---|
| 505 | fi |
|---|
| 506 | echo >> ${Exe_Output} |
|---|
| 507 | echo "#######################################" >> ${Exe_Output} |
|---|
| 508 | echo "libIGCM RunDateBegin=${RUN_DATE_BEGIN}" >> ${Exe_Output} |
|---|
| 509 | echo "libIGCM RunDateEnd=${RUN_DATE_END}" >> ${Exe_Output} |
|---|
| 510 | echo >> ${Exe_Output} |
|---|
| 511 | else |
|---|
| 512 | echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN |
|---|
| 513 | echo "EXECUTION of : ${EXECUTION} simulated for DRYRUN = " $DRYRUN > ${Exe_Output} |
|---|
| 514 | if ( $DEBUG_debug ) ; then |
|---|
| 515 | echo "FOR EXECUTION DRYRUN mode = " $DRYRUN >> stack |
|---|
| 516 | fi |
|---|
| 517 | fi |
|---|
| 518 | echo "========================================================================" |
|---|
| 519 | |
|---|
| 520 | echo |
|---|
| 521 | echo "#######################################" |
|---|
| 522 | echo "# DIR AFTER RUN EXECUTION #" |
|---|
| 523 | echo "#######################################" |
|---|
| 524 | echo |
|---|
| 525 | ls -lrt |
|---|
| 526 | |
|---|
| 527 | #D- |
|---|
| 528 | #D---------------------------------------------------------------------== |
|---|
| 529 | #D- 6. POST EXECUTION OPERATIONS |
|---|
| 530 | #D---------------------------------------------------------------------== |
|---|
| 531 | |
|---|
| 532 | #D- |
|---|
| 533 | # ------------------------------------------------------------------ |
|---|
| 534 | #D- 6.1. DESACTIVATE RUNNING ENVIRONNEMENT VARIABLES |
|---|
| 535 | # ------------------------------------------------------------------ |
|---|
| 536 | IGCM_sys_desactiv_variables |
|---|
| 537 | |
|---|
| 538 | #D- |
|---|
| 539 | # ------------------------------------------------------------------ |
|---|
| 540 | #D- 6.2. SAVE OUTPUTS |
|---|
| 541 | #D- - On archive/storage machine |
|---|
| 542 | #D- - netcdf outputs, restarts and text files of models |
|---|
| 543 | # ------------------------------------------------------------------ |
|---|
| 544 | IGCM_comp_Finalize |
|---|
| 545 | |
|---|
| 546 | # ------------------------------------------------------------------ |
|---|
| 547 | # Test if all was right after Finalize |
|---|
| 548 | # ------------------------------------------------------------------ |
|---|
| 549 | IGCM_debug_Verif_Exit |
|---|
| 550 | |
|---|
| 551 | #D- |
|---|
| 552 | # ------------------------------------------------------------------ |
|---|
| 553 | #D- 6.3. CONFIGURE POST-PROCESSING |
|---|
| 554 | #D- - asynchronous post-treatment (Level 0) when necessary (rebuild/pack) |
|---|
| 555 | #D- - classic post-treatment (Level 1) when necessary (TimeSeries/Seasonal) |
|---|
| 556 | # ------------------------------------------------------------------ |
|---|
| 557 | IGCM_post_Configure |
|---|
| 558 | |
|---|
| 559 | #D- |
|---|
| 560 | # ------------------------------------------------------------------ |
|---|
| 561 | #D- 6.4. SUBMIT POST-PROCESSING |
|---|
| 562 | #D- - remote rebuild or/and post-treatment process if necessary |
|---|
| 563 | # ------------------------------------------------------------------ |
|---|
| 564 | IGCM_post_Submit |
|---|
| 565 | |
|---|
| 566 | #D- |
|---|
| 567 | # ------------------------------------------------------------------ |
|---|
| 568 | #D- 6.5. FINALYZE CURRENT LOOP AND PREPARE NEXT ONE |
|---|
| 569 | #D- - Manage executable size to save only different binary |
|---|
| 570 | #D- - Write in run.card user, system and elapse time |
|---|
| 571 | #D- - Check that everything went well ! No ? then we stop. |
|---|
| 572 | #D- - Determine next computed period |
|---|
| 573 | # ------------------------------------------------------------------ |
|---|
| 574 | IGCM_config_PeriodEnd |
|---|
| 575 | |
|---|
| 576 | echo "Ending iteration ${Period}" |
|---|
| 577 | (( Period = Period + 1 )) |
|---|
| 578 | |
|---|
| 579 | # End loop if date end is reached |
|---|
| 580 | if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then |
|---|
| 581 | break ; |
|---|
| 582 | fi |
|---|
| 583 | |
|---|
| 584 | PeriodContinue=false |
|---|
| 585 | if [ ${Period} -le ${PeriodNb} ]; then |
|---|
| 586 | PeriodContinue=true |
|---|
| 587 | fi |
|---|
| 588 | done |
|---|
| 589 | |
|---|
| 590 | #D- |
|---|
| 591 | #D---------------------------------------------------------------------== |
|---|
| 592 | #D- 7. SUBMIT NEXT JOB OR SEND MAIL IF SIMULATION IS OVER. |
|---|
| 593 | #D---------------------------------------------------------------------== |
|---|
| 594 | IGCM_config_Finalize |
|---|
| 595 | |
|---|
| 596 | date |
|---|
